ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, comp... 44 0.38
2gb|AC131596.10| Mus musculus chromosome 10, clone RP23-476G10, c... 44 0.38
3gb|AC108819.15| Mus musculus chromosome 14, clone RP23-474O16, c... 44 0.38
4gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, com... 44 0.38
5gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, com... 44 0.38
6dbj|BS000583.2| Pan troglodytes chromosome Y clone:PTB-614F22, c... 44 0.38
7dbj|BS000631.2| Pan troglodytes chromosome Y clone: PTB-395F06, ... 44 0.38
8dbj|BS000652.2| Pan troglodytes chromosome Y clone: PTBY-013L08,... 44 0.38
9gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 44 0.38
10gb|AC006999.2|AC006999 Homo sapiens BAC clone RP11-462A19 from Y... 44 0.38
11gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.5
12gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
13gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, comp... 42 1.5
14gb|AY363979.1| Xiphinema index microsatellite XIMSL4 locus 5 all... 42 1.5
15gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, co... 42 1.5
16ref|XM_567845.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 1.5
17emb|CR361556.8| Zebrafish DNA sequence from clone DKEY-97G1 in l... 42 1.5
18gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map... 42 1.5
19gb|AC112917.3| Homo sapiens X BAC RP11-46C18 (Roswell Park Cance... 42 1.5
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
21gb|AC007388.4| Homo sapiens BAC clone RP11-395B14 from 2, comple... 42 1.5
22gb|AC090652.32| Mus musculus strain C57BL/6J chromosome 7 clone ... 42 1.5
23gb|AC101764.11| Mus musculus chromosome 3, clone RP24-471B15, co... 42 1.5
24gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
25emb|AL929086.7| Zebrafish DNA sequence from clone CH211-130K1 in... 42 1.5
26gb|AC146980.9| Mus musculus chromosome 3, clone RP24-97N14, comp... 40 6.0
27gb|AF154053.1| Lyciasalamandra atifi mitochondrion, complete genome 40 6.0
28gb|AC163686.3| Mus musculus BAC clone RP23-3C10 from chromosome ... 40 6.0
29gb|AC115937.14| Mus musculus chromosome 5, clone RP24-547J21, co... 40 6.0
30gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, co... 40 6.0
31gb|AC150650.5| Bos taurus BAC CH240-447L3 (Children's Hospital ... 40 6.0
32gb|AC046160.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 6.0
33emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on ch... 40 6.0
34emb|CR955005.2| Medicago truncatula chromosome 5 clone mte1-58c2... 40 6.0
35gb|AC122300.3| Mus musculus BAC clone RP23-275E20 from 7, comple... 40 6.0
36gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome... 40 6.0
37gb|AC096639.2| Homo sapiens chromosome 1 clone RP11-323I1, compl... 40 6.0
38gb|AC137669.12| Medicago truncatula clone mth2-27m3, complete se... 40 6.0
39gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, com... 40 6.0
40gb|AF195773.1|AF195773 Aspergillus nidulans MpkCp (mpkC) gene, c... 40 6.0
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
42dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43gb|AC020655.10| Homo sapiens 3 BAC RP11-15B4 (Roswell Park Cance... 40 6.0
44gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosom... 40 6.0
45gb|AC011700.5|AC011700 Homo sapiens Chromosome 1 BAC RP11-478J18... 40 6.0
46gb|AC007653.5|AC007653 Homo sapiens chromosome , clone RP11-51A1... 40 6.0
47emb|AL928976.4| Zebrafish DNA sequence from clone CH211-134B16, ... 40 6.0
48gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complet... 40 6.0
49emb|BX469895.7| Zebrafish DNA sequence from clone DKEY-152C18 in... 40 6.0
50gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Canc... 40 6.0
51emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in... 40 6.0
52dbj|AP001001.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.0
53dbj|AP000813.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.0
54emb|BX537665.1|HSM806557 Homo sapiens mRNA; cDNA DKFZp686B1090 (... 40 6.0
55gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, comple... 40 6.0
56gb|AC122892.4| Mus musculus BAC clone RP23-66P19 from 8, complet... 40 6.0 
>gb|AC125025.7| Mus musculus chromosome 5, clone RP24-340K5, complete sequence
          Length = 175313

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 24    catagcatagcatagcatacca 45
             ||||||||||||||||||||||
Sbjct: 72296 catagcatagcatagcatacca 72317
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>gb|AC131596.10| Mus musculus chromosome 10, clone RP23-476G10, complete sequence
          Length = 178668

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 24     catagcatagcatagcatacca 45
              ||||||||||||||||||||||
Sbjct: 103347 catagcatagcatagcatacca 103368
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>gb|AC108819.15| Mus musculus chromosome 14, clone RP23-474O16, complete sequence
          Length = 195771

