ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart38a10 |
|---|---|
| Clone Library Name | barley_pub |
>CHI1_THECC (Q41596) Endochitinase 1 precursor (EC 3.2.1.14)| Length = 321 Score = 34.7 bits (78), Expect = 0.063 Identities = 14/19 (73%), Positives = 16/19 (84%) Frame = -3 Query: 295 YGNNLDCYNQLSFNIGLAV 239 YGNNLDCYNQ S+N G +V Sbjct: 300 YGNNLDCYNQRSYNNGPSV 318
>CHI1_GOSHI (Q39799) Endochitinase 1 precursor (EC 3.2.1.14)| Length = 324 Score = 33.1 bits (74), Expect = 0.18 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -3 Query: 295 YGNNLDCYNQLSFNIGLAV 239 YGNNLDCYNQ F G++V Sbjct: 303 YGNNLDCYNQSPFGNGVSV 321
>CHI2_GOSHI (Q39785) Endochitinase 2 precursor (EC 3.2.1.14) (Fragment)| Length = 302 Score = 33.1 bits (74), Expect = 0.18 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = -3 Query: 295 YGNNLDCYNQLSFNIGLAV 239 YGNNLDCYNQ F G++V Sbjct: 281 YGNNLDCYNQSPFGNGVSV 299
>CHIA_SECCE (Q9FRV1) Basic endochitinase A precursor (EC 3.2.1.14) (Rye seed| chitinase-a) (RSC-a) Length = 321 Score = 29.6 bits (65), Expect = 2.0 Identities = 11/13 (84%), Positives = 11/13 (84%) Frame = -3 Query: 295 YGNNLDCYNQLSF 257 YGNNLDCYNQ F Sbjct: 308 YGNNLDCYNQRPF 320
>CHI6_POPTR (P16579) Acidic endochitinase WIN6 precursor (EC 3.2.1.14)| Length = 340 Score = 29.3 bits (64), Expect = 2.7 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -3 Query: 295 YGNNLDCYNQLSFNIGLA 242 YG+NLDCY Q F GL+ Sbjct: 317 YGSNLDCYQQRPFGYGLS 334
>CHIB_VITVI (P51613) Basic endochitinase precursor (EC 3.2.1.14)| Length = 314 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/17 (70%), Positives = 12/17 (70%) Frame = -3 Query: 295 YGNNLDCYNQLSFNIGL 245 YGNNLDC NQ F GL Sbjct: 293 YGNNLDCNNQRPFGSGL 309
>NU5H_NYCOV (Q5DUY0) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 1849 Score = 29.3 bits (64), Expect = 2.7 Identities = 15/55 (27%), Positives = 29/55 (52%) Frame = +3 Query: 3 FCRRLCINENMFIIKGGDTSFPVRASTYMYYILHYRCLEGLDIHLFGHKILTKII 167 FC +L +NE + + G +T + S Y+L Y C+ L+++ + L+ I+ Sbjct: 46 FCEQLSLNEAIIVNLGINTLDQLLMSQAGRYLLLYYCIYALELYTVCYSTLSLIL 100
>CHIB_POPTR (P29031) Acidic endochitinase WIN6.2B precursor (EC 3.2.1.14)| Length = 303 Score = 28.9 bits (63), Expect = 3.5 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -3 Query: 295 YGNNLDCYNQLSFNIGL 245 YG+NLDCY Q F GL Sbjct: 280 YGSNLDCYQQRPFGYGL 296
>CHIT_PHAVU (P06215) Endochitinase precursor (EC 3.2.1.14)| Length = 328 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -3 Query: 295 YGNNLDCYNQLSFNIGL 245 YGNNLDCY+Q F L Sbjct: 303 YGNNLDCYSQTPFGNSL 319
>CHI5_PHAVU (P36361) Endochitinase CH5B precursor (EC 3.2.1.14)| Length = 327 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = -3 Query: 295 YGNNLDCYNQLSFNIGL 245 YGNNLDCY+Q F L Sbjct: 302 YGNNLDCYSQTPFGNSL 318
>REXO3_CANAL (Q5AL29) RNA exonuclease 3 (EC 3.1.-.-)| Length = 404 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -3 Query: 181 ITHK*IILVSIL*PNKWMSRPSRHL*WSI 95 + H+ II SIL PNKW + P+R WS+ Sbjct: 333 LIHENIIDTSILFPNKWKTGPTRR--WSL 359
