ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450330.1| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
3dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
4gb|BT009507.1| Triticum aestivum clone wr1.pk0089.e5:fis, full i... 60 8e-06
5emb|CR726233.2|CNS0GNB3 Tetraodon nigroviridis full-length cDNA 50 0.007
6gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 46 0.12
7ref|XM_757470.1| Ustilago maydis 521 hypothetical protein (UM064... 44 0.46
8gb|AC061709.25| Homo sapiens 12 BAC RP11-417O18 (Roswell Park Ca... 44 0.46
9gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.8
10emb|CR642078.2|CNS0EUEC Tetraodon nigroviridis full-length cDNA 42 1.8
11emb|CR638556.2|CNS0EROI Tetraodon nigroviridis full-length cDNA 42 1.8
12emb|AL606837.1|BMMIF1 Brugia malayi genomic DNA MIF-1 locus 42 1.8
13emb|AL596181.10| Mouse DNA sequence from clone RP23-234K24 on ch... 42 1.8
14gb|AC153317.3| Colobus guereza clone CH272-362P12, complete sequ... 40 7.1
15gb|BC049903.1| Mus musculus VPR domain containing 9, mRNA (cDNA ... 40 7.1
16gb|BC023014.1| Mus musculus VPR domain containing 9, mRNA (cDNA ... 40 7.1
17ref|XM_655960.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 7.1
18ref|XM_977404.1| PREDICTED: Mus musculus VPR domain containing 9... 40 7.1
19ref|XM_977446.1| PREDICTED: Mus musculus VPR domain containing 9... 40 7.1
20ref|XM_911812.2| PREDICTED: Mus musculus VPR domain containing 9... 40 7.1
21ref|XM_899365.2| PREDICTED: Mus musculus VPR domain containing 9... 40 7.1
22ref|XM_619431.3| PREDICTED: Mus musculus VPR domain containing 9... 40 7.1
23emb|CR732898.2|CNS0GSFG Tetraodon nigroviridis full-length cDNA 40 7.1
24emb|CR732586.2|CNS0GS7J Tetraodon nigroviridis full-length cDNA 40 7.1
25emb|CR732119.2|CNS0GRUK Tetraodon nigroviridis full-length cDNA 40 7.1
26emb|CR729003.2|CNS0GPG1 Tetraodon nigroviridis full-length cDNA 40 7.1
27emb|CR725993.2|CNS0GN4F Tetraodon nigroviridis full-length cDNA 40 7.1
28emb|CR724978.2|CNS0GMC8 Tetraodon nigroviridis full-length cDNA 40 7.1
29emb|CR702462.2|CNS0G4YY Tetraodon nigroviridis full-length cDNA 40 7.1
30emb|CR696460.2|CNS0G0C8 Tetraodon nigroviridis full-length cDNA 40 7.1
31emb|CR694433.2|CNS0FYRX Tetraodon nigroviridis full-length cDNA 40 7.1
32emb|CR691585.2|CNS0FWKT Tetraodon nigroviridis full-length cDNA 40 7.1
33gb|AC011287.4| Homo sapiens BAC clone RP11-22K15 from 7, complet... 40 7.1
34gb|AC004942.1| Homo sapiens PAC clone RP5-981B16 from 7, complet... 40 7.1
35gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, comp... 40 7.1
36gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosom... 40 7.1
37gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete seq... 40 7.1
38gb|AC061997.12| Homo sapiens chromosome 11, clone RP11-324K6, co... 40 7.1
39ref|XM_628640.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 7.1
40gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 1... 40 7.1
41dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
42dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
43dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.1
44emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr... 40 7.1
45dbj|AP000684.4| Homo sapiens genomic DNA, chromosome 11q clone:C... 40 7.1
46gb|BC012016.1| Mus musculus VPR domain containing 9, mRNA (cDNA ... 40 7.1 
>ref|XM_450330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 843

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 181 agaccagatcctttgaacttttcctccacgaggcgatccattttctctcccatttctttg 240
           ||||| |||||||||||||| |||||||| ||  |||||| ||| |||||||| ||||||
Sbjct: 833 agacctgatcctttgaacttgtcctccacaagttgatccagtttttctcccatgtctttg 774

