ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart38b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete... 42 0.41
2gb|AC005790.1|AC005790 Homo sapiens chromosome 19, cosmid R34169... 42 0.41
3emb|BX004977.8| Mouse DNA sequence from clone RP23-278J5 on chro... 42 0.41
4emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4,... 40 1.6
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
6dbj|AP000056.1| Homo sapiens genomic DNA, chromosome 21q22.1, se... 40 1.6
7gb|AC128650.6| Homo sapiens 3 BAC RP11-373L8 (Roswell Park Cance... 40 1.6
8dbj|BS000192.1| Pan troglodytes chromosome 22 clone:PTB-125M11, ... 40 1.6
9dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 1.6
10dbj|AP000330.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 40 1.6
11dbj|AP000171.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2... 40 1.6
12gb|AC147479.17| Mus musculus chromosome 17, clone RP24-178C19, c... 38 6.4
13ref|NM_115562.3| Arabidopsis thaliana strictosidine synthase AT3... 38 6.4
14gb|AC151292.2| Mus musculus BAC clone RP23-138P14 from chromosom... 38 6.4
15gb|AC118632.7| Mus musculus chromosome 18, clone RP24-94D24, com... 38 6.4
16emb|AL713969.11| Human DNA sequence from clone RP11-501I17 on ch... 38 6.4
17gb|AC158228.3| Mus musculus chromosome 5, clone RP23-118K12, com... 38 6.4
18emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BA... 38 6.4
19gb|AC092711.14| Mus musculus chromosome 5, clone RP23-7D3, compl... 38 6.4
20gb|AC091113.7| Homo sapiens chromosome 17, clone RP11-410N7, com... 38 6.4
21gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, compl... 38 6.4
22gb|AC010767.7| Homo sapiens chromosome 17, clone RP11-188K10, co... 38 6.4
23gb|BT023417.1| Arabidopsis thaliana At3g57030 gene, complete cds 38 6.4
24emb|BX824873.1|CNS0A6YQ Arabidopsis thaliana Full-length cDNA Co... 38 6.4
25emb|BX824761.1|CNS0A4TH Arabidopsis thaliana Full-length cDNA Co... 38 6.4
26gb|AC013442.11| Homo sapiens BAC clone RP11-387M19 from 2, compl... 38 6.4
27gb|AC026956.20| Homo sapiens chromosome 15, clone RP11-597K23, c... 38 6.4
28gb|AC006389.2|AC006389 Homo sapiens BAC clone CTA-437B22 from 7q... 38 6.4
29emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chro... 38 6.4
30gb|AE001439.1| Helicobacter pylori J99, complete genome 38 6.4
31gb|AC130216.4| Mus musculus BAC clone RP23-218G9 from 10, comple... 38 6.4
32dbj|AP003468.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 6.4
33gb|AC134539.3| Mus musculus BAC clone RP24-400I3 from 10, comple... 38 6.4
34gb|AC002422.1|AC002422 Human Chromosome X, complete sequence 38 6.4
35emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chro... 38 6.4
36emb|AL669891.12| Mouse DNA sequence from clone RP23-271F3 on chr... 38 6.4
37emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chr... 38 6.4
38gb|AC171111.2| Mus musculus BAC clone RP24-131J20 from chromosom... 38 6.4
39dbj|AP003494.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 38 6.4 
>gb|AY177404.1| Secale cereale O-methyltransferase mRNA, complete cds
          Length = 1373

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 36   acataaataaaccacactgcaagggtact 64
            ||||||||||| ||||||| |||||||||
Sbjct: 1204 acataaataaagcacactgaaagggtact 1176
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>gb|AC005790.1|AC005790 Homo sapiens chromosome 19, cosmid R34169, complete sequence
          Length = 39239

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 39    taaataaaccacactgcaagg 59
             |||||||||||||||||||||
Sbjct: 28874 taaataaaccacactgcaagg 28894
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>emb|BX004977.8| Mouse DNA sequence from clone RP23-278J5 on chromosome X, complete
             sequence
          Length = 132581

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 10    ggactctttttattcattcta 30
             |||||||||||||||||||||
Sbjct: 19168 ggactctttttattcattcta 19148
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>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
              complete sequence
          Length = 153623

