ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
2dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic D... 64 5e-07
3gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 46 0.11
4gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.42
5emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 i... 44 0.42
6emb|BX324123.4| Zebrafish DNA sequence from clone DKEY-106L3 in ... 44 0.42
7gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 44 0.42
8gb|AC092145.2| Homo sapiens chromosome 16 clone RP11-61F12, comp... 44 0.42
9gb|AC129582.10| Mus musculus chromosome 5, clone RP24-485O24, co... 42 1.7
10gb|AC044864.6| Mus musculus chromosome 3, clone RP23-168E14, com... 42 1.7
11gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, com... 42 1.7
12gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, com... 42 1.7
13gb|AC118020.11| Mus musculus, clone RP23-459B19, complete sequence 42 1.7
14gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
15emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.7
16emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 42 1.7
17emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 42 1.7
18emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete ... 42 1.7
19gb|AC079955.9| Homo sapiens chromosome 10 clone RP11-134O16, com... 42 1.7
20dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
21gb|AC020612.40| Homo sapiens 12 BAC RP11-133N21 (Roswell Park Ca... 42 1.7
22gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
23ref|NM_187969.1| Oryza sativa (japonica cultivar-group), Ozsa838... 40 6.6
24gb|AC164176.12| Mus musculus 10 BAC RP23-8O18 (Roswell Park Canc... 40 6.6
25gb|AC164557.3| Mus musculus BAC clone RP23-282G1 from chromosome... 40 6.6
26ref|XM_364525.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 6.6
27gb|AC123731.9| Mus musculus chromosome 15, clone RP23-458N23, co... 40 6.6
28gb|AC126408.6| Mus musculus chromosome 13, clone RP23-216P14, co... 40 6.6
29gb|AC133205.3| Mus musculus BAC clone RP23-108P11 from chromosom... 40 6.6
30gb|AC124484.5| Mus musculus BAC clone RP24-128N20 from chromosom... 40 6.6
31gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome... 40 6.6
32gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosom... 40 6.6
33gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosom... 40 6.6
34emb|CR774182.6| Zebrafish DNA sequence from clone DKEY-3L1 in li... 40 6.6
35gb|AC124544.4| Mus musculus BAC clone RP23-266K17 from 8, comple... 40 6.6
36gb|BC056996.1| Mus musculus polymerase (DNA directed), mu, mRNA ... 40 6.6
37emb|AL356285.9| Human DNA sequence from clone RP11-569O4 on chro... 40 6.6
38emb|AL136102.10| Human DNA sequence from clone RP3-453O12 on chr... 40 6.6
39gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome... 40 6.6
40gb|AC164625.6| Mus musculus 10 BAC RP24-366E11 (Roswell Park Can... 40 6.6
41emb|AL627069.10| Mouse DNA sequence from clone RP23-385C16 on ch... 40 6.6
42emb|AJ312903.1|MMU312903 Mus musculus DNAPOLmu gene for murine D... 40 6.6
43emb|CR387989.9| Zebrafish DNA sequence from clone DKEY-101P2 in ... 40 6.6
44emb|AL606506.11| Mouse DNA sequence from clone RP23-11A24 on chr... 40 6.6
45emb|AL596324.7| Mouse DNA sequence from clone RP23-324M14 on chr... 40 6.6
46emb|BX649211.10| Zebrafish DNA sequence from clone DKEY-215O18 i... 40 6.6
47gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 1... 40 6.6
48emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 ... 40 6.6
49gb|AC013564.7| Homo sapiens chromosome 15, clone RP11-321F6, com... 40 6.6
50gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 6.6
51dbj|AK137747.1| Mus musculus 6 days neonate skin cDNA, RIKEN ful... 40 6.6
52gb|AC090461.4| Homo sapiens chromosome 15, clone RP11-100A11, co... 40 6.6
53emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in... 40 6.6
54gb|AC157278.2| Mus musculus BAC clone RP23-153L22 from chromosom... 40 6.6
55dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
56dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
57dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
58gb|AC122764.12| Mus musculus chromosome 15, clone RP24-93B16, co... 40 6.6
59gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, com... 40 6.6
60dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.6
61gb|AC153493.6| Mus musculus 10 BAC RP23-23J2 (Roswell Park Cance... 40 6.6
62dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
63gb|AC154283.1| Mus musculus BAC clone RP24-279H4 from chromosome... 40 6.6
64dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
65dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
66gb|AC102224.21| Mus musculus chromosome 3, clone RP24-372D1, com... 40 6.6
67emb|BX664748.8| Zebrafish DNA sequence from clone DKEY-3N7 in li... 40 6.6
68emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in ... 40 6.6
69emb|BX649502.4| Zebrafish DNA sequence from clone DKEY-204F11 in... 40 6.6
70emb|CT571277.10| Mouse DNA sequence from clone RP24-327L5 on chr... 40 6.6
71gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.55... 40 6.6
72gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
73emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057... 40 6.6
74emb|CT010588.10| Mouse DNA sequence from clone RP23-150H18 on ch... 40 6.6
75gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosom... 40 6.6
76gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, comple... 40 6.6
77gb|AC133195.4| Mus musculus BAC clone RP23-133F6 from 8, complet... 40 6.6
78gb|AC122861.4| Mus musculus BAC clone RP23-140G16 from 19, compl... 40 6.6
79gb|AC115744.9| Mus musculus chromosome 12, clone RP23-479M19, co... 40 6.6
80emb|AL596384.17| Mouse DNA sequence from clone RP23-353J21 on ch... 40 6.6
81emb|AL732525.13| Mouse DNA sequence from clone RP23-358I10 on ch... 40 6.6
82gb|AC145556.4| Mus musculus BAC clone RP23-308E7 from chromosome... 40 6.6 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 89/108 (82%)
 Strand = Plus / Plus

