>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)|
          Length = 303

 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 30/41 (73%), Positives = 33/41 (80%), Gaps = 4/41 (9%)
 Frame = -3

Query: 441 PAKKVGKTPATSDK----SPKSGGSVACKSCTKTFNSEVAL 331
           PAK  GKTPA +DK    SPKSGGSV CKSC+KTFNSE+AL
Sbjct: 254 PAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMAL 292

>HD2A_MAIZE (O24591) Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone|
           deacetylase HD2-p39)
          Length = 307

 Score = 42.4 bits (98), Expect = 5e-04
 Identities = 25/44 (56%), Positives = 28/44 (63%), Gaps = 7/44 (15%)
 Frame = -3

Query: 441 PAKKVGKTPATSDKS-------PKSGGSVACKSCTKTFNSEVAL 331
           PAK  GKT   +DKS       PKSGGSV CK C+K+F SE AL
Sbjct: 250 PAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETAL 291

>HD2A_SOYBN (Q8LJS2) Histone deacetylase 2a (HD2a) (Nucleolar histone|
           deacetylase HD2-p39)
          Length = 295

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -3

Query: 441 PAKKVGKTP-ATSDKSPKSGGSVACKSCTKTFNSEVAL 331
           P+KK GKTP +T  ++P S G ++C SC K+F +E  L
Sbjct: 247 PSKKGGKTPNSTKGQTPNSAGQLSCASCKKSFTNEAGL 284

>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)|
          Length = 294

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
 Frame = -3

Query: 441 PAKKVGK------TPATS--DKSPKSGGSVACKSCTKTFNSEVALAS 325
           P+K+ GK      T  TS   ++PKS G+  CKSCT+TF SE+ L S
Sbjct: 238 PSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMGLQS 284

>HD2A_ARATH (Q9FVE6) Histone deacetylase 2a (HD-tuins protein 1)|
          Length = 245

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 20/37 (54%), Positives = 24/37 (64%)
 Frame = -3

Query: 435 KKVGKTPATSDKSPKSGGSVACKSCTKTFNSEVALAS 325
           KK GK    +++SPKS   V+C SC KTFNS  AL S
Sbjct: 202 KKGGKA---ANQSPKSASQVSCGSCKKTFNSGNALES 235

>HD2B_ARATH (Q56WH4) Histone deacetylase 2b (HD-tuins protein 2)|
          Length = 306

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -3

Query: 441 PAKKVGKTPATSDKSPKSGG-SVACKSCTKTFNS 343
           PAKK GK+P  +++SPKSGG S    +  K FNS
Sbjct: 252 PAKKGGKSPVNANQSPKSGGQSSGGNNNKKPFNS 285

>HD2C_MAIZE (Q9M4U4) Histone deacetylase 2c (HD2c) (Zm-HD2c)|
          Length = 300

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 22/41 (53%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
 Frame = -3

Query: 441 PAKKVGKTPATSDKSPKSGGS-----VACKSCTKTFNSEVA 334
           PAK  GKT   +DKS KS  S     V CKSC+K+F SE A
Sbjct: 250 PAK--GKTIVNNDKSVKSPKSAPKSGVPCKSCSKSFISETA 288

>HD2A_SOLCH (Q6V9I6) Histone deacetylase 2a (HD2a) (ScHD2a)|
          Length = 269

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 408 SDKSPKSGGSVACKSCTKTFNSEVALAS 325
           + K+PKS GS  CK C ++F SE AL S
Sbjct: 232 ASKTPKSAGSHHCKPCNRSFGSEGALDS 259

>I23O_HUMAN (P14902) Indoleamine 2,3-dioxygenase (EC 1.13.11.42) (IDO)|
           (Indoleamine-pyrrole 2,3-dioxygenase)
          Length = 403

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 367 LAGHRPSRLGRLVAGCWGLAYLLGR 441
           L  H+  RL RLV GC  +AY+ G+
Sbjct: 70  LTDHKSQRLARLVLGCITMAYVWGK 94

>LSG1_HAEIN (P71399) Lsg locus putative protein 1|
          Length = 401

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 222 FLPYETISYAGVLGSLSIIYVVVFPT 145
           F   + I YAG++GSLSII ++ F T
Sbjct: 369 FTEIKYIPYAGIIGSLSIIPILYFMT 394


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,571,252
Number of Sequences: 219361
Number of extensions: 1017032
Number of successful extensions: 2698
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2698
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)