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     aagcacacataaataaacca 49
              ||||||||||||||||||||
Sbjct: 126458 aagcacacataaataaacca 126477
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 30       aagcacacataaataaacca 49
                ||||||||||||||||||||
Sbjct: 33776015 aagcacacataaataaacca 33776034
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>dbj|AP000056.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 27/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ttcattctaagcacacataa 41
             ||||||||||||||||||||
Sbjct: 31572 ttcattctaagcacacataa 31591
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>gb|AC128650.6| Homo sapiens 3 BAC RP11-373L8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 119990

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     gggactctttttattcattc 28
             ||||||||||||||||||||
Sbjct: 27919 gggactctttttattcattc 27938
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>dbj|BS000192.1| Pan troglodytes chromosome 22 clone:PTB-125M11, map 22, complete
             sequences
          Length = 189269

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ttcattctaagcacacataa 41
             ||||||||||||||||||||
Sbjct: 54679 ttcattctaagcacacataa 54698
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>dbj|AP001720.1| Homo sapiens genomic DNA, chromosome 21q, section 64/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ttcattctaagcacacataa 41
              ||||||||||||||||||||
Sbjct: 312443 ttcattctaagcacacataa 312462
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>dbj|AP000330.3| Homo sapiens genomic DNA, chromosome 21 clone:RP1-140K16, complete
             sequence
          Length = 170368

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ttcattctaagcacacataa 41
             ||||||||||||||||||||
Sbjct: 58032 ttcattctaagcacacataa 58051
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>dbj|AP000171.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             B2344F14-f50E8, segment 7/9, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ttcattctaagcacacataa 41
             ||||||||||||||||||||
Sbjct: 22202 ttcattctaagcacacataa 22221
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>gb|AC147479.17| Mus musculus chromosome 17, clone RP24-178C19, complete sequence
          Length = 178820

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 73    aaagcattcccttcatgga 91
             |||||||||||||||||||
Sbjct: 65229 aaagcattcccttcatgga 65247
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>ref|NM_115562.3| Arabidopsis thaliana strictosidine synthase AT3G57030 mRNA, complete
            cds
          Length = 1410

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 117  cacttcacttataaacctc 135
            |||||||||||||||||||
Sbjct: 1145 cacttcacttataaacctc 1127
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>gb|AC151292.2| Mus musculus BAC clone RP23-138P14 from chromosome 17, complete sequence
          Length = 216585

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     aaagcattcccttcatgga 91
              |||||||||||||||||||
Sbjct: 168767 aaagcattcccttcatgga 168749
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>gb|AC118632.7| Mus musculus chromosome 18, clone RP24-94D24, complete sequence
          Length = 198636

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 29     taagcacacataaataaac 47
              |||||||||||||||||||
Sbjct: 133089 taagcacacataaataaac 133107
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>emb|AL713969.11| Human DNA sequence from clone RP11-501I17 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 84574

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    gactctttttattcattct 29
             |||||||||||||||||||
Sbjct: 80182 gactctttttattcattct 80164
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>gb|AC158228.3| Mus musculus chromosome 5, clone RP23-118K12, complete sequence
          Length = 208055

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    agcataaagcattcccttc 86
             |||||||||||||||||||
Sbjct: 59182 agcataaagcattcccttc 59200
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>emb|AL138655.1|ATF24I3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24I3
          Length = 91303

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 117   cacttcacttataaacctc 135
             |||||||||||||||||||
Sbjct: 29732 cacttcacttataaacctc 29750
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>gb|AC092711.14| Mus musculus chromosome 5, clone RP23-7D3, complete sequence
          Length = 191727

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 68     agcataaagcattcccttc 86
              |||||||||||||||||||
Sbjct: 163213 agcataaagcattcccttc 163195
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>gb|AC091113.7| Homo sapiens chromosome 17, clone RP11-410N7, complete sequence
          Length = 129396

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    tctttttattcattctaag 32
             |||||||||||||||||||
Sbjct: 95308 tctttttattcattctaag 95326
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>gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, complete sequence
          Length = 138073

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 109   ctgtgaaacacttcactta 127
             |||||||||||||||||||
Sbjct: 51098 ctgtgaaacacttcactta 51116
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>gb|AC010767.7| Homo sapiens chromosome 17, clone RP11-188K10, complete sequence
          Length = 184952

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    tctttttattcattctaag 32
             |||||||||||||||||||
Sbjct: 12122 tctttttattcattctaag 12140
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>gb|BT023417.1| Arabidopsis thaliana At3g57030 gene, complete cds
          Length = 1269