                                             
Query: 241 gtcatgtggttcacccagtccccaaccttccctt 274
            |||| ||||| ||||| ||||||  ||||||||
Sbjct: 773 ctcatatggttaacccaatccccagtcttccctt 740
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                           
Query: 181     agaccagatcctttgaacttttcctccacgaggcgatccattttctctcccatttctttg 240
               ||||| |||||||||||||| |||||||| ||  |||||| ||| |||||||| ||||||
Sbjct: 4197561 agacctgatcctttgaacttgtcctccacaagttgatccagtttttctcccatgtctttg 4197502

                                                 
Query: 241     gtcatgtggttcacccagtccccaaccttccctt 274
                |||| ||||| ||||| ||||||  ||||||||
Sbjct: 4197501 ctcatatggttaacccaatccccagtcttccctt 4197468
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>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0523B07
          Length = 170510

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                         
Query: 181   agaccagatcctttgaacttttcctccacgaggcgatccattttctctcccatttctttg 240
             ||||| |||||||||||||| |||||||| ||  |||||| ||| |||||||| ||||||
Sbjct: 21320 agacctgatcctttgaacttgtcctccacaagttgatccagtttttctcccatgtctttg 21261

                                               
Query: 241   gtcatgtggttcacccagtccccaaccttccctt 274
              |||| ||||| ||||| ||||||  ||||||||
Sbjct: 21260 ctcatatggttaacccaatccccagtcttccctt 21227
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>gb|BT009507.1| Triticum aestivum clone wr1.pk0089.e5:fis, full insert mRNA
           sequence
          Length = 634

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 242 tcatgtggttcacccagtccccaaccttccctttcctgaacagcga 287
           |||||||||||||||| || ||||||| ||||||||| ||||||||
Sbjct: 448 tcatgtggttcacccaatctccaacctcccctttcctaaacagcga 403



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                       
Query: 434 cgaggaagctcgcgagcttcctagcaaccttgagtggatccgacacaatctcttcgtacc 493
           |||||||||| || |||||||||  ||||||| |||  || |||| |||||| || ||||
Sbjct: 250 cgaggaagcttgctagcttcctaataaccttgggtgtgtctgacataatctcctcatacc 191

                            
Query: 494 tgagaaacatcacctct 510
           | |||||||||||||||
Sbjct: 190 tcagaaacatcacctct 174
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>emb|CR726233.2|CNS0GNB3 Tetraodon nigroviridis full-length cDNA
          Length = 1335

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 247  tggttcacccagtccccaaccttcccttt 275
            |||||| ||||||||||||||||||||||
Sbjct: 1097 tggttctcccagtccccaaccttcccttt 1069
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 420     ggtgaagggcgcgtcgaggaagctcgcgagc 450
               |||||||||| |||||||||||| |||||||
Sbjct: 2891778 ggtgaagggcacgtcgaggaagcgcgcgagc 2891748
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>ref|XM_757470.1| Ustilago maydis 521 hypothetical protein (UM06416.1) partial mRNA
          Length = 1938

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 360  tgattcgaagctgcagaagctc 381
            ||||||||||||||||||||||
Sbjct: 1695 tgattcgaagctgcagaagctc 1716
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>gb|AC061709.25| Homo sapiens 12 BAC RP11-417O18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 208524

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 221   ttttctctcccatttctttggt 242
             ||||||||||||||||||||||
Sbjct: 68124 ttttctctcccatttctttggt 68103
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 413     tgtcttcggtgaagggcgcgt 433
               |||||||||||||||||||||
Sbjct: 3078580 tgtcttcggtgaagggcgcgt 3078560
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>emb|CR642078.2|CNS0EUEC Tetraodon nigroviridis full-length cDNA
          Length = 914

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 255 ccagtccccaaccttcccttt 275
           |||||||||||||||||||||
Sbjct: 729 ccagtccccaaccttcccttt 709
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>emb|CR638556.2|CNS0EROI Tetraodon nigroviridis full-length cDNA
          Length = 1001

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 255 ccagtccccaaccttcccttt 275
           |||||||||||||||||||||
Sbjct: 794 ccagtccccaaccttcccttt 774
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>emb|AL606837.1|BMMIF1 Brugia malayi  genomic DNA MIF-1 locus
          Length = 82804