>CHI3_TOBAC (P29059) Endochitinase 3 precursor (EC 3.2.1.14)| Length = 334 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = -3 Query: 292 GNNLDCYNQLSFNIGLAVQ 236 G+N+DC NQ SFN GL ++ Sbjct: 314 GDNIDCGNQKSFNSGLLLE 332
>AMY2_SALTY (P26613) Cytoplasmic alpha-amylase (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) Length = 494 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%) Frame = +3 Query: 12 RLCINENMFIIKGGDT-SFPVRASTYMYYILHYRCLEGLD 128 R I++N+ +G +FP RA Y +I Y C G+D Sbjct: 125 RTQIDDNIIECEGWTRYTFPARAGQYSNFIWDYHCFSGID 164
>CHIB_ARATH (P19171) Basic endochitinase B precursor (EC 3.2.1.14)| (Pathogenesis-related protein 3) (PR-3) (AtChiB) Length = 335 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = -3 Query: 292 GNNLDCYNQLSFNIGL 245 G NLDCYNQ SF GL Sbjct: 315 GGNLDCYNQRSFVNGL 330
>SY63_DISOM (P24507) Synaptotagmin C (Synaptic vesicle protein O-p65-C)| Length = 537 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/23 (43%), Positives = 12/23 (52%) Frame = +1 Query: 187 HPHTHMHKPRTQSYDLTAPRARC 255 HPH H+H + DLT R C Sbjct: 100 HPHQHLHHHHSHFTDLTVERVDC 122
>CHIC_SECCE (Q9FRV0) Basic endochitinase C precursor (EC 3.2.1.14) (Rye seed| chitinase-c) (RSC-c) Length = 266 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -3 Query: 295 YGNNLDCYNQLSF 257 YG+NLDCYNQ F Sbjct: 253 YGDNLDCYNQRPF 265
>CHI2_HORVU (P23951) 26 kDa endochitinase 2 precursor (EC 3.2.1.14) (CHI-26)| Length = 266 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -3 Query: 295 YGNNLDCYNQLSF 257 YGNNLDCY+Q F Sbjct: 253 YGNNLDCYSQRPF 265
>LACY_LACHE (Q7WTB2) Lactose permease (Lactose-proton symporter) (Lactose| transport protein) (Lactose transporter) [Includes: Putative phosphotransferase enzyme IIA component (EC 2.7.1.-) (Putative PTS system EIIA component)] Length = 638 Score = 27.7 bits (60), Expect = 7.8 Identities = 12/46 (26%), Positives = 22/46 (47%) Frame = -2 Query: 221 WVLGLCMCVCGCDDHPQINNLGKYFMTK*MDVQTFQTSVMEYIVHV 84 WV+G+ + GC +P L KY K + + V+ Y++ + Sbjct: 292 WVVGIIATIIGCCINPSFPVLNKYIPRKWLFIAGQTCMVLAYVLFI 337
>CHI1_HORVU (P11955) 26 kDa endochitinase 1 precursor (EC 3.2.1.14)| Length = 318 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -3 Query: 295 YGNNLDCYNQLSF 257 YGNNLDCY+Q F Sbjct: 305 YGNNLDCYSQRPF 317
>BSU1_ARATH (Q9LR78) Serine/threonine-protein phosphatase BSU1 (EC 3.1.3.16)| (Bri1 suppressor protein 1) Length = 793 Score = 27.7 bits (60), Expect = 7.8 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%) Frame = +2 Query: 80 DIHVLYTPL-QMSGRSGHPFIWS*NTYQDYLFVGDH 184 DIH Y L ++ GHP + T+ DYLF+GD+ Sbjct: 510 DIHGQYGDLMRLFHEYGHPSVEGDITHIDYLFLGDY 545 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,576,452 Number of Sequences: 219361 Number of extensions: 1027650 Number of successful extensions: 2168 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2167 length of database: 80,573,946 effective HSP length: 74 effective length of database: 64,341,232 effective search space used: 1544189568 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
