ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart38b12 |
|---|---|
| Clone Library Name | barley_pub |
>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC13III) Length = 320 Score = 139 bits (349), Expect = 5e-33 Identities = 68/82 (82%), Positives = 70/82 (85%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 MPKML DGA+EYEDG PATEAQMGKDVVSFLSWAAEPEMEERKLMG KWIF Sbjct: 239 MPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQA 298 Query: 310 AYYRRMRWSVLKSRKLVLDVVN 245 AYYRR+RWSVLKSRKLVLDVVN Sbjct: 299 AYYRRLRWSVLKSRKLVLDVVN 320
>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC18I) (Fragment) Length = 260 Score = 138 bits (347), Expect = 9e-33 Identities = 67/82 (81%), Positives = 70/82 (85%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 MPKML DGA+EYEDG PATEAQMGKDVVSFL+WAAEPEMEERKLMG KWIF Sbjct: 179 MPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQA 238 Query: 310 AYYRRMRWSVLKSRKLVLDVVN 245 AYYRR+RWSVLKSRKLVLDVVN Sbjct: 239 AYYRRLRWSVLKSRKLVLDVVN 260
>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor| Length = 332 Score = 91.7 bits (226), Expect = 1e-18 Identities = 41/79 (51%), Positives = 56/79 (70%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 M ++L DG ++YEDGTPA+ +QM KDVV FL+WAAEPEM++RK MG+K + Sbjct: 234 MARVLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALS 293 Query: 310 AYYRRMRWSVLKSRKLVLD 254 Y +R +W+ LKSRK+V D Sbjct: 294 VYVKRYKWAWLKSRKIVYD 312
>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor| Length = 309 Score = 80.5 bits (197), Expect = 2e-15 Identities = 34/79 (43%), Positives = 52/79 (65%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 M ++L D +EYEDGTPAT +QM KDV +FL+W AEPE +ERK +G+K + Sbjct: 225 MARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLS 284 Query: 310 AYYRRMRWSVLKSRKLVLD 254 + ++ +W+ +K+RK V + Sbjct: 285 IWVKKFKWAGIKTRKFVFN 303
>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor| Length = 292 Score = 79.3 bits (194), Expect = 5e-15 Identities = 34/79 (43%), Positives = 52/79 (65%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 M ++L D +EYEDGTPAT +QM KDV +FL W +EPE +ERK +G+K + Sbjct: 210 MGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERKRLGLKAMIVLSSLYLLS 269 Query: 310 AYYRRMRWSVLKSRKLVLD 254 + ++ +W+ +KSRK+V + Sbjct: 270 VWVKKFKWASIKSRKIVFN 288
>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 73.2 bits (178), Expect = 4e-13 Identities = 34/67 (50%), Positives = 45/67 (67%) Frame = -3 Query: 463 IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWS 284 +EY+DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K + +R +WS Sbjct: 253 LEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWS 312 Query: 283 VLKSRKL 263 VLKSRKL Sbjct: 313 VLKSRKL 319
>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome| c-1) Length = 241 Score = 72.4 bits (176), Expect = 6e-13 Identities = 35/76 (46%), Positives = 48/76 (63%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 M + + +E++DGTPAT +Q+ KDV +FL WAAEPE + RK MG+K + Sbjct: 160 MAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLV 219 Query: 310 AYYRRMRWSVLKSRKL 263 +R +WSVLKSRKL Sbjct: 220 YAMKRHKWSVLKSRKL 235
>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 71.2 bits (173), Expect = 1e-12 Identities = 33/67 (49%), Positives = 45/67 (67%) Frame = -3 Query: 463 IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWS 284 +E++DGTPAT +Q+ KDV +FL WA+EPE + RK MG+K + +R +WS Sbjct: 253 LEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWS 312 Query: 283 VLKSRKL 263 VLKSRKL Sbjct: 313 VLKSRKL 319
