>FIBA_RAT (P06399) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide|
           A]
          Length = 782

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -1

Query: 432 IWTRQDGGKGSDEDCGGDWRRDRVVEMTPEQNQIVDRPRC 313
           +WT   G      + GGD R  R+VE  P Q +  D P C
Sbjct: 17  VWTADTGTTSEFIEAGGDIRGPRIVERQPSQCKETDWPFC 56

>FIXI_BRAJA (Q59207) Nitrogen fixation protein fixI (E1-E2 type cation ATPase|
           fixI) (EC 3.6.3.-)
          Length = 730

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 23/63 (36%), Positives = 31/63 (49%)
 Frame = +1

Query: 259 APAPVSDQQRAAPVPGAHAPWPVDDLILLGRHLDHPIPAPVSAAILVAPFAAVLPRPDLH 438
           AP+  +     +P+  AH      DL+ LGR L     APV+AAI  A  A  L R +L 
Sbjct: 627 APSLAAAHVSMSPISAAHLSQATADLVFLGRPL-----APVAAAIDSARKALHLMRQNLW 681

Query: 439 LGV 447
           L +
Sbjct: 682 LAI 684

>IF2_DESDG (Q30WJ0) Translation initiation factor IF-2|
          Length = 984

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 438 VEIWTRQDGGKGSDEDCGGDWRRDRVVEMTPEQNQIVDRPR 316
           VE   +  GGK   ED GG+W R +  +  PE   +  +P+
Sbjct: 356 VEFGDKGAGGKKMREDVGGNWNRGKKGKRKPETKPVSTQPQ 396

>TRUB_PROAC (Q6A7P0) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 295

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 247 QDVHAPAPVSDQQRAA-PVPGAHAPWPVDDLILLGRHLDHPIPAPVSAAILVAPFAAVLP 423
           QD   P P++  + AA   P  H        I +GR L   +PA V+A I        L 
Sbjct: 219 QDAVTPTPMTMAEAAALSFPVVHVTADQAAAIRVGRRLSFTVPAEVTAIIAETGELLALY 278

Query: 424 RPD 432
           RPD
Sbjct: 279 RPD 281

>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein|
           5.1) (Ultrahigh sulfur keratin-associated protein 5.1)
          Length = 278

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 97  NCSLMGVSARSRPGCVNSC*LCSRSQPAFCN 5
           +CS  G  A S+ GC +SC  CS  +P  C+
Sbjct: 216 SCSSCGSCAGSKGGCGSSCSQCSCCKPCCCS 246

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
 Frame = +1

Query: 262 PAPVSDQQRAAPVPGAHA---PWPVDDLILLGRHLDHPIPAPVSAAILVAPFAA 414
           PAP +    AAP P A A   P P      L R   HP   P +A  +  P AA
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAA 303

>AMELY_BOVIN (Q99004) Amelogenin, Y isoform precursor (Class II amelogenin)|
          Length = 192

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +1

Query: 253 VHAPAPVSDQQRAAPVPGAHAPWPVDDLILLGRHLDHPIPAPVS---AAILVAPFAAVLP 423
           V A  PV  QQ   PVPG H+  P+          + P+PA  S     I   P   + P
Sbjct: 89  VPAQQPVVPQQPMMPVPGQHSMTPIQH-----HQPNLPLPAQQSFQPQPIQPQPHQPLQP 143

Query: 424 RPDLH 438
           +P +H
Sbjct: 144 QPPVH 148

>SLAP_BACTI (P35826) S-layer protein precursor (Surface layer protein)|
           (Fragment)
          Length = 393

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -2

Query: 116 MFNLKRE---LLSHGRICQEPTWLC*FVLIMFEIATSFL 9
           +FN KRE   +L H  + Q+  ++C F ++ F+ + SF+
Sbjct: 334 LFNFKRERFFILIHNLLVQQFLYMCIFQMVHFKFSDSFI 372

>VMDL2_HUMAN (Q8NFU0) Bestrophin-3 (Vitelliform macular dystrophy 2-like protein|
           2)
          Length = 473

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +1

Query: 190 VAEAMEVVRHLLHGATFQMQDVHAPAPVSDQQRAAPVPGAHAPWPVDDLILLGRHLDHPI 369
           VA A E +R    G+TF ++    P   S Q  A+P  G+  P P     LLGR L    
Sbjct: 364 VATAAESLRPSFLGSTFNLRMSDDPEQ-SLQVEASP--GSGRPAPAAQTPLLGRFLGVGA 420

Query: 370 PAPVSAAILVAPFAAV--LPRP 429
           P+P   AI +  F  V   PRP
Sbjct: 421 PSP---AISLRNFGRVRGTPRP 439


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,007,665
Number of Sequences: 219361
Number of extensions: 1273053
Number of successful extensions: 4365
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4344
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)