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 24    catagcatagcatagcatacca 45
             ||||||||||||||||||||||
Sbjct: 21266 catagcatagcatagcatacca 21287



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atcatagcatagcatagcata 42
             |||||||||||||||||||||
Sbjct: 21234 atcatagcatagcatagcata 21254
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>gb|AC165316.4| Mus musculus chromosome 5, clone RP23-168G13, complete sequence
          Length = 205237

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 24     catagcatagcatagcatacca 45
              ||||||||||||||||||||||
Sbjct: 154088 catagcatagcatagcatacca 154109
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>gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, complete sequence
          Length = 174522

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 24   catagcatagcatagcatacca 45
            ||||||||||||||||||||||
Sbjct: 4239 catagcatagcatagcatacca 4260
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>dbj|BS000583.2| Pan troglodytes chromosome Y clone:PTB-614F22, complete sequence
          Length = 158476

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 24     catagcatagcatagcatacca 45
              ||||||||||||||||||||||
Sbjct: 141657 catagcatagcatagcatacca 141636
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>dbj|BS000631.2| Pan troglodytes chromosome Y clone: PTB-395F06, complete sequence
          Length = 123227

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 24    catagcatagcatagcatacca 45
             ||||||||||||||||||||||
Sbjct: 22898 catagcatagcatagcatacca 22877
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>dbj|BS000652.2| Pan troglodytes chromosome Y clone: PTBY-013L08, complete sequence
          Length = 134024

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 24    catagcatagcatagcatacca 45
             ||||||||||||||||||||||
Sbjct: 14912 catagcatagcatagcatacca 14891
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 24       catagcatagcatagcatacca 45
                ||||||||||||||||||||||
Sbjct: 16830327 catagcatagcatagcatacca 16830348
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>gb|AC006999.2|AC006999 Homo sapiens BAC clone RP11-462A19 from Y, complete sequence
          Length = 112878

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 24    catagcatagcatagcatacca 45
             ||||||||||||||||||||||
Sbjct: 26599 catagcatagcatagcatacca 26578
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>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete
              sequence
          Length = 1019846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     tcatagcatagcatagcatac 43
              |||||||||||||||||||||
Sbjct: 499254 tcatagcatagcatagcatac 499234
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>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C16, complete sequence
          Length = 137872

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 214   gggcaagaacacatcaatcaaaata 238
             ||||||||||||||||||| |||||
Sbjct: 67495 gggcaagaacacatcaatctaaata 67471
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>gb|AC121499.9| Mus musculus chromosome 9, clone RP23-269E5, complete sequence
          Length = 212061

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 250   aacccagccagccaaccaaca 270
             |||||||||||||||||||||
Sbjct: 80204 aacccagccagccaaccaaca 80224
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>gb|AY363979.1| Xiphinema index microsatellite XIMSL4 locus 5 allele 1 sequence
          Length = 320

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 22 atcatagcatagcatagcata 42
          |||||||||||||||||||||
Sbjct: 75 atcatagcatagcatagcata 55
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>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence
          Length = 204108

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 249    caacccagccagccaaccaac 269
              |||||||||||||||||||||
Sbjct: 128872 caacccagccagccaaccaac 128852
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>ref|XM_567845.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNK01700) partial mRNA
          Length = 3369

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 23   tcatagcatagcatagcatac 43
            |||||||||||||||||||||
Sbjct: 3279 tcatagcatagcatagcatac 3299
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>emb|CR361556.8| Zebrafish DNA sequence from clone DKEY-97G1 in linkage group 24,
             complete sequence
          Length = 106934

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atcatagcatagcatagcata 42
             |||||||||||||||||||||
Sbjct: 23171 atcatagcatagcatagcata 23191
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>gb|AC090122.26| Mus musculus strain C57BL/6J clone rp23-28a7 map 7, complete sequence
          Length = 212485

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 24     catagcatagcatagcataccacca 48
              ||||||||||||||||||| |||||
Sbjct: 170572 catagcatagcatagcatagcacca 170548
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>gb|AC112917.3| Homo sapiens X BAC RP11-46C18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 134089

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    atagcatagcatagcatacca 45
             |||||||||||||||||||||
Sbjct: 22193 atagcatagcatagcatacca 22213
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 214     gggcaagaacacatcaatcaaaata 238
               ||||||||||||||||||| |||||
Sbjct: 6396101 gggcaagaacacatcaatctaaata 6396077
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>gb|AC007388.4| Homo sapiens BAC clone RP11-395B14 from 2, complete sequence
          Length = 152155

