ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart38b09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene) Length = 915 Score = 276 bits (139), Expect = 5e-71 Identities = 154/159 (96%) Strand = Plus / Minus Query: 202 tcaggcgtaatacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 261 ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 915 tcaggcgtagtacttgatcaagctgctgtagttggtctgcttgtcgaagtatcggtccca 856 Query: 262 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagac 321 ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| Sbjct: 855 gagcatgatgccgccgtagttgtccttcttctgcgccaccggcgcgacgccgtagtagac 796 Query: 322 gttcttggggtgtacccactggtaggacttgtcgtccgc 360 ||||||||||||||||||||||| ||||||||||||||| Sbjct: 795 gttcttggggtgtacccactggtgggacttgtcgtccgc 757
>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III, complete cds Length = 934 Score = 174 bits (88), Expect = 1e-40 Identities = 139/156 (89%) Strand = Plus / Minus Query: 202 tcaggcgtaatacttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtccca 261 ||||||||| |||||||| |||| ||||||| | |||||||||||||||| |||||||| Sbjct: 932 tcaggcgtagtacttgatgtagctactgtagtcgctctgcttgtcgaagtatcggtccca 873 Query: 262 gagcatgatgccgccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagac 321 |||||||| |||||||||||||||||||||||| |||||||| || || ||||||||| Sbjct: 872 gagcatgaccccgccgtagttgtccttcttctgcaccaccggcgtgatgccgtagtagac 813 Query: 322 gttcttggggtgtacccactggtaggacttgtcgtc 357 |||||||||||||| ||||||||| ||||| ||||| Sbjct: 812 gttcttggggtgtatccactggtacgacttctcgtc 777
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 101 bits (51), Expect = 2e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 214 cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 273 ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| ||| Sbjct: 14484656 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 14484715 Query: 274 gccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagacgttcttggggtg 333 ||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 14484716 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 14484775 Query: 334 tacccac 340 |||||| Sbjct: 14484776 cacccac 14484782
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 101 bits (51), Expect = 2e-18 Identities = 108/127 (85%) Strand = Plus / Plus Query: 214 cttgatcaagctgctgtagttggtctgcttgtcgaagtaccggtcccagagcatgatgcc 273 ||||| || |||| |||||||| || |||||||| |||| |||||||||| ||||| ||| Sbjct: 77830 cttgaccatgctggtgtagttgctcagcttgtcgtagtatcggtcccagatcatgaagcc 77889 Query: 274 gccgtagttgtccttcttctgcgacaccggcgcgacgctgtagtagacgttcttggggtg 333 ||||||||||||| |||||||| ||| |||||| ||||||||||||||||||||| Sbjct: 77890 gccgtagttgtccgccttctgcgtggacggggcgacgtcgtagtagacgttcttggggtg 77949 Query: 334 tacccac 340 |||||| Sbjct: 77950 cacccac 77956
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 82293 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 82246 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 241 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 88121 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 88163 Score = 42.1 bits (21), Expect = 1.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 243 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 83663 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 83703
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 28123738 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28123691 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 241 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 28129566 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28129608 Score = 42.1 bits (21), Expect = 1.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 243 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 28125108 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28125148
>dbj|AK102862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111J19, full insert sequence Length = 1176 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 988 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 941
>dbj|AK063939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-E01, full insert sequence Length = 1234 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 989 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 942
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 28108616 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 28108569 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 241 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 28114444 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 28114486 Score = 42.1 bits (21), Expect = 1.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 243 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 28109986 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 28110026
>dbj|D55712.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1220 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 963 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 916