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 23    tatattgctctttataaagtt 43
             |||||||||||||||||||||
Sbjct: 56685 tatattgctctttataaagtt 56665
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>emb|AL596181.10| Mouse DNA sequence from clone RP23-234K24 on chromosome 11 Contains
             nine novel genes, the Trpv2 for member 2 transient
             receptor potential cation channel subfamily V, the Ubb
             gene for ubiquitin B, the 3' end of the gene for the
             ortholog of human and rat phosphatidylinositol glycan
             class L PIGL and five CpG islands, complete sequence
          Length = 195339

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 503   tcacctcttgcggcctcgcccagct 527
             |||||||||| ||||||||||||||
Sbjct: 99901 tcacctcttggggcctcgcccagct 99877
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>gb|AC153317.3| Colobus guereza clone CH272-362P12, complete sequence
          Length = 202271

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     tagtatatattgctctttat 37
              ||||||||||||||||||||
Sbjct: 186328 tagtatatattgctctttat 186347
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>gb|BC049903.1| Mus musculus VPR domain containing 9, mRNA (cDNA clone IMAGE:4501059)
          Length = 1450

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  cagaagctcacaacctggtc 392
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>gb|BC023014.1| Mus musculus VPR domain containing 9, mRNA (cDNA clone
           IMAGE:5365459), containing frame-shift errors
          Length = 1215

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 cagaagctcacaacctggtc 392
           ||||||||||||||||||||
Sbjct: 758 cagaagctcacaacctggtc 739
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>ref|XM_655960.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3448.2), mRNA
          Length = 2655

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 252  cacccagtccccaaccttcc 271
            ||||||||||||||||||||
Sbjct: 1122 cacccagtccccaaccttcc 1103
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>ref|XM_977404.1| PREDICTED: Mus musculus VPR domain containing 9, transcript variant
           1 (Prdm9), mRNA
          Length = 963

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 cagaagctcacaacctggtc 392
           ||||||||||||||||||||
Sbjct: 758 cagaagctcacaacctggtc 739
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>ref|XM_977446.1| PREDICTED: Mus musculus VPR domain containing 9, transcript variant 2
            (Prdm9), mRNA
          Length = 1442

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  cagaagctcacaacctggtc 392
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>ref|XM_911812.2| PREDICTED: Mus musculus VPR domain containing 9, transcript variant 3
            (Prdm9), mRNA
          Length = 1442

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  cagaagctcacaacctggtc 392
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>ref|XM_899365.2| PREDICTED: Mus musculus VPR domain containing 9, transcript variant
           2 (Prdm9), mRNA
          Length = 963

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 cagaagctcacaacctggtc 392
           ||||||||||||||||||||
Sbjct: 758 cagaagctcacaacctggtc 739
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>ref|XM_619431.3| PREDICTED: Mus musculus VPR domain containing 9, transcript variant 1
            (Prdm9), mRNA
          Length = 1442

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  cagaagctcacaacctggtc 392
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218
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>emb|CR732898.2|CNS0GSFG Tetraodon nigroviridis full-length cDNA
          Length = 1026

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 656 gtggttcttccagtcgccaaccttccctttcc 625
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>emb|CR732586.2|CNS0GS7J Tetraodon nigroviridis full-length cDNA
          Length = 1142

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 782 gtggttcttccagtcgccaaccttccctttcc 751
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>emb|CR732119.2|CNS0GRUK Tetraodon nigroviridis full-length cDNA
          Length = 1013

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 655 gtggttcttccagtcgccaaccttccctttcc 624
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>emb|CR729003.2|CNS0GPG1 Tetraodon nigroviridis full-length cDNA
          Length = 1123

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 782 gtggttcttccagtcgccaaccttccctttcc 751
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>emb|CR725993.2|CNS0GN4F Tetraodon nigroviridis full-length cDNA
          Length = 1028

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 655 gtggttcttccagtcgccaaccttccctttcc 624
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>emb|CR724978.2|CNS0GMC8 Tetraodon nigroviridis full-length cDNA
          Length = 977

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 656 gtggttcttccagtcgccaaccttccctttcc 625
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>emb|CR702462.2|CNS0G4YY Tetraodon nigroviridis full-length cDNA
          Length = 949

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 782 gtggttcttccagtcgccaaccttccctttcc 751
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>emb|CR696460.2|CNS0G0C8 Tetraodon nigroviridis full-length cDNA
          Length = 782

