ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38c08 |
|---|---|
| Clone Library Name | barley_pub |
>FLA7_ARATH (Q9SJ81) Fasciclin-like arabinogalactan protein 7 precursor| Length = 254 Score = 58.9 bits (141), Expect = 8e-09 Identities = 38/103 (36%), Positives = 55/103 (53%), Gaps = 6/103 (5%) Frame = -2 Query: 523 ASPVSMFA---YKVNVTYAAGTIGVVSGWATAKLASSVYSTSPVAVYALNRVLLPKEIFX 353 + PVS FA Y + T +GT+ + S W K++SSV+ST PVAVY +NRVLLP+ IF Sbjct: 134 SGPVSTFAGGQYSLKFTDVSGTVRIDSLWTRTKVSSSVFSTDPVAVYQVNRVLLPEAIFG 193 Query: 352 XXX--XXXXXXXXXXXPGRGGKAMADAPGASE-RAASDNAGAK 233 ++AD+ GAS +++ N+G K Sbjct: 194 TDVPPMPAPAPAPIVSAPSDSPSVADSEGASSPKSSHKNSGQK 236
>FLA1_ARATH (Q9FM65) Fasciclin-like arabinogalactan protein 1 precursor| Length = 424 Score = 34.3 bits (77), Expect = 0.22 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = -2 Query: 442 TAKLASSVYSTSPVAVYALNRVLLPKEIF 356 T K+ ++ P+A+YA ++VLLPKE+F Sbjct: 301 TVKIVDTLIDEQPLAIYATDKVLLPKELF 329
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 32.7 bits (73), Expect = 0.63 Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Frame = +2 Query: 152 HHQKPGDHQNHVAKHKAPCADDPARRTLGARIVTG--------STLAGARRVGHRLAPT 304 HH P H V + DPARR LG R G S A R + HRL PT Sbjct: 1393 HHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPT 1451
>FLA8_ARATH (O22126) Fasciclin-like arabinogalactan protein 8 precursor| (AtAGP8) Length = 420 Score = 32.7 bits (73), Expect = 0.63 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = -2 Query: 454 SGWATAKLASSVYSTSPVAVYALNRVLLPKEIF 356 +G A ++LA +V +PV ++ ++ VLLP E+F Sbjct: 300 TGVAPSRLADTVLDATPVVIFTVDNVLLPAELF 332
>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor| Length = 422 Score = 32.3 bits (72), Expect = 0.82 Identities = 22/92 (23%), Positives = 40/92 (43%) Frame = -2 Query: 499 YKVNVTYAAGTIGVVSGWATAKLASSVYSTSPVAVYALNRVLLPKEIFXXXXXXXXXXXX 320 Y + + + + + +G ++LA +V +PV ++ ++ VLLP E+F Sbjct: 286 YDLTTSTSGDEVILHTGVGPSRLADTVVDETPVVIFTVDNVLLPAELF------------ 333 Query: 319 XXXPGRGGKAMADAPGASERAASDNAGAKSSS 224 GK+ + AP +A AKS S Sbjct: 334 -------GKSSSPAPAPEPVSAPTPTPAKSPS 358
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 32.3 bits (72), Expect = 0.82 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 10/62 (16%) Frame = +2 Query: 149 LHHQKPGDHQNHVAKHKAPCA--DDPARRTLGAR--------IVTGSTLAGARRVGHRLA 298 LHH P + A+H+ DPARR LG R +T S A R + HRL Sbjct: 1396 LHHHSPHSPHSPHARHEPVLRLWGDPARRELGYRAGLGSQEKALTASPPAARRSLLHRLP 1455 Query: 299 PT 304 PT Sbjct: 1456 PT 1457
>ODPB_RAT (P49432) Pyruvate dehydrogenase E1 component subunit beta,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) Length = 359 Score = 30.8 bits (68), Expect = 2.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 258 LPVTMRAPRVRRAGSSAQGALCLATWFWWSPG 163 +P+ R P AG +AQ + C A W+ PG Sbjct: 140 VPIVFRGPNGASAGVAAQHSQCFAAWYGHCPG 171
>ODPB_MOUSE (Q9D051) Pyruvate dehydrogenase E1 component subunit beta,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) Length = 359 Score = 30.8 bits (68), Expect = 2.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 258 LPVTMRAPRVRRAGSSAQGALCLATWFWWSPG 163 +P+ R P AG +AQ + C A W+ PG Sbjct: 140 VPIVFRGPNGASAGVAAQHSQCFAAWYGHCPG 171
>ODPB_HUMAN (P11177) Pyruvate dehydrogenase E1 component subunit beta,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) Length = 359 Score = 30.8 bits (68), Expect = 2.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 258 LPVTMRAPRVRRAGSSAQGALCLATWFWWSPG 163 +P+ R P AG +AQ + C A W+ PG Sbjct: 140 VPIVFRGPNGASAGVAAQHSQCFAAWYGHCPG 171