>dbj|AB027420.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C60571 Length = 1220 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 975 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 928
>dbj|AB027419.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C11701 Length = 1171 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 933 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 886
>dbj|AB027418.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C12269 Length = 1214 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 973 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 926
>dbj|AB027417.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds, clone:C3540 Length = 1229 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 972 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 925
>dbj|AB027416.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-a), complete cds,clone:C10295 Length = 1199 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 954 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 907
>dbj|AB027415.1| Oryza sativa (japonica cultivar-group) mRNA for class III chitinase homologue (OsChib3H-a)H-, complete cds, clone:C60129 Length = 1187 Score = 56.0 bits (28), Expect = 8e-05 Identities = 43/48 (89%) Strand = Plus / Minus Query: 235 ggtctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagtt 282 ||||||||||||| || ||| ||||||||||||||| ||||| ||||| Sbjct: 957 ggtctgcttgtcgtagaacctgtcccagagcatgattccgccatagtt 910
>dbj|AK102649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101A20, full insert sequence Length = 1162 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 241 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 927 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 885
>dbj|AK101155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033027E14, full insert sequence Length = 1193 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 241 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 931 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 889
>dbj|AK073595.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048M21, full insert sequence Length = 1153 Score = 54.0 bits (27), Expect = 3e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 241 cttgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||| |||| || ||||||||||||| ||||||||||||| Sbjct: 918 cttgtcgtagtagcgatcccagagcatgacgccgccgtagttg 876
>ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 951 Score = 48.1 bits (24), Expect = 0.020 Identities = 57/68 (83%) Strand = Plus / Minus Query: 237 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 296 ||||||||||| ||| || ||||||| ||||| ||||||||||||| || ||||||| Sbjct: 916 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 857 Query: 297 acaccggc 304 || ||||| Sbjct: 856 actccggc 849
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.020 Identities = 57/68 (83%) Strand = Plus / Minus Query: 237 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 296 ||||||||||| ||| || ||||||| ||||| ||||||||||||| || ||||||| Sbjct: 26162477 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 26162418 Query: 297 acaccggc 304 || ||||| Sbjct: 26162417 actccggc 26162410
>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full insert sequence Length = 1165 Score = 48.1 bits (24), Expect = 0.020 Identities = 57/68 (83%) Strand = Plus / Minus Query: 237 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 296 ||||||||||| ||| || ||||||| ||||| ||||||||||||| || ||||||| Sbjct: 964 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 905 Query: 297 acaccggc 304 || ||||| Sbjct: 904 actccggc 897
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 48.1 bits (24), Expect = 0.020 Identities = 57/68 (83%) Strand = Plus / Minus Query: 237 tctgcttgtcgaagtaccggtcccagagcatgatgccgccgtagttgtccttcttctgcg 296 ||||||||||| ||| || ||||||| ||||| ||||||||||||| || ||||||| Sbjct: 54335 tctgcttgtcgctgtagcgatcccagatcatgaagccgccgtagttggccgccttctgca 54276 Query: 297 acaccggc 304 || ||||| Sbjct: 54275 actccggc 54268
>ref|XM_792322.1| PREDICTED: Strongylocentrotus purpuratus similar to putative endoplasmic reticulum protein, with at least 5 transmembrane domains, of eukaryotic origin (56.3 kD) (4P439) (LOC592817), mRNA Length = 1917 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 ctgctgtagttggtctgcttgt 245 |||||||||||||||||||||| Sbjct: 86 ctgctgtagttggtctgcttgt 107
>gb|S82314.1| PRm 3=chitinase {clone CHEM 5} [Zea mays=maize, cv. INRA 258, mercuric chloride-treated, leaves, mRNA Partial, 945 nt] Length = 945 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 254 cggtcccagagcatgatgccgccgtagttg 283 |||||||| | ||||||||||||||||||| Sbjct: 870 cggtcccacaccatgatgccgccgtagttg 841
>gb|AY107125.1| Zea mays PCO125117 mRNA sequence Length = 1252 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Minus Query: 254 cggtcccagagcatgatgccgccgtagttg 283 |||||||| | ||||||||||||||||||| Sbjct: 928 cggtcccacaccatgatgccgccgtagttg 899
>gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome 12, complete sequence Length = 187364 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 88 caactgttcaattatttttat 108 ||||||||||||||||||||| Sbjct: 126677 caactgttcaattatttttat 126657
>emb|BX294141.1| Pirellula sp. strain 1 complete genome; segment 9/24 Length = 299350 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 210 aatacttgatcaagctgctgt 230 ||||||||||||||||||||| Sbjct: 278746 aatacttgatcaagctgctgt 278766
>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full insert sequence Length = 1161 Score = 42.1 bits (21), Expect = 1.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 243 tgtcgaagtaccggtcccagagcatgatgccgccgtagttg 283 ||||||||| |||| |||||||| || ||||||||||||| Sbjct: 940 tgtcgaagtgtcggttccagagcacgacgccgccgtagttg 900
>gb|AF069442.1| Arabidopsis thaliana BAC T4I9, chromosome IV, near 17 cM, complete sequence Length = 98913 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 aactgttcaattatttttatttat 112 |||| ||||||||||||||||||| Sbjct: 80781 aacttttcaattatttttatttat 80804
>emb|CR661974.2|CNS0F9R0 Tetraodon nigroviridis full-length cDNA Length = 1323 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 attatttttatttatccaag 117 |||||||||||||||||||| Sbjct: 1060 attatttttatttatccaag 1079
>emb|AL356253.7| Human DNA sequence from clone RP11-318C5 on chromosome 13, complete sequence Length = 200638 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 ctgttcaattatttttattt 110 |||||||||||||||||||| Sbjct: 46746 ctgttcaattatttttattt 46727
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 aattatttttatttatccaa 116 |||||||||||||||||||| Sbjct: 201408 aattatttttatttatccaa 201427
>emb|AL391143.1|ATT20K14 Arabidopsis thaliana DNA chromosome 5, BAC clone T20K14 (ESSA project) Length = 90176 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 aactgttcaattatttttatttat 112 |||| ||||||||||||||||||| Sbjct: 69097 aacttttcaattatttttatttat 69074
>emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31 Length = 198301 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 aactgttcaattatttttatttat 112 |||| ||||||||||||||||||| Sbjct: 156353 aacttttcaattatttttatttat 156330
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7 Length = 199615 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 aactgttcaattatttttatttat 112 |||| ||||||||||||||||||| Sbjct: 148321 aacttttcaattatttttatttat 148298
>emb|AL096882.2|ATF8L21 Arabidopsis thaliana DNA chromosome 4, BAC clone F8L21 (ESSA project) Length = 98948 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 aactgttcaattatttttatttat 112 |||| ||||||||||||||||||| Sbjct: 83347 aacttttcaattatttttatttat 83324
>gb|AC107025.3| Homo sapiens 3 BAC RP11-474M18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178033 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 aattatttttatttatccaa 116 |||||||||||||||||||| Sbjct: 124692 aattatttttatttatccaa 124711
>emb|AL845544.11| Zebrafish DNA sequence from clone BUSM1-133F4 in linkage group 7 Contains three CpG islands, complete sequence Length = 110786 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 caatacatcagaatcaaatc 166 |||||||||||||||||||| Sbjct: 43424 caatacatcagaatcaaatc 43405
>dbj|AP005645.1| Streptomyces avermitilis MA-4680 plasmid SAP1 DNA, complete sequence Length = 94287 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 262 gagcatgatgccgccgtagttgtccttc 289 ||||||||||| |||| ||||||||||| Sbjct: 66383 gagcatgatgcggccggagttgtccttc 66356
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 290 ttctgcgacaccggcgcgac 309 |||||||||||||||||||| Sbjct: 5735197 ttctgcgacaccggcgcgac 5735178
>dbj|AB012245.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRA19 Length = 86722 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 aactgttcaattatttttatttat 112 |||| ||||||||||||||||||| Sbjct: 58649 aacttttcaattatttttatttat 58672
>gb|AC160641.2| Ornithorhynchus anatinus BAC clone OABb-469P24 from chromosome unknown, complete sequence Length = 128941 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 98 attatttttatttatccaagtaca 121 ||||| |||||||||||||||||| Sbjct: 66721 attatctttatttatccaagtaca 66744
>dbj|AP007300.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT29K22, TM0275, complete sequence Length = 104570 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ttcaattatttttatttatc 113 |||||||||||||||||||| Sbjct: 16541 ttcaattatttttatttatc 16560 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,315,613 Number of Sequences: 3902068 Number of extensions: 3315613 Number of successful extensions: 102137 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101965 Number of HSP's gapped (non-prelim): 170 length of query: 360 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 338 effective length of database: 17,147,199,772 effective search space: 5795753522936 effective search space used: 5795753522936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