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atcatagcatagcatagcata 42
             |||||||||||||||||||||
Sbjct: 81786 atcatagcatagcatagcata 81806
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>gb|AC090652.32| Mus musculus strain C57BL/6J chromosome 7 clone rp23-116a10, complete
              sequence
          Length = 228147

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 24     catagcatagcatagcataccacca 48
              ||||||||||||||||||| |||||
Sbjct: 219754 catagcatagcatagcatagcacca 219778
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>gb|AC101764.11| Mus musculus chromosome 3, clone RP24-471B15, complete sequence
          Length = 151388

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    atcatagcatagcatagcata 42
             |||||||||||||||||||||
Sbjct: 80142 atcatagcatagcatagcata 80122
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 214     gggcaagaacacatcaatcaaaata 238
               ||||||||||||||||||| |||||
Sbjct: 6462568 gggcaagaacacatcaatctaaata 6462544
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>emb|AL929086.7| Zebrafish DNA sequence from clone CH211-130K1 in linkage group 3,
              complete sequence
          Length = 174740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     atcatagcatagcatagcata 42
              |||||||||||||||||||||
Sbjct: 136218 atcatagcatagcatagcata 136238
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>gb|AC146980.9| Mus musculus chromosome 3, clone RP24-97N14, complete sequence
          Length = 161054

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     catagcatagcatagcatac 43
              ||||||||||||||||||||
Sbjct: 138649 catagcatagcatagcatac 138668



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     catagcatagcatagcatac 43
              ||||||||||||||||||||
Sbjct: 138606 catagcatagcatagcatac 138625
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>gb|AF154053.1| Lyciasalamandra atifi mitochondrion, complete genome
          Length = 16650

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   ataatagatagggagcctaa 186
             ||||||||||||||||||||
Sbjct: 10681 ataatagatagggagcctaa 10662
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>gb|AC163686.3| Mus musculus BAC clone RP23-3C10 from chromosome 6, complete sequence
          Length = 209207

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   catagcatagcatagcatac 43
            ||||||||||||||||||||
Sbjct: 7200 catagcatagcatagcatac 7219
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>gb|AC115937.14| Mus musculus chromosome 5, clone RP24-547J21, complete sequence
          Length = 215400

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 19     ttcatcatagcatagcatagcata 42
              |||| |||||||||||||||||||
Sbjct: 133882 ttcagcatagcatagcatagcata 133905
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>gb|AC102714.16| Mus musculus chromosome 5, clone RP24-298D13, complete sequence
          Length = 165774

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    aacccagccagccaaccaac 269
              ||||||||||||||||||||
Sbjct: 119896 aacccagccagccaaccaac 119915
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>gb|AC150650.5| Bos taurus  BAC CH240-447L3 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 148126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    catagcatagcatagcatac 43
             ||||||||||||||||||||
Sbjct: 22579 catagcatagcatagcatac 22560
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>gb|AC046160.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-130F23, complete
             sequence
          Length = 214627

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    catagcatagcatagcatac 43
             ||||||||||||||||||||
Sbjct: 74244 catagcatagcatagcatac 74225
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>emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on chromosome 13, complete
              sequence
          Length = 188616

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     catagcatagcatagcatac 43
              ||||||||||||||||||||
Sbjct: 127188 catagcatagcatagcatac 127169
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>emb|CR955005.2| Medicago truncatula chromosome 5 clone mte1-58c24, COMPLETE SEQUENCE
          Length = 106497

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    catcatagcatagcatagca 40
             ||||||||||||||||||||
Sbjct: 91333 catcatagcatagcatagca 91352
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>gb|AC122300.3| Mus musculus BAC clone RP23-275E20 from 7, complete sequence
          Length = 182032

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    tcatagcatagcatagcata 42
             ||||||||||||||||||||
Sbjct: 77486 tcatagcatagcatagcata 77505
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>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence
          Length = 211181

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    catagcatagcatagcatac 43
             ||||||||||||||||||||
Sbjct: 83294 catagcatagcatagcatac 83275
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>gb|AC096639.2| Homo sapiens chromosome 1 clone RP11-323I1, complete sequence
          Length = 195410

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    ttcaaagcttcatcatagca 30
             ||||||||||||||||||||
Sbjct: 24302 ttcaaagcttcatcatagca 24321
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>gb|AC137669.12| Medicago truncatula clone mth2-27m3, complete sequence
          Length = 120323

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 21   catcatagcatagcatagca 40
            ||||||||||||||||||||
Sbjct: 7663 catcatagcatagcatagca 7682
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>gb|AC158782.5| Mus musculus chromosome 5, clone RP23-134H19, complete sequence
          Length = 228458