                                                                           
Query: 380     cttcttccccttcgccagcctacacgccctgcctaacgcggctgcgccgtggcagccggg 439
               ||||||| ||||| ||||||| |||||||  || |||||| | || |||||||| | |||
Sbjct: 2245021 cttcttctccttcaccagcctccacgcccgcccgaacgcgccggctccgtggcaccaggg 2245080

                                                               
Query: 440     ctcggccaccgccacgacgacgctcaaagagcagacgaagcagaagta 487
               ||| ||||| | |||||||||||| || ||||||| || | |||||||
Sbjct: 2245081 ctcagccacggacacgacgacgctgaaggagcagaggacggagaagta 2245128
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>dbj|AP005585.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0448B11
          Length = 179858

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 89/108 (82%)
 Strand = Plus / Plus

                                                                          
Query: 380    cttcttccccttcgccagcctacacgccctgcctaacgcggctgcgccgtggcagccggg 439
              ||||||| ||||| ||||||| |||||||  || |||||| | || |||||||| | |||
Sbjct: 106859 cttcttctccttcaccagcctccacgcccgcccgaacgcgccggctccgtggcaccaggg 106918

                                                              
Query: 440    ctcggccaccgccacgacgacgctcaaagagcagacgaagcagaagta 487
              ||| ||||| | |||||||||||| || ||||||| || | |||||||
Sbjct: 106919 ctcagccacggacacgacgacgctgaaggagcagaggacggagaagta 106966
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 417     gcggctgcgccgtggcagccggg 439
               |||||||||||||||||||||||
Sbjct: 5093531 gcggctgcgccgtggcagccggg 5093509
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 430    ggcagccgggctcggccaccgc 451
              ||||||||||||||||||||||
Sbjct: 342076 ggcagccgggctcggccaccgc 342055



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 332    gacggcggccagggcgccgg 351
              ||||||||||||||||||||
Sbjct: 129891 gacggcggccagggcgccgg 129910
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>emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 in linkage group 10,
             complete sequence
          Length = 165086

