ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMPA_MYCSA (P47707) Probable cytosol aminopeptidase (EC 3.4.11.1... 33 0.36
2SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100 30 3.0
3WIF1_DROME (Q9W3W5) Protein shifted precursor (WIF-1-like protein) 29 5.1
4YS56_CAEEL (Q09378) Hypothetical protein ZK673.6 29 6.7

>AMPA_MYCSA (P47707) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 520

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +2

Query: 56  HKEQSCSNLNQHTRTLKS-CTSAAIYTRQMT---PYIHMPVAGSWSK 184
           +KE   ++LN ++   KS C +AA++ ++ T   PYIH  VAG+  K
Sbjct: 393 NKESLVADLNNYSNNEKSDCNTAAMFLKEFTNNVPYIHCDVAGTADK 439



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>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
 Frame = +2

Query: 80  LNQHTRTLKSCTSAAIYTRQMTPYIHMPVAGSWSKIKWDKMNDAIP------NYIYKC-- 235
           +N H+R L+  TSA   ++ +    H+P+      +      + +P        I +C  
Sbjct: 314 MNCHSRYLRLTTSAIPNSQSLASRWHLPLGAVVCPLAETPEGEEVPLIDFGSTGIIRCRR 373

Query: 236 CRKLVNKNECVFYDAQRSWSCSALALL 316
           CR  VN     F D+ R W C+  ++L
Sbjct: 374 CRTYVNP-FVTFTDSGRKWRCNICSML 399



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>WIF1_DROME (Q9W3W5) Protein shifted precursor (WIF-1-like protein)|
          Length = 456

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 377 KQHRTWVCPSGGFKANFTHCKARPMLNKTSCAARRRRHIH 258
           KQ     C +G   ++  HCK  P      C  R+RRH+H
Sbjct: 411 KQRSICKCRNGTCVSH-KHCKCHPGFYGRHCNGRKRRHVH 449



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>YS56_CAEEL (Q09378) Hypothetical protein ZK673.6|
          Length = 284

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 182 KIKWDKMNDAIPNYIYKCCRKLVNKNECVFYD 277
           K+++ K N+A  N I + C K+ +K E  FYD
Sbjct: 104 KVEFIKKNEAEANMIAELCEKMGHKEEQHFYD 135


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,480,870
Number of Sequences: 219361
Number of extensions: 1136710
Number of successful extensions: 2525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2525
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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