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 117  cacttcacttataaacctc 135
            |||||||||||||||||||
Sbjct: 1085 cacttcacttataaacctc 1067
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>emb|BX824873.1|CNS0A6YQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH79ZG12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1328

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 117  cacttcacttataaacctc 135
            |||||||||||||||||||
Sbjct: 1100 cacttcacttataaacctc 1082
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>emb|BX824761.1|CNS0A4TH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH70ZA05 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1320

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 117  cacttcacttataaacctc 135
            |||||||||||||||||||
Sbjct: 1100 cacttcacttataaacctc 1082
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>gb|AC013442.11| Homo sapiens BAC clone RP11-387M19 from 2, complete sequence
          Length = 115484

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    ctaagcacacataaataaa 46
             |||||||||||||||||||
Sbjct: 75829 ctaagcacacataaataaa 75811
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>gb|AC026956.20| Homo sapiens chromosome 15, clone RP11-597K23, complete sequence
          Length = 215520

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 7     aagggactctttttattca 25
             |||||||||||||||||||
Sbjct: 96792 aagggactctttttattca 96774
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>gb|AC006389.2|AC006389 Homo sapiens BAC clone CTA-437B22 from 7q31.1-q31.3, complete sequence
          Length = 107885

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    tttttattcattctaagca 34
             |||||||||||||||||||
Sbjct: 50377 tttttattcattctaagca 50359
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>emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chromosome 2, complete
              sequence
          Length = 170478

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 72     taaagcattcccttcatgg 90
              |||||||||||||||||||
Sbjct: 135184 taaagcattcccttcatgg 135166
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 10      ggactctttttattcattc 28
               |||||||||||||||||||
Sbjct: 1309740 ggactctttttattcattc 1309722
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>gb|AC130216.4| Mus musculus BAC clone RP23-218G9 from 10, complete sequence
          Length = 182204

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     tacttaaagcataaagcat 79
              |||||||||||||||||||
Sbjct: 117180 tacttaaagcataaagcat 117162
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>dbj|AP003468.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1205B2, complete
             sequence
          Length = 177515

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 114   aaacacttcacttataaac 132
             |||||||||||||||||||
Sbjct: 24511 aaacacttcacttataaac 24529
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>gb|AC134539.3| Mus musculus BAC clone RP24-400I3 from 10, complete sequence
          Length = 166054

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 61     tacttaaagcataaagcat 79
              |||||||||||||||||||
Sbjct: 164484 tacttaaagcataaagcat 164502
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>gb|AC002422.1|AC002422 Human Chromosome X, complete sequence
          Length = 160091

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 13     ctctttttattcattctaa 31
              |||||||||||||||||||
Sbjct: 150118 ctctttttattcattctaa 150100
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>emb|AL844149.4| Mouse DNA sequence from clone RP23-194D5 on chromosome 4, complete
              sequence
          Length = 199774

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 19     ttattcattctaagcacacataaataa 45
              ||||||||||||| || ||||||||||
Sbjct: 149806 ttattcattctaaacagacataaataa 149780
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>emb|AL669891.12| Mouse DNA sequence from clone RP23-271F3 on chromosome X, complete
             sequence
          Length = 221898

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    tttattcattctaagcaca 36
             |||||||||||||||||||
Sbjct: 20916 tttattcattctaagcaca 20898
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>emb|AL671911.12| Mouse DNA sequence from clone RP23-250F8 on chromosome X, complete
             sequence
          Length = 213401

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     gggactctttttattcatt 27
             |||||||||||||||||||
Sbjct: 63812 gggactctttttattcatt 63794
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>gb|AC171111.2| Mus musculus BAC clone RP24-131J20 from chromosome 17, complete sequence
          Length = 167872

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 73     aaagcattcccttcatgga 91
              |||||||||||||||||||
Sbjct: 161936 aaagcattcccttcatgga 161954
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>dbj|AP003494.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1700D9
          Length = 152142

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 114    aaacacttcacttataaac 132
              |||||||||||||||||||
Sbjct: 150478 aaacacttcacttataaac 150496


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,391,363
Number of Sequences: 3902068
Number of extensions: 1391363
Number of successful extensions: 104627
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104533
Number of HSP's gapped (non-prelim): 94
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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