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 19    gtactgtgtttaaaaaataaca 40
             ||||||||||||||||||||||
Sbjct: 12909 gtactgtgtttaaaaaataaca 12888
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>emb|BX324123.4| Zebrafish DNA sequence from clone DKEY-106L3 in linkage group 10,
             complete sequence
          Length = 158061

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 174   tccatgttctccctgcgctcgt 195
             ||||||||||||||||||||||
Sbjct: 72623 tccatgttctccctgcgctcgt 72602
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 323     cggcgaaaggacggcggccagggcgc 348
               |||||||||| |||||||||||||||
Sbjct: 2594705 cggcgaaagggcggcggccagggcgc 2594680
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>gb|AC092145.2| Homo sapiens chromosome 16 clone RP11-61F12, complete sequence
          Length = 113176

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 27    tttaaaaaataacaatatggcc 48
             ||||||||||||||||||||||
Sbjct: 52854 tttaaaaaataacaatatggcc 52833
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>gb|AC129582.10| Mus musculus chromosome 5, clone RP24-485O24, complete sequence
          Length = 184794

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 44     tggcctggcctacaaagcaag 64
              |||||||||||||||||||||
Sbjct: 102136 tggcctggcctacaaagcaag 102156
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>gb|AC044864.6| Mus musculus chromosome 3, clone RP23-168E14, complete sequence
          Length = 224119

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 45     ggcctggcctacaaagcaagt 65
              |||||||||||||||||||||
Sbjct: 202083 ggcctggcctacaaagcaagt 202063
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>gb|AC102388.7| Mus musculus chromosome 3, clone RP24-298F19, complete sequence
          Length = 166620

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 45     ggcctggcctacaaagcaagt 65
              |||||||||||||||||||||
Sbjct: 145984 ggcctggcctacaaagcaagt 146004
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>gb|AC116392.12| Mus musculus chromosome 10, clone RP23-93D3, complete sequence
          Length = 275200

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    ctgtgtttaaaaaataacaat 42
             |||||||||||||||||||||
Sbjct: 63838 ctgtgtttaaaaaataacaat 63858
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>gb|AC118020.11| Mus musculus, clone RP23-459B19, complete sequence
          Length = 191669

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    ctgtgtttaaaaaataacaat 42
             |||||||||||||||||||||
Sbjct: 31829 ctgtgtttaaaaaataacaat 31809
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>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    gcttgtactgtgtttaaaaaa 35
             |||||||||||||||||||||
Sbjct: 70583 gcttgtactgtgtttaaaaaa 70603
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 330    aggacggcggccagggcgccg 350
              |||||||||||||||||||||
Sbjct: 270044 aggacggcggccagggcgccg 270024
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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 330    aggacggcggccagggcgccg 350
              |||||||||||||||||||||
Sbjct: 286021 aggacggcggccagggcgccg 286001
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 330    aggacggcggccagggcgccg 350
              |||||||||||||||||||||
Sbjct: 197470 aggacggcggccagggcgccg 197490
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>emb|AL939111.1|SCO939111 Streptomyces coelicolor A3(2) complete genome; segment 8/29
          Length = 321250

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 331    ggacggcggccagggcgccgg 351
              |||||||||||||||||||||
Sbjct: 202078 ggacggcggccagggcgccgg 202098
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>gb|AC079955.9| Homo sapiens chromosome 10 clone RP11-134O16, complete sequence
          Length = 192042

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    tggcctggcctacaaagcaag 64
             |||||||||||||||||||||
Sbjct: 26888 tggcctggcctacaaagcaag 26868
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 15       gcttgtactgtgtttaaaaaa 35
                |||||||||||||||||||||
Sbjct: 24751905 gcttgtactgtgtttaaaaaa 24751885
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>gb|AC020612.40| Homo sapiens 12 BAC RP11-133N21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188928