>S6A19_HUMAN (Q695T7) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 30.4 bits (67), Expect = 3.1 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +2 Query: 131 MYRIIRLHHQKPGDHQNHVA 190 +Y++IR H QKPGDHQ V+ Sbjct: 602 IYKLIRNHCQKPGDHQGLVS 621
>IL2RG_BOVIN (Q95118) Cytokine receptor common gamma chain precursor (Gamma-C)| (Interleukin-2 receptor gamma chain) (IL-2R gamma chain) (p64) (CD132 antigen) Length = 379 Score = 30.0 bits (66), Expect = 4.1 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +1 Query: 37 LHYVVHHFGG---INEFGN-TFRKGIKKKSWFVPMHVQNYQTTPSKTRRPPEPRSQAQGS 204 LHY +F G + E G+ F +GI WF ++ Y+T + + P E R Q + Sbjct: 93 LHYGYRNFNGDDKLQECGHYLFSEGITSGCWFGKKEIRLYETFVVQLQDPREHRKQPKQM 152 Query: 205 LR 210 L+ Sbjct: 153 LK 154
>LRC17_HUMAN (Q8N6Y2) Leucine-rich repeat-containing protein 17 precursor| (p37NB) Length = 441 Score = 29.6 bits (65), Expect = 5.3 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = +1 Query: 22 YDVHRLHYVVHHFGGINEFGNTFRKGIKKKSWFVPMHVQNYQTTPSKTRRPPEPRS 189 Y++H L+Y + H ++ G + + K W V ++++Y K + P P S Sbjct: 356 YNIHYLYYWLKHHYNVHFNGLECKTPEEYKGWSVGKYIRSYYEECPKDKLPAYPES 411
>LOZEN_DROME (Q9W349) Protein lozenge| Length = 826 Score = 29.6 bits (65), Expect = 5.3 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +2 Query: 371 QQHPVERVHRDGRRRVHAAGELGG-GPARHDADRAGGVGDVNLV 499 QQ ++VH +++V +AGE+GG G ++ R VGD++ V Sbjct: 779 QQQQQQQVHHPQQQQVESAGEVGGSGAGGVESAREEDVGDLSQV 822
>SYST_LYCES (P27058) Systemin precursor| Length = 200 Score = 28.9 bits (63), Expect = 9.1 Identities = 13/52 (25%), Positives = 25/52 (48%) Frame = +2 Query: 107 KNHGSCQCMYRIIRLHHQKPGDHQNHVAKHKAPCADDPARRTLGARIVTGST 262 KN G ++LHH+K GD + + + + P D + T+ + ++ T Sbjct: 9 KNKGDDMQEEPKVKLHHEKGGDEKEKIIEKETPSQDINNKDTISSYVLRDDT 60
>ODPB_ARATH (Q38799) Pyruvate dehydrogenase E1 component subunit beta,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) Length = 363 Score = 28.9 bits (63), Expect = 9.1 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 258 LPVTMRAPRVRRAGSSAQGALCLATWFWWSPG 163 +P+ R P AG AQ + C A W+ PG Sbjct: 143 VPIVFRGPNGAAAGVGAQHSQCYAAWYASVPG 174
>LRC17_MOUSE (Q9CXD9) Leucine-rich repeat-containing protein 17 precursor| Length = 443 Score = 28.9 bits (63), Expect = 9.1 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = +1 Query: 22 YDVHRLHYVVHHFGGINEFGNTFRKGIKKKSWFVPMHVQNYQTTPSKTRRPPEPRS 189 Y +H L+Y + H ++ G + + K W V +V++Y K + P P + Sbjct: 358 YSIHYLYYWLKHHYNVHYNGLECKTPEEYKGWSVGKYVRSYYEECPKDKLPAYPET 413
>PPCK_LEPIN (Q8F9E4) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 530 Score = 28.9 bits (63), Expect = 9.1 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +1 Query: 4 YKQCIHYDVHRLHYVVHHFGGINEFGNTFRKGIKKKSW 117 YK+C++Y H+ YV + G N + + +K+W Sbjct: 92 YKKCVNYLSHKKLYVFDGYAGANPETRVSLRVVSEKAW 129
>PPCK_LEPIC (Q72VT0) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 530 Score = 28.9 bits (63), Expect = 9.1 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +1 Query: 4 YKQCIHYDVHRLHYVVHHFGGINEFGNTFRKGIKKKSW 117 YK+C++Y H+ YV + G N + + +K+W Sbjct: 92 YKKCVNYLSHKKLYVFDGYAGANPETRVSLRVVSEKAW 129 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,087,764 Number of Sequences: 219361 Number of extensions: 1143044 Number of successful extensions: 4055 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3920 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4054 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
