ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYO1_SCHPO (Q9Y7Z8) Myosin-1 33 0.31
2MRC2_HUMAN (Q9UBG0) Macrophage mannose receptor 2 precursor (Uro... 30 2.7
3ARHGB_RAT (Q9ES67) Rho guanine nucleotide exchange factor 11 (Rh... 30 2.7
4NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor (Na(+)/Ca... 30 3.5
5NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor (Na(+)/... 30 4.5
6Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989 29 7.7

>MYO1_SCHPO (Q9Y7Z8) Myosin-1|
          Length = 1217

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 26/77 (33%), Positives = 35/77 (45%)
 Frame = +3

Query: 246  RTA*TKPKSNPSATLLPAHVLASVCTGERTAARAPVTAMYSTTCHFFPFASLHALPNAAA 425
            + A TKP S P+A   PA +   V T ++T  R P  AM              A PN   
Sbjct: 993  KPAATKPVSMPAAKSKPAPMANPVSTAQQTQNRPPAPAM-------------QARPNTTQ 1039

Query: 426  PWQPGSATATTTLKEQT 476
               P ++T TTT+K+ T
Sbjct: 1040 AAAPVTST-TTTIKQAT 1055



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>MRC2_HUMAN (Q9UBG0) Macrophage mannose receptor 2 precursor (Urokinase|
            receptor-associated protein) (Endocytic receptor 180)
            (CD280 antigen)
          Length = 1479

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 250  VLMALLQLFALCAMTAFYYERRENMD-GQLGATRYAKLSSEESNA 119
            VLMA+L L AL       Y RR++++ G     RY++ SS  + A
Sbjct: 1418 VLMAVLLLLALLTAALILYRRRQSIERGAFEGARYSRSSSSPTEA 1462



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>ARHGB_RAT (Q9ES67) Rho guanine nucleotide exchange factor 11 (RhoGEF glutamate|
            transport modulator GTRAP48)
          Length = 1527

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = +3

Query: 285  TLLPAHVLASVCTGERTAARAPVTAMYSTTCHFFPFASLHALPNAAAPWQPGSATATTTL 464
            +LLP H + +   GE      P  ++ S T H               PW PGS     T+
Sbjct: 1221 SLLPGHTVKTQAAGEPEDDLTPTPSVVSITSH---------------PWDPGSPGQAPTI 1265

Query: 465  KEQTK 479
             + T+
Sbjct: 1266 SDSTR 1270



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>NAC3_RAT (P70549) Sodium/calcium exchanger 3 precursor|
           (Na(+)/Ca(2+)-exchange protein 3)
          Length = 927

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 253 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 134
           A  + L  +FA   ++   Y RR ++ G+LG  R  KL++
Sbjct: 862 AFSVTLFTIFAFVCLSVLLYRRRPHLGGELGGPRGCKLAT 901



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>NAC3_HUMAN (P57103) Sodium/calcium exchanger 3 precursor|
           (Na(+)/Ca(2+)-exchange protein 3)
          Length = 927

 Score = 29.6 bits (65), Expect = 4.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 253 AVLMALLQLFALCAMTAFYYERRENMDGQLGATRYAKLSS 134
           A  + L  +FA   ++   Y RR ++ G+LG  R  KL++
Sbjct: 862 AFSVTLFTIFAFVCISVLLYRRRPHLGGELGGPRGCKLAT 901



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>Y2989_METCA (Q602S2) UPF0078 membrane protein MCA2989|
          Length = 198

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 346 ALAAVLSPVHTLARTCAGNSVALGLLLGFVYAV-LMALLQLFALCAMTAF 200
           A    L PV    +   G + ALG+LLGF + V LMALL    + A+  F
Sbjct: 89  AFVGHLYPVFFQFKGGKGVATALGVLLGFAWPVGLMALLTWIGVAALFRF 138


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,126,528
Number of Sequences: 219361
Number of extensions: 1110170
Number of successful extensions: 3395
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3394
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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