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 69     aattacaggccaacaacagtc 89
              |||||||||||||||||||||
Sbjct: 110553 aattacaggccaacaacagtc 110533
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 15       gcttgtactgtgtttaaaaaa 35
                |||||||||||||||||||||
Sbjct: 25063575 gcttgtactgtgtttaaaaaa 25063555
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>ref|NM_187969.1| Oryza sativa (japonica cultivar-group), Ozsa8389 predicted mRNA
          Length = 1317

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 376 gccacttcttccccttcgcc 395
           ||||||||||||||||||||
Sbjct: 179 gccacttcttccccttcgcc 198
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>gb|AC164176.12| Mus musculus 10 BAC RP23-8O18 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 216064

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 88758 gcctggcctacaaagcaagt 88739
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>gb|AC164557.3| Mus musculus BAC clone RP23-282G1 from chromosome 8, complete sequence
          Length = 175078

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 147141 gcctggcctacaaagcaagt 147160
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>ref|XM_364525.1| Magnaporthe grisea 70-15 predicted protein (MG09401.4) partial mRNA
          Length = 591

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 332 gacggcggccagggcgccgg 351
           ||||||||||||||||||||
Sbjct: 375 gacggcggccagggcgccgg 356
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>gb|AC123731.9| Mus musculus chromosome 15, clone RP23-458N23, complete sequence
          Length = 178222

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 28     ttaaaaaataacaatatggcctgg 51
              ||||||||||| ||||||||||||
Sbjct: 170324 ttaaaaaataaaaatatggcctgg 170347
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>gb|AC126408.6| Mus musculus chromosome 13, clone RP23-216P14, complete sequence
          Length = 238967

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 98864 gcctggcctacaaagcaagt 98845
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>gb|AC133205.3| Mus musculus BAC clone RP23-108P11 from chromosome 13, complete
             sequence
          Length = 205640

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 22708 gcctggcctacaaagcaagt 22689
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>gb|AC124484.5| Mus musculus BAC clone RP24-128N20 from chromosome 12, complete
             sequence
          Length = 204507

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 76914 gcctggcctacaaagcaagt 76933
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>gb|AC132346.3| Mus musculus BAC clone RP24-179K8 from chromosome 3, complete sequence
          Length = 181261

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    ttgtactgtgtttaaaaaat 36
             ||||||||||||||||||||
Sbjct: 74922 ttgtactgtgtttaaaaaat 74941
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>gb|AC114824.5| Mus musculus BAC clone RP23-342J11 from chromosome 17, complete
             sequence
          Length = 216044

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 34707 gcctggcctacaaagcaagt 34726
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>gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosome 19, complete
             sequence
          Length = 189613

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 17690 gcctggcctacaaagcaagt 17709
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>emb|CR774182.6| Zebrafish DNA sequence from clone DKEY-3L1 in linkage group 1, complete
             sequence
          Length = 92063

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   catgttctccctgcgctcgt 195
             ||||||||||||||||||||
Sbjct: 17701 catgttctccctgcgctcgt 17720
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>gb|AC124544.4| Mus musculus BAC clone RP23-266K17 from 8, complete sequence
          Length = 150266

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 145189 gcctggcctacaaagcaagt 145208
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>gb|BC056996.1| Mus musculus polymerase (DNA directed), mu, mRNA (cDNA clone
            IMAGE:5709198), partial cds
          Length = 4590

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   gcctggcctacaaagcaagt 65
            ||||||||||||||||||||
Sbjct: 1311 gcctggcctacaaagcaagt 1330
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>emb|AL356285.9| Human DNA sequence from clone RP11-569O4 on chromosome 13 Contains the 5'
              end of the XPO4 gene for likely ortholog of mouse exportin
              4, a CCR4-NOT transcription complex, subunit 4 (CNOT4)
              (NOT4, NOT4H, CLONE243) pseudogene, a heterogeneous nuclear
              ribonucleoprotein A1 (HNRPA1)(HNRNPA1) pseudogene, a
              pseudogene similar to part of peptidylprolyl isomerase A
              (cyclophilin A) (PPIA), a Laminin receptor 1 (67kD,
              ribosomal protein SA)(LAMR1)(LRP, p40, RPSA, 37LRP, LAMBR)
              pseudogene, the 3' end of the LATS2 gene for LATS, large
              tumor suppressor, homolog 2 (LATS (large tumor suppressor,
              Drosophila) homolog 2), two novel genes and three CpG
              islands, complete sequence
          Length = 183597

