ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38b11 |
|---|---|
| Clone Library Name | barley_pub |
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 112 bits (279), Expect = 4e-25 Identities = 57/58 (98%), Positives = 57/58 (98%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 HTLDPLTLVKARINNSGKASALIQHEF PKSLCTISAEVDTKAIEKSSKVGIAIALKP Sbjct: 218 HTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 102 bits (253), Expect = 5e-22 Identities = 50/58 (86%), Positives = 56/58 (96%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 HTLDPLT+VKAR NNSGKASAL+QHE+RPKS+ TISAEVDTKAI+KSSKVGIA+ALKP Sbjct: 216 HTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 273
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 95.1 bits (235), Expect = 6e-20 Identities = 45/58 (77%), Positives = 53/58 (91%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 H LDPLT VK R+ NSGKASALIQHE+RPKSL TIS+EVDTKAIEKS+K+G+++ALKP Sbjct: 218 HALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 275
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 94.0 bits (232), Expect = 1e-19 Identities = 45/58 (77%), Positives = 53/58 (91%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 H LDPLT VKAR+N+ GKASALIQHE+RPKSL TIS EVDT+AIEKS+K+G+A+ALKP Sbjct: 218 HLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 275
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 90.9 bits (224), Expect = 1e-18 Identities = 43/58 (74%), Positives = 52/58 (89%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 H LDPLT VKAR+NN+G A+ALIQHE+RPKS T+S EVD+KAI+KS+KVGIA+ALKP Sbjct: 216 HALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 273
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 89.7 bits (221), Expect = 2e-18 Identities = 42/58 (72%), Positives = 51/58 (87%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 H LDPLT VKARINN GKASAL+QHE+RPKSL T+S EVDTK+++K +K G+A+ALKP Sbjct: 218 HRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 275
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 88.6 bits (218), Expect = 5e-18 Identities = 42/58 (72%), Positives = 53/58 (91%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 H+LDPLT VKAR+N++G ASALIQHE++PKS TIS EVDTK+I+KS+KVG+A+ALKP Sbjct: 218 HSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 275
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 81.6 bits (200), Expect = 6e-16 Identities = 38/57 (66%), Positives = 47/57 (82%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALK 244 H+LDP T +K R NN G ASAL+QHE+RPKS TIS +VDTKAIEKS+KVG+++ LK Sbjct: 220 HSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276
>VDAC2_RABIT (P68003) Voltage-dependent anion-selective channel protein 2 (Outer| mitochondrial membrane protein porin 2) Length = 294 Score = 35.0 bits (79), Expect = 0.068 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 + LDP + A++NNS RP T+SA VD K+I K+G+A+ L+ Sbjct: 236 YQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELE 293
>VDAC2_PIG (Q9MZ15) Voltage-dependent anion-selective channel protein 2| Length = 294 Score = 35.0 bits (79), Expect = 0.068 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 + LDP + A++NNS RP T+SA VD K+I K+G+A+ L+ Sbjct: 236 YQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELE 293
>VDAC2_BOVIN (P68002) Voltage-dependent anion-selective channel protein 2 (Outer| mitochondrial membrane protein porin 2) Length = 294 Score = 35.0 bits (79), Expect = 0.068 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 + LDP + A++NNS RP T+SA VD K+I K+G+A+ L+ Sbjct: 236 YQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELE 293
>VDAC2_RAT (P81155) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (Outer mitochondrial membrane protein porin 2) (B36-VDAC) Length = 295 Score = 33.5 bits (75), Expect = 0.20 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 + LDP + A++NNS RP T+SA VD K+ K+G+A+ L+ Sbjct: 237 YQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSFNAGGHKLGLALELE 294
>VDAC2_MOUSE (Q60930) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (mVDAC2) (mVDAC6) (Outer mitochondrial membrane protein porin 2) Length = 295 Score = 33.5 bits (75), Expect = 0.20 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 + LDP + A++NNS RP T+SA VD K+ K+G+A+ L+ Sbjct: 237 YQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSFNAGGHKLGLALELE 294
>TRPC_STAHJ (Q4L677) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 260 Score = 33.1 bits (74), Expect = 0.26 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = +3 Query: 57 DRHYTDQRQNSSGMKHGSSSNLTDC----DNAPKACEVFVKSP 173 D +Y D+ QN G+KH + S LTD DN E+ KSP Sbjct: 17 DGYYHDKLQNLKGVKHKNKSRLTDALIKNDNLTLIAEIKSKSP 59
>UVRC_LACJO (Q74JN8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 600 Score = 32.3 bits (72), Expect = 0.44 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +2 Query: 50 LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SI--CQIATIPSETE 193 +NG ++ K+K L+N R +FKS ++ +RA+ V I I T+ S+ E Sbjct: 25 VNGNVIYVGKSKNLKNRVRSYFKSKQVGRRAELVREIRDFDIITVSSDKE 74
>COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2345 Score = 31.6 bits (70), Expect = 0.76 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 166 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 306 N D I N L ++++EG +SP+ + S+ +DL AL DGL H+R Sbjct: 28 NSEDEISNL-VKLDLEEKEGSLSPASVSSDTLSDLGISALQDGLAFHMR 75
>VDAC2_HUMAN (P45880) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (hVDAC2) (Outer mitochondrial membrane protein porin 2) Length = 347 Score = 31.6 bits (70), Expect = 0.76 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVG 262 + LDP + A++NNS RP T+SA VD K+I KVG Sbjct: 251 YQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVG 302
>UVRC_LACAC (Q5FKH6) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 600 Score = 31.2 bits (69), Expect = 0.99 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +2 Query: 50 LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SI--CQIATIPSETE 193 +NG ++ K+K L+N R +FKS ++ +RA+ V I I T+ ++ E Sbjct: 25 INGTVIYVGKSKNLKNRVRSYFKSKQVGRRAELVREIRDYDIITVSTDKE 74
>COA1_HUMAN (Q13085) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 30.8 bits (68), Expect = 1.3 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 166 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 306 N D I N ++++EG +SP+ + S+ +DL AL DGL +H+R Sbjct: 28 NSEDEISNLVKLDLLEEKEGSLSPASVGSDTLSDLGISALQDGLALHIR 76
>PER2_RAT (Q9Z301) Period circadian protein 2 (rPER2)| Length = 1257 Score = 30.8 bits (68), Expect = 1.3 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +3 Query: 72 DQRQNSSGMKH---GSSSNLTDCDNAPKACEVFVKSPRFHPKPRNT 200 D SSG ++ G S +DCD++ K + V+S HP P +T Sbjct: 33 DMSSGSSGNENCSTGRDSQGSDCDDSGKELRMLVESSNTHPSPDDT 78
>VDAC2_MELGA (P82013) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (Outer mitochondrial membrane protein porin 2) Length = 282 Score = 30.4 bits (67), Expect = 1.7 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 + LD + A++NNS RP T+SA +D K+I K+G+ + L+ Sbjct: 224 YKLDSTASISAKVNNSSLVGVGYTQTLRPGVKLTLSALIDGKSINAGGHKLGLGLELE 281
>COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 30.4 bits (67), Expect = 1.7 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 166 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 306 N D I N ++++EG +SP+ + S+ +DL +L DGL +H+R Sbjct: 28 NSEDEISNLVKLDLLEEKEGSLSPASVSSDTLSDLGISSLQDGLALHMR 76
>COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 30.4 bits (67), Expect = 1.7 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 166 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 306 N D I N ++++EG +SP+ + S+ +DL +L DGL +H+R Sbjct: 28 NSEDEISNLVKLDLLEEKEGSLSPASVSSDTLSDLGISSLQDGLALHMR 76
>UVRC_LACPL (Q88VE9) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 604 Score = 30.0 bits (66), Expect = 2.2 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +2 Query: 50 LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SICQIATIPSETEE 196 LN Q ++ K K L+N R +FKS+ + A+ V I I + T++ Sbjct: 25 LNSQIIYVGKAKNLKNRVRSYFKSSHTGKTARLVSEIADFEFIVTSTDK 73
>MPP9_HUMAN (Q99550) M-phase phosphoprotein 9| Length = 692 Score = 29.6 bits (65), Expect = 2.9 Identities = 19/61 (31%), Positives = 24/61 (39%) Frame = +3 Query: 57 DRHYTDQRQNSSGMKHGSSSNLTDCDNAPKACEVFVKSPRFHPKPRNTPESSEKRGLDFA 236 D +Y QR+N K NLT N EV P H KP+ + GL A Sbjct: 56 DIYYKKQREN----KQLPERNLTSASNPNHPPEVLTLDPTLHMKPKQQISGIQPHGLPNA 111 Query: 237 I 239 + Sbjct: 112 L 112
>VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protein porin| Length = 282 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAI-EKSSKVGIAIA 250 + LD T VK +IN++G A+ RP + ++DT+ + + + K G+++A Sbjct: 224 YALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSLA 279
>UVRC_LACSS (Q38WS5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 592 Score = 29.6 bits (65), Expect = 2.9 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +2 Query: 50 LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SICQIATIPSETEE 196 +N Q ++ K K L+N R +FKS+ + A+ V I TI + T + Sbjct: 25 INAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNK 73
>VDAC2_XENLA (P81004) Voltage-dependent anion-selective channel protein 2 (Outer| mitochondrial membrane protein porin) Length = 282 Score = 29.3 bits (64), Expect = 3.7 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 + LD + A++NNS RP T+SA VD K I K+G+ + L+ Sbjct: 224 YQLDSHAAISAKVNNSSLVGVGYTQTLRPGVKLTLSALVDGKNINAGGHKLGLGLELE 281
>VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin| Length = 283 Score = 28.9 bits (63), Expect = 4.9 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Frame = -1 Query: 414 HTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 + +DP++ VK +IN+ G A+ R + A DT+ +++++ KVG + + Sbjct: 225 YRIDPVSFVKGKINDRGVAAIAYNVLLREGVTLGVGASFDTQKLDQATHKVGTSFTFE 282
>PER2_MOUSE (O54943) Period circadian protein 2 (mPER2)| Length = 1257 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = +3 Query: 72 DQRQNSSGMKH---GSSSNLTDCDNAPKACEVFVKSPRFHPKP 191 D SSG ++ G S +DCD+ K + V+S HP P Sbjct: 33 DMSSGSSGNENCSTGRDSQGSDCDDNGKELRMLVESSNTHPSP 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,126,788 Number of Sequences: 219361 Number of extensions: 937937 Number of successful extensions: 3152 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3152 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