>CY1_EUGGR (P20114) Cytochrome c1, heme protein| Length = 243 Score = 70.5 bits (171), Expect = 2e-12 Identities = 36/82 (43%), Positives = 43/82 (52%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 MP L D IEYEDGTPA+ QM KDV FL W + P +ERKL+G K I Sbjct: 159 MPPPLTDDMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSS 218 Query: 310 AYYRRMRWSVLKSRKLVLDVVN 245 YY R + +SR+L N Sbjct: 219 GYYNRFLSGLWRSRRLAFRPFN 240
>CY1_RHORU (P23135) Cytochrome c1 precursor| Length = 272 Score = 64.7 bits (156), Expect = 1e-10 Identities = 29/48 (60%), Positives = 38/48 (79%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVK 347 MP LMD I YEDGT AT+ QM +DVV++L+WAAEPE++ RK +G+K Sbjct: 200 MPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDARKSLGLK 247
>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]| Length = 687 Score = 63.2 bits (152), Expect = 4e-10 Identities = 28/46 (60%), Positives = 33/46 (71%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 353 MPK L DG + Y+DG+PAT AQ KDV +FL W AEP ME RK +G Sbjct: 616 MPKPLSDGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEARKRLG 661
>CY1_RHOCA (P08501) Cytochrome c1 precursor| Length = 279 Score = 59.3 bits (142), Expect = 5e-09 Identities = 30/75 (40%), Positives = 40/75 (53%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 MP L+D + YEDGTPAT QM +DV +FL WAAEP++ RK MG+ + Sbjct: 204 MPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGLLSVML 263 Query: 310 AYYRRMRWSVLKSRK 266 + W+ K K Sbjct: 264 YLTNKRLWAPYKGHK 278
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 54.3 bits (129), Expect = 2e-07 Identities = 27/72 (37%), Positives = 35/72 (48%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 M L D + YEDGTPAT QM DV +FL W AEP+M +RK +G + Sbjct: 373 MAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALL 432 Query: 310 AYYRRMRWSVLK 275 + W +K Sbjct: 433 YLTNKKLWQPIK 444
>CY1_RHOVI (P81379) Cytochrome c1 precursor| Length = 282 Score = 52.8 bits (125), Expect = 5e-07 Identities = 23/46 (50%), Positives = 30/46 (65%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMG 353 M + DG + Y DGTP T+ Q KDV +FL WAAEP ++ RK +G Sbjct: 207 MTPPIADGLVTYGDGTPETQLQYSKDVAAFLMWAAEPTLDVRKRIG 252
>CY1_RHOSH (Q02760) Cytochrome c1 precursor| Length = 285 Score = 51.2 bits (121), Expect = 1e-06 Identities = 26/75 (34%), Positives = 37/75 (49%) Frame = -3 Query: 490 MPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXX 311 MP LMD +EY DG A+ M +DV +FL WAAEP++ RK G + Sbjct: 207 MPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLL 266 Query: 310 AYYRRMRWSVLKSRK 266 + W+ +K +K Sbjct: 267 YLTNKRLWAGVKGKK 281
>RSH1_MAIZE (Q41853) Homeobox protein rough sheath 1| Length = 351 Score = 29.3 bits (64), Expect = 6.0 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 17/90 (18%) Frame = +2 Query: 38 RYQLAKKYSKITAPLREMLLQQRKKTKEIVPK------V*W-----------ETTRVAKY 166 +YQL KKYS + LR+ +++KK K +PK + W ET ++A Sbjct: 234 KYQLLKKYSGYLSSLRQEFSKKKKKGK--LPKEARQKLLHWWELHYKWPYPSETEKIA-- 289 Query: 167 TTESPYFDRFCLKTRCCNRKKKQWSLVDDV 256 ES D+ + N++K+ W +D+ Sbjct: 290 LAESTGLDQKQINNWFINQRKRHWKPSEDM 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,555,442 Number of Sequences: 219361 Number of extensions: 1373137 Number of successful extensions: 3555 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3553 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
