ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38c12 |
|---|---|
| Clone Library Name | barley_pub |
>TYDC2_PAPSO (P54769) Tyrosine/DOPA decarboxylase 2 [Includes: DOPA| decarboxylase (EC 4.1.1.28) (DDC); Tyrosine decarboxylase (EC 4.1.1.25)] Length = 531 Score = 62.0 bits (149), Expect = 7e-10 Identities = 27/48 (56%), Positives = 37/48 (77%) Frame = -2 Query: 450 TSGPYMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGK 307 T YM+ A VGG++M+R AVGSTLTE+ HV + WK++Q+ A +ILGK Sbjct: 476 TGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIYAWKILQEHADLILGK 523
>TYDC3_PAPSO (P54770) Tyrosine/DOPA decarboxylase 3 [Includes: DOPA| decarboxylase (EC 4.1.1.28) (DDC); Tyrosine decarboxylase (EC 4.1.1.25)] Length = 533 Score = 61.6 bits (148), Expect = 9e-10 Identities = 27/50 (54%), Positives = 37/50 (74%) Frame = -2 Query: 450 TSGPYMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGKME 301 T YM+ A VGG++M+R AVGSTLTE+ HV H W+V+Q+ A +IL K + Sbjct: 478 TGSVYMTHAVVGGVYMIRFAVGSTLTEERHVIHAWEVLQEHADLILSKFD 527
>TYDC5_PAPSO (P54771) Tyrosine/DOPA decarboxylase 5 [Includes: DOPA| decarboxylase (EC 4.1.1.28) (DDC); Tyrosine decarboxylase (EC 4.1.1.25)] Length = 523 Score = 57.0 bits (136), Expect = 2e-08 Identities = 24/46 (52%), Positives = 35/46 (76%) Frame = -2 Query: 438 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGKME 301 YM+ A VGG++M+R AVG+TLTE+ HV+ WKV+Q+ ILG ++ Sbjct: 473 YMTHAVVGGVYMIRFAVGATLTEERHVSMAWKVIQEHTDAILGTVD 518
>TYDC1_PAPSO (P54768) Tyrosine/DOPA decarboxylase 1 [Includes: DOPA| decarboxylase (EC 4.1.1.28) (DDC); Tyrosine decarboxylase (EC 4.1.1.25)] Length = 518 Score = 56.6 bits (135), Expect = 3e-08 Identities = 25/45 (55%), Positives = 33/45 (73%) Frame = -2 Query: 438 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGKM 304 YM+ A VGG++M+R AVG+TLTE+ HV WKVVQ+ ILG + Sbjct: 469 YMTHAVVGGVYMIRFAVGATLTEERHVTGAWKVVQEHTDAILGAL 513
>TYDC1_ARATH (Q8RY79) Tyrosine decarboxylase 1 (EC 4.1.1.25)| Length = 490 Score = 50.8 bits (120), Expect = 2e-06 Identities = 20/44 (45%), Positives = 31/44 (70%) Frame = -2 Query: 438 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVILGK 307 +MS + G +LRCA+G+ LTE+ HV WK++Q++AS +L K Sbjct: 447 FMSHTALSGKIVLRCAIGAPLTEEKHVKEAWKIIQEEASYLLHK 490
>DDC_CATRO (P17770) Aromatic-L-amino-acid decarboxylase (EC 4.1.1.28) (AADC)| (DOPA decarboxylase) (Tryptophan decarboxylase) Length = 500 Score = 48.1 bits (113), Expect = 1e-05 Identities = 21/39 (53%), Positives = 28/39 (71%) Frame = -2 Query: 450 TSGPYMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQ 334 T YM+ VGG++MLR AVGS+LTE+HHV W ++Q Sbjct: 452 TGRVYMTHTIVGGIYMLRLAVGSSLTEEHHVRRVWDLIQ 490
>TYDC3_PETCR (Q06087) Tyrosine decarboxylase 3 (EC 4.1.1.25)| Length = 516 Score = 47.4 bits (111), Expect = 2e-05 Identities = 19/42 (45%), Positives = 31/42 (73%) Frame = -2 Query: 438 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVIL 313 Y+S +GG++++R A+G TLT+ +HV+ WKV+QD A +L Sbjct: 461 YVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHADALL 502