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 157    tagcccccagctggccgtccatgt 180
              |||||||||||||||| |||||||
Sbjct: 146138 tagcccccagctggccatccatgt 146115
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>emb|AL136102.10| Human DNA sequence from clone RP3-453O12 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 78160

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   acctgccacttcttcccctt 391
             ||||||||||||||||||||
Sbjct: 53561 acctgccacttcttcccctt 53542
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>gb|AC157572.4| Mus musculus BAC clone RP23-79O10 from chromosome 14, complete sequence
          Length = 242759

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 57769 gcctggcctacaaagcaagt 57750
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>gb|AC164625.6| Mus musculus 10 BAC RP24-366E11 (Roswell Park Cancer Institute
            (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 171748

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   gcctggcctacaaagcaagt 65
            ||||||||||||||||||||
Sbjct: 8411 gcctggcctacaaagcaagt 8430
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>emb|AL627069.10| Mouse DNA sequence from clone RP23-385C16 on chromosome 11 Contains the
              Mrps24 gene for mitochondrial ribosomal protein S24, a
              novel gene, a ubiquitin-conjugating enzyme E2D (Ube2d)
              pseudogene, the Dbnl gene for drebrin-like, the Pgam2 gene
              for phosphoglycerate mutase 2, a pseudogene similar to part
              of H+ transporting mitochondrial F0 complex ATP synthase
              subunit F Atp5j, the Polm gene for polymerase (DNA
              directed) mu, the Aebp1 gene for AE binding protein 1, the
              Pold2 gene for polymerase (DNA directed) delta 2 regulatory
              subunit, novel gene (1600028I17Rik) and seven CpG islands,
              complete sequence
          Length = 195129

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 141750 gcctggcctacaaagcaagt 141731
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>emb|AJ312903.1|MMU312903 Mus musculus DNAPOLmu gene for murine DNA polymerase mu, exons 1-11
          Length = 11102

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   gcctggcctacaaagcaagt 65
            ||||||||||||||||||||
Sbjct: 2277 gcctggcctacaaagcaagt 2296
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>emb|CR387989.9| Zebrafish DNA sequence from clone DKEY-101P2 in linkage group 18,
             complete sequence
          Length = 96438

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   catgttctccctgcgctcgt 195
             ||||||||||||||||||||
Sbjct: 19969 catgttctccctgcgctcgt 19950
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>emb|AL606506.11| Mouse DNA sequence from clone RP23-11A24 on chromosome 11 Contains a
              novel pseudogene and two CpG islands, complete sequence
          Length = 213971

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 168401 gcctggcctacaaagcaagt 168382
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>emb|AL596324.7| Mouse DNA sequence from clone RP23-324M14 on chromosome 11, complete
             sequence
          Length = 204453

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 12729 gcctggcctacaaagcaagt 12710
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>emb|BX649211.10| Zebrafish DNA sequence from clone DKEY-215O18 in linkage group 3,
             complete sequence
          Length = 125992

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   catgttctccctgcgctcgt 195
             ||||||||||||||||||||
Sbjct: 75900 catgttctccctgcgctcgt 75919
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>gb|AC159323.3| Mus musculus BAC clone RP23-6I8 from chromosome 14, complete sequence
          Length = 223640

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 80138 gcctggcctacaaagcaagt 80157
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>emb|BX510999.11| Zebrafish DNA sequence from clone CH211-157P22 in linkage group 5,
              complete sequence
          Length = 160405

