ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart37h12 |
|---|---|
| Clone Library Name | barley_pub |
>IF4G_SCHPO (Q10475) Eukaryotic translation initiation factor 4 gamma| (eIF-4-gamma) (eIF-4G) Length = 1403 Score = 32.7 bits (73), Expect = 0.25 Identities = 15/48 (31%), Positives = 27/48 (56%) Frame = +2 Query: 110 RKHTRSVKKTSSKRGRRAEESKGARKNQQNPGTPTEAPLSSAISTVHT 253 R+ VK+ + + +R E +G R+ +NP + APL+S+ + V T Sbjct: 683 REAEEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDT 730
>GNL3_RAT (Q811S9) Guanine nucleotide-binding protein-like 3 (Nucleolar| GTP-binding protein 3) (Nucleostemin) Length = 538 Score = 31.2 bits (69), Expect = 0.73 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +2 Query: 77 HKHYMEANTD*RKHTRSVKKTSSKRGRRAEESKGARKNQQNPGTPTEAPLSSAI 238 HK Y + R+H R ++K + KRG +K +++PG P AP A+ Sbjct: 16 HKRY-KIQKKVREHHRKLRKEAKKRGH--------KKPKKDPGVPNSAPFKEAL 60
>GNL3_MOUSE (Q8CI11) Guanine nucleotide-binding protein-like 3 (Nucleolar| GTP-binding protein 3) (Nucleostemin) Length = 538 Score = 31.2 bits (69), Expect = 0.73 Identities = 17/54 (31%), Positives = 27/54 (50%) Frame = +2 Query: 77 HKHYMEANTD*RKHTRSVKKTSSKRGRRAEESKGARKNQQNPGTPTEAPLSSAI 238 HK Y + R+H R ++K + KRG +K +++PG P AP A+ Sbjct: 16 HKRY-KIQKKVREHHRKLRKEAKKRGH--------KKPRKDPGVPNSAPFKEAL 60
>SNPH_HUMAN (O15079) Syntaphilin| Length = 538 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = +1 Query: 106 LTKTHSIGKKNKQQARAASRGKQRRAQKPAKSRDPNGGPSV 228 LT+THS+ + +R S G +RR P RD G S+ Sbjct: 38 LTRTHSLMAMSLPGSRRTSAGSRRRTSPPVSVRDAYGTSSL 78
>MYB1_MAIZE (P20024) Myb-related protein Zm1| Length = 340 Score = 29.3 bits (64), Expect = 2.8 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +2 Query: 122 RSVKKTSSKRGRRAEESKGARKNQQNPGTPTEAPLSSAISTVHT 253 ++V T K+ E K A + GTP APLSSA S+ T Sbjct: 107 KNVWNTHLKKKVAQREKKKAGAGSGDAGTPATAPLSSATSSTTT 150
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC| 3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2) Length = 1982 Score = 29.3 bits (64), Expect = 2.8 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%) Frame = +2 Query: 80 KHYMEANTD*RKHTRSVKKTS-SKRGRRAEESKGARKNQQ--NPGTPTEAPLSSAIS 241 K+ E ++D +H V+ S SKRGR+ +E K A K ++ + G P+ + SA S Sbjct: 76 KNESEEDSDFVQHDEEVEYPSTSKRGRKRKEEKQAAKEKESASSGMPSVEDVCSAFS 132
>SPAG4_HUMAN (Q9NPE6) Sperm-associated antigen 4 protein (Outer dense| fiber-associated protein SPAG4) Length = 437 Score = 28.5 bits (62), Expect = 4.7 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +2 Query: 110 RKHTRSVKKTSSKRGRRAEESKGARKNQQNPGTP 211 RKHT + +S +E+SKG R + PG P Sbjct: 14 RKHTPNFFSENSSMSITSEDSKGLRSAEPGPGEP 47
>MCR_SAISC (Q9N0W8) Mineralocorticoid receptor (MR)| Length = 982 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%) Frame = +2 Query: 167 ESKGARKNQ----QNPGTPTEAPLSSAISTVHTPP 259 E++G+R + N G+P +PLSS S++ +PP Sbjct: 241 ENRGSRSHSPAHASNVGSPLSSPLSSMKSSISSPP 275
>YQ93_CAEEL (Q10032) Hypothetical protein C27D6.3| Length = 118 Score = 28.1 bits (61), Expect = 6.2 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = +1 Query: 112 KTHSIGKKNKQQARAASRGKQRRAQKPAKSRDPN 213 +T GKKNK+ + A +GK ++ +K K N Sbjct: 38 ETKKKGKKNKKSKKKAKKGKTKKVRKADKYESQN 71
>MCR_HUMAN (P08235) Mineralocorticoid receptor (MR)| Length = 984 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%) Frame = +2 Query: 167 ESKGARKNQ----QNPGTPTEAPLSSAISTVHTPP 259 E++G+R + N G+P +PLSS S++ +PP Sbjct: 242 ENRGSRSHSPAHASNVGSPLSSPLSSMKSSISSPP 276
>MCR_AOTNA (Q3YC04) Mineralocorticoid receptor (MR)| Length = 984 Score = 28.1 bits (61), Expect = 6.2 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%) Frame = +2 Query: 167 ESKGARKNQ----QNPGTPTEAPLSSAISTVHTPP 259 E++G+R + N G+P +PLSS S++ +PP Sbjct: 242 ENRGSRSHSPAHASNVGSPLSSPLSSMKSSISSPP 276
>CAC1G_RAT (O54898) Voltage-dependent T-type calcium channel alpha-1G subunit| (Voltage-gated calcium channel alpha subunit Cav3.1) Length = 2254 Score = 27.7 bits (60), Expect = 8.1 Identities = 16/60 (26%), Positives = 25/60 (41%) Frame = +1 Query: 43 VHDMTVHHPHHS*TLHGSKH*LTKTHSIGKKNKQQARAASRGKQRRAQKPAKSRDPNGGP 222 VH + HH HH H H T + + + + + G +R P + P+GGP Sbjct: 491 VHHLVHHHHHH----HHHYHLGNGTLRVPRASPEIQDRDANGSRRLMLPPPSTPTPSGGP 546
>NMT2_HUMAN (O60551) Glycylpeptide N-tetradecanoyltransferase 2 (EC 2.3.1.97)| (Peptide N-myristoyltransferase 2) (Myristoyl-CoA:protein N-myristoyltransferase 2) (NMT 2) (Type II N-myristoyltransferase) Length = 498 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/41 (31%), Positives = 23/41 (56%) Frame = +3 Query: 132 KKQAASAGGEPRKAKARAKTSKIQGPQRRPLCPLPYLQFIR 254 KK+ ++GG + + ++ KIQ P + P P+ LQ I+ Sbjct: 55 KKEKPNSGGTKSDSASDSQEIKIQQPSKNPSVPMQKLQDIQ 95
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein| Length = 1723 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +2 Query: 128 VKKTSSKRGRRAEESKGARKNQQNPGTPTEAPLSSA 235 ++K SS GRR+ +G++K+ +PG E P S+A Sbjct: 1 MEKRSS--GRRSGRRRGSQKSTDSPGADAELPESAA 34 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,928,729 Number of Sequences: 219361 Number of extensions: 652550 Number of successful extensions: 2414 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2314 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2404 length of database: 80,573,946 effective HSP length: 62 effective length of database: 66,973,564 effective search space used: 1607365536 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