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 250    aacccagccagccaaccaac 269
              ||||||||||||||||||||
Sbjct: 219039 aacccagccagccaaccaac 219058
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>gb|AF195773.1|AF195773 Aspergillus nidulans MpkCp (mpkC) gene, complete cds
          Length = 3266

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 24  catagcatagcatagcatac 43
           ||||||||||||||||||||
Sbjct: 385 catagcatagcatagcatac 366
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 217      caagaacacatcaatcaaaa 236
                ||||||||||||||||||||
Sbjct: 38831836 caagaacacatcaatcaaaa 38831855
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>dbj|AP003407.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1078G07
          Length = 199457

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    caagaacacatcaatcaaaa 236
              ||||||||||||||||||||
Sbjct: 104718 caagaacacatcaatcaaaa 104737
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>gb|AC020655.10| Homo sapiens 3 BAC RP11-15B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 145820

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    catcatagcatagcatagcatacc 44
             ||||||||||||||||||| ||||
Sbjct: 37256 catcatagcatagcatagcttacc 37279
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>gb|AC132956.4| Mus musculus BAC clone RP23-106K20 from chromosome 7, complete sequence
          Length = 195204

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 191    ccagcgtaactgatagtctc 210
              ||||||||||||||||||||
Sbjct: 159773 ccagcgtaactgatagtctc 159792
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>gb|AC011700.5|AC011700 Homo sapiens Chromosome 1 BAC RP11-478J18 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 154732

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     ttcaaagcttcatcatagca 30
              ||||||||||||||||||||
Sbjct: 128264 ttcaaagcttcatcatagca 128283
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>gb|AC007653.5|AC007653 Homo sapiens chromosome , clone RP11-51A1, complete sequence
          Length = 159926

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     ttcattcaaagcttcatcat 26
             ||||||||||||||||||||
Sbjct: 19855 ttcattcaaagcttcatcat 19874
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>emb|AL928976.4| Zebrafish DNA sequence from clone CH211-134B16, complete sequence
          Length = 173937

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    tcatagcatagcatagcata 42
             ||||||||||||||||||||
Sbjct: 77330 tcatagcatagcatagcata 77311
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>gb|AC145294.4| Mus musculus BAC clone RP23-88B16 from 7, complete sequence
          Length = 217265

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   ccagcgtaactgatagtctc 210
             ||||||||||||||||||||
Sbjct: 89435 ccagcgtaactgatagtctc 89454
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>emb|BX469895.7| Zebrafish DNA sequence from clone DKEY-152C18 in linkage group 19,
              complete sequence
          Length = 179493

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 24     catagcatagcatagcatac 43
              ||||||||||||||||||||
Sbjct: 175063 catagcatagcatagcatac 175082
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>gb|AC092939.8| Homo sapiens 3 BAC RP11-791G22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167152

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      ttcattcaaagcttcatcat 26
              ||||||||||||||||||||
Sbjct: 148650 ttcattcaaagcttcatcat 148669
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>emb|CR628386.8| Zebrafish DNA sequence from clone CH211-241O7 in linkage group 10,
              complete sequence
          Length = 148044

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    tcaacccagccagccaacca 267
              ||||||||||||||||||||
Sbjct: 140787 tcaacccagccagccaacca 140768
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>dbj|AP001001.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-677I18, complete
             sequence
          Length = 182429

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 21    catcatagcatagcatagcatacc 44
             ||||||||||||||||||| ||||
Sbjct: 53484 catcatagcatagcatagcctacc 53461
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>dbj|AP000813.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-822P4, complete
              sequence
          Length = 210816

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     catcatagcatagcatagcatacc 44
              ||||||||||||||||||| ||||
Sbjct: 151230 catcatagcatagcatagcctacc 151207
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>emb|BX537665.1|HSM806557 Homo sapiens mRNA; cDNA DKFZp686B1090 (from clone DKFZp686B1090)
          Length = 5162

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 21   catcatagcatagcatagcatacc 44
            ||||||||||||||||||| ||||
Sbjct: 1444 catcatagcatagcatagcctacc 1421
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>gb|AC149596.2| Mus musculus BAC clone RP24-424J20 from 7, complete sequence
          Length = 187362

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 191    ccagcgtaactgatagtctc 210
              ||||||||||||||||||||
Sbjct: 130306 ccagcgtaactgatagtctc 130287
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>gb|AC122892.4| Mus musculus BAC clone RP23-66P19 from 8, complete sequence
          Length = 216389

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    catagcatagcatagcataccacc 47
             |||||||||||||||||| |||||
Sbjct: 56052 catagcatagcatagcattccacc 56075


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,534,166
Number of Sequences: 3902068
Number of extensions: 3534166
Number of successful extensions: 95629
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95135
Number of HSP's gapped (non-prelim): 447
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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