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    catgttctccctgcgctcgt 195
              ||||||||||||||||||||
Sbjct: 142554 catgttctccctgcgctcgt 142573
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>gb|AC013564.7| Homo sapiens chromosome 15, clone RP11-321F6, complete sequence
          Length = 210133

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    gtgtttaaaaaataacaata 43
             ||||||||||||||||||||
Sbjct: 18333 gtgtttaaaaaataacaata 18314
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 436     cgggctcggccaccgccacg 455
               ||||||||||||||||||||
Sbjct: 3335726 cgggctcggccaccgccacg 3335745
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>dbj|AK137747.1| Mus musculus 6 days neonate skin cDNA, RIKEN full-length enriched
            library, clone:A030008F06 product:polymerase (DNA
            directed), mu, full insert sequence
          Length = 2468

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 46   gcctggcctacaaagcaagt 65
            ||||||||||||||||||||
Sbjct: 1123 gcctggcctacaaagcaagt 1142
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>gb|AC090461.4| Homo sapiens chromosome 15, clone RP11-100A11, complete sequence
          Length = 167218

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gtgtttaaaaaataacaata 43
              ||||||||||||||||||||
Sbjct: 164809 gtgtttaaaaaataacaata 164790
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>emb|BX470199.6| Zebrafish DNA sequence from clone CH211-226M7 in linkage group 11,
            complete sequence
          Length = 197146

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 176  catgttctccctgcgctcgt 195
            ||||||||||||||||||||
Sbjct: 8369 catgttctccctgcgctcgt 8388
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>gb|AC157278.2| Mus musculus BAC clone RP23-153L22 from chromosome 12, complete sequence
          Length = 199381

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 153297 gcctggcctacaaagcaagt 153316
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      tttaaaaaataacaatatgg 46
               ||||||||||||||||||||
Sbjct: 3224616 tttaaaaaataacaatatgg 3224597
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 93      gtgacaactgacaagtagaa 112
               ||||||||||||||||||||
Sbjct: 5212666 gtgacaactgacaagtagaa 5212685
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 376     gccacttcttccccttcgcc 395
               ||||||||||||||||||||
Sbjct: 8854634 gccacttcttccccttcgcc 8854653
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>gb|AC122764.12| Mus musculus chromosome 15, clone RP24-93B16, complete sequence
          Length = 209493

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 28     ttaaaaaataacaatatggcctgg 51
              ||||||||||| ||||||||||||
Sbjct: 170991 ttaaaaaataaaaatatggcctgg 170968
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>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence
          Length = 216264

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     taaaaaataacaatatggcc 48
              ||||||||||||||||||||
Sbjct: 123228 taaaaaataacaatatggcc 123209
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 332     gacggcggccagggcgccgg 351
               ||||||||||||||||||||
Sbjct: 4075627 gacggcggccagggcgccgg 4075646
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>gb|AC153493.6| Mus musculus 10 BAC RP23-23J2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 220442

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 106101 gcctggcctacaaagcaagt 106120
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>dbj|AP001366.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0469E09
          Length = 146081

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   gccacttcttccccttcgcc 395
             ||||||||||||||||||||
Sbjct: 90662 gccacttcttccccttcgcc 90681
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>gb|AC154283.1| Mus musculus BAC clone RP24-279H4 from chromosome 14, complete sequence
          Length = 192706

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 76918 gcctggcctacaaagcaagt 76937
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>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1715_A07
          Length = 130907

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gtgacaactgacaagtagaa 112
             ||||||||||||||||||||
Sbjct: 79380 gtgacaactgacaagtagaa 79399
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>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0589E08
          Length = 138416

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gtgacaactgacaagtagaa 112
             ||||||||||||||||||||
Sbjct: 11429 gtgacaactgacaagtagaa 11448
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>gb|AC102224.21| Mus musculus chromosome 3, clone RP24-372D1, complete sequence
          Length = 196936

