ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATC4_YEAST (Q12675) Probable phospholipid-transporting ATPase DN... 31 0.92
2ATC5_YEAST (P32660) Probable phospholipid-transporting ATPase DN... 31 0.92

>ATC4_YEAST (Q12675) Probable phospholipid-transporting ATPase DNF2 (EC 3.6.3.1)|
          Length = 1612

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 8    VNAIIPYFYSGGN*IHSWGYIKFI*SSYVWTCTKGMYMNIICFF 139
            V+ ++P  Y  G     W   KF+     W    G+Y ++ICFF
Sbjct: 1291 VSMLVPQLYRVGILRKEWNQTKFL-----WYMLDGVYQSVICFF 1329



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>ATC5_YEAST (P32660) Probable phospholipid-transporting ATPase DNF1 (EC 3.6.3.1)|
          Length = 1571

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 8    VNAIIPYFYSGGN*IHSWGYIKFI*SSYVWTCTKGMYMNIICFF 139
            ++ ++P  Y  G     W   KF+     W    G+Y +IICFF
Sbjct: 1248 ISLVVPQLYRVGILRKEWNQRKFL-----WYMLDGLYQSIICFF 1286


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,342,693
Number of Sequences: 219361
Number of extensions: 805322
Number of successful extensions: 1236
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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