>TYDC4_PETCR (Q06088) Tyrosine decarboxylase 4 (EC 4.1.1.25)| Length = 508 Score = 47.4 bits (111), Expect = 2e-05 Identities = 19/42 (45%), Positives = 31/42 (73%) Frame = -2 Query: 438 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVIL 313 Y+S +GG++++R A+G TLT+ +HV+ WKV+QD A +L Sbjct: 460 YVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHADALL 501
>TYDC2_PETCR (Q06086) Tyrosine decarboxylase 2 (EC 4.1.1.25)| Length = 514 Score = 47.4 bits (111), Expect = 2e-05 Identities = 19/42 (45%), Positives = 31/42 (73%) Frame = -2 Query: 438 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQASVIL 313 Y+S +GG++++R A+G TLT+ +HV+ WKV+QD A +L Sbjct: 459 YVSHTVLGGIYVIRFAIGGTLTDINHVSAAWKVLQDHAGALL 500
>TYDC2_ARATH (Q9M0G4) Probable tyrosine decarboxylase 2 (EC 4.1.1.25)| Length = 545 Score = 41.6 bits (96), Expect = 0.001 Identities = 17/39 (43%), Positives = 26/39 (66%) Frame = -2 Query: 438 YMSSANVGGMFMLRCAVGSTLTEQHHVAHGWKVVQDQAS 322 ++S + G F+LR AVG+ LTE+ HV W+++Q AS Sbjct: 499 FISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHAS 537
>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219| Length = 722 Score = 29.6 bits (65), Expect = 3.6 Identities = 14/26 (53%), Positives = 14/26 (53%) Frame = -1 Query: 379 PHGATPRCPWMEGRAGSGLRDPWEDG 302 P G TP P EG GSGL P E G Sbjct: 691 PSGETPPSPSQEGEEGSGLSRPGEAG 716
>DPAL_ECOLI (P66899) Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)| (Diaminopropionatase) (Alpha,beta-diaminopropionate ammonia-lyase) Length = 398 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -2 Query: 378 LTEQHHVAHGWKVVQDQA 325 LT QH HGW+VVQD A Sbjct: 174 LTMQHAQQHGWEVVQDTA 191
>DPAL_ECOL6 (P66900) Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)| (Diaminopropionatase) (Alpha,beta-diaminopropionate ammonia-lyase) Length = 398 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -2 Query: 378 LTEQHHVAHGWKVVQDQA 325 LT QH HGW+VVQD A Sbjct: 174 LTMQHAQQHGWEVVQDTA 191
>DPAL_ECO57 (P66901) Putative diaminopropionate ammonia-lyase (EC 4.3.1.15)| (Diaminopropionatase) (Alpha,beta-diaminopropionate ammonia-lyase) Length = 398 Score = 28.9 bits (63), Expect = 6.2 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -2 Query: 378 LTEQHHVAHGWKVVQDQA 325 LT QH HGW+VVQD A Sbjct: 174 LTMQHAQQHGWEVVQDTA 191
>FINC_RAT (P04937) Fibronectin precursor (FN)| Length = 2477 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 395 VRWGAPSRSNTTLPMDGRSCRIRPP*SLGRWRSSTPSALSNLYSI 261 ++W AP S+ T + R RP S GRW+ +T N Y+I Sbjct: 628 IQWNAPEPSHITKYI----LRWRPKTSTGRWKEATIPGHLNSYTI 668
>FINC_MOUSE (P11276) Fibronectin precursor (FN)| Length = 2477 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = -3 Query: 395 VRWGAPSRSNTTLPMDGRSCRIRPP*SLGRWRSSTPSALSNLYSI 261 ++W AP S+ T + R RP S GRW+ +T N Y+I Sbjct: 628 IQWNAPEPSHITKYI----LRWRPKTSTGRWKEATIPGHLNSYTI 668 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,015,742 Number of Sequences: 219361 Number of extensions: 1500077 Number of successful extensions: 3449 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3388 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3448 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