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 142634 gcctggcctacaaagcaagt 142615
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>emb|BX664748.8| Zebrafish DNA sequence from clone DKEY-3N7 in linkage group 4, complete
              sequence
          Length = 206047

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    catgttctccctgcgctcgt 195
              ||||||||||||||||||||
Sbjct: 158700 catgttctccctgcgctcgt 158719
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>emb|CR388132.9| Zebrafish DNA sequence from clone DKEY-23A23 in linkage group 4, complete
              sequence
          Length = 206525

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 176    catgttctccctgcgctcgt 195
              ||||||||||||||||||||
Sbjct: 200766 catgttctccctgcgctcgt 200747
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>emb|BX649502.4| Zebrafish DNA sequence from clone DKEY-204F11 in linkage group 3,
              complete sequence
          Length = 247387

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    catgttctccctgcgctcgt 195
              ||||||||||||||||||||
Sbjct: 218483 catgttctccctgcgctcgt 218502
to top
>emb|CT571277.10| Mouse DNA sequence from clone RP24-327L5 on chromosome 14, complete
             sequence
          Length = 142749

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 60996 gcctggcctacaaagcaagt 61015
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>gb|AC006270.1|AC006270 Homo sapiens chromosome 17, clone hRPK.556_O_9, complete sequence
          Length = 179929

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tttaaaaaataacaatatgg 46
             ||||||||||||||||||||
Sbjct: 95519 tttaaaaaataacaatatgg 95500
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      tttaaaaaataacaatatgg 46
               ||||||||||||||||||||
Sbjct: 3224561 tttaaaaaataacaatatgg 3224542
to top
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 109081

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tttaaaaaataacaatatgg 46
             ||||||||||||||||||||
Sbjct: 15002 tttaaaaaataacaatatgg 14983
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>emb|CT010588.10| Mouse DNA sequence from clone RP23-150H18 on chromosome 12, complete
             sequence
          Length = 158004

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 63137 gcctggcctacaaagcaagt 63156
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>gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosome 19, complete sequence
          Length = 148454

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 133029 gcctggcctacaaagcaagt 133010
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>gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, complete sequence
          Length = 195652

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 92253 gcctggcctacaaagcaagt 92234
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>gb|AC133195.4| Mus musculus BAC clone RP23-133F6 from 8, complete sequence
          Length = 214318

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 87672 gcctggcctacaaagcaagt 87691
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>gb|AC122861.4| Mus musculus BAC clone RP23-140G16 from 19, complete sequence
          Length = 205150

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 25175 gcctggcctacaaagcaagt 25156
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>gb|AC115744.9| Mus musculus chromosome 12, clone RP23-479M19, complete sequence
          Length = 211776

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 121050 gcctggcctacaaagcaagt 121069
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>emb|AL596384.17| Mouse DNA sequence from clone RP23-353J21 on chromosome 11, complete
              sequence
          Length = 219695

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 189792 gcctggcctacaaagcaagt 189811
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>emb|AL732525.13| Mouse DNA sequence from clone RP23-358I10 on chromosome 2, complete
              sequence
          Length = 220495

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 46     gcctggcctacaaagcaagt 65
              ||||||||||||||||||||
Sbjct: 167516 gcctggcctacaaagcaagt 167535
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>gb|AC145556.4| Mus musculus BAC clone RP23-308E7 from chromosome 8, complete sequence
          Length = 178400

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    gcctggcctacaaagcaagt 65
             ||||||||||||||||||||
Sbjct: 76954 gcctggcctacaaagcaagt 76973


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,616,065
Number of Sequences: 3902068
Number of extensions: 3616065
Number of successful extensions: 94308
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93670
Number of HSP's gapped (non-prelim): 638
length of query: 488
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 466
effective length of database: 17,147,199,772
effective search space: 7990595093752
effective search space used: 7990595093752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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