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 656 gtggttcttccagtcgccaaccttccctttcc 625
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>emb|CR694433.2|CNS0FYRX Tetraodon nigroviridis full-length cDNA
          Length = 923

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 82  gtggttcttccagtcaccaaccttccctttcc 51
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>emb|CR691585.2|CNS0FWKT Tetraodon nigroviridis full-length cDNA
          Length = 921

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 246 gtggttcacccagtccccaaccttccctttcc 277
           |||||||  |||||| ||||||||||||||||
Sbjct: 656 gtggttcttccagtcgccaaccttccctttcc 625
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>gb|AC011287.4| Homo sapiens BAC clone RP11-22K15 from 7, complete sequence
          Length = 132943

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cattttctctcccatttctt 238
             ||||||||||||||||||||
Sbjct: 71271 cattttctctcccatttctt 71290
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>gb|AC004942.1| Homo sapiens PAC clone RP5-981B16 from 7, complete sequence
          Length = 76079

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 23   tatattgctctttataaagt 42
            ||||||||||||||||||||
Sbjct: 9175 tatattgctctttataaagt 9194
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>gb|AC142355.1| Pan troglodytes BAC clone RP43-22I16 from 7, complete sequence
          Length = 192927

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   cattttctctcccatttctt 238
             ||||||||||||||||||||
Sbjct: 22123 cattttctctcccatttctt 22142
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>gb|AC156023.2| Mus musculus BAC clone RP23-210I15 from chromosome 16, complete
             sequence
          Length = 196765

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cctttgaacttttcctccac 209
             ||||||||||||||||||||
Sbjct: 79269 cctttgaacttttcctccac 79288
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>gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete sequence
          Length = 106058

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 217   tccattttctctcccatttc 236
             ||||||||||||||||||||
Sbjct: 52135 tccattttctctcccatttc 52154
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>gb|AC061997.12| Homo sapiens chromosome 11, clone RP11-324K6, complete sequence
          Length = 106216

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   tcctttgaacttttcctcca 208
             ||||||||||||||||||||
Sbjct: 24324 tcctttgaacttttcctcca 24343
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>ref|XM_628640.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_4980),
           partial mRNA
          Length = 6456

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 atccattttctctcccattt 235
           ||||||||||||||||||||
Sbjct: 281 atccattttctctcccattt 300
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>gb|AC022209.4|AC022209 Homo sapiens BAC clone RP11-588M21 from 11, complete sequence
          Length = 177314

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  tcctttgaacttttcctcca 208
            ||||||||||||||||||||
Sbjct: 8581 tcctttgaacttttcctcca 8562
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     gtcatgtggttcacccagtc 260
               ||||||||||||||||||||
Sbjct: 7945849 gtcatgtggttcacccagtc 7945830
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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   gtcatgtggttcacccagtc 260
             ||||||||||||||||||||
Sbjct: 53367 gtcatgtggttcacccagtc 53348
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>dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full
            insert sequence
          Length = 1260

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  gtcatgtggttcacccagtc 260
            ||||||||||||||||||||
Sbjct: 1050 gtcatgtggttcacccagtc 1031
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>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
             sequence
          Length = 268616

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   cagaagctcacaacctggtc 392
             ||||||||||||||||||||
Sbjct: 79366 cagaagctcacaacctggtc 79385
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>dbj|AP000684.4| Homo sapiens genomic DNA, chromosome 11q clone:CMB9-57N12, complete
             sequences
          Length = 141977

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 112   tgcagatagattccataatacatcaaca 139
             ||||||||||||| |||||||| |||||
Sbjct: 82436 tgcagatagattcaataatacaacaaca 82463
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>gb|BC012016.1| Mus musculus VPR domain containing 9, mRNA (cDNA clone
            IMAGE:4501059), complete cds
          Length = 1450

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  cagaagctcacaacctggtc 392
            ||||||||||||||||||||
Sbjct: 1237 cagaagctcacaacctggtc 1218


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,280,405
Number of Sequences: 3902068
Number of extensions: 4280405
Number of successful extensions: 82918
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82747
Number of HSP's gapped (non-prelim): 171
length of query: 528
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 505
effective length of database: 17,143,297,704
effective search space: 8657365340520
effective search space used: 8657365340520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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