ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin ... 398 e-108
2gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 42 0.85
3emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on ch... 42 0.85
4emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 i... 42 0.85
5emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 i... 42 0.85
6gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 0.85
7emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, comple... 40 3.4
8tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (... 40 3.4
9gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complet... 40 3.4
10gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosom... 40 3.4
11gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36... 40 3.4
12gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, r... 40 3.4
13gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65... 40 3.4

>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds
          Length = 1343

 Score =  398 bits (201), Expect = e-108
 Identities = 245/261 (93%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    tacacattgcatttcaaatttcccccc-aagttacctggatgcgtacatgacatgacagt 59
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1211 tacacattgcatttcaaatttcccccccaagttacctggatgcgtacatgacatgacagt 1152

                                                                        
Query: 60   acatcatcctcatcattcataaacattacatggaagcaaacactgactgacgaaaacaca 119
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1151 acatcatcctcatcattcataaacattacatggaagcaaacactgactgacgaagacaca 1092

                                                                        
Query: 120  ctcgatcggtnnnnnnnncaagcagcaagcgcgggcggcgagccgaggaaagcaaaggcg 179
            ||||||||||        ||||||||||||||||||||||||| |||||||||| || ||
Sbjct: 1091 ctcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcagaggaaagcagagacg 1032

                                                                        
Query: 180  cgcgcaaaaaccagcaaaatccagggaccccaacggaggcccctctgtcctctgccatat 239
            |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1031 cgcgcaaagaccagcagaatccagggacccgaacggaggcccctctgtcctctgccatat 972

                                 
Query: 240  ctacagttcatacgcctccga 260
            |||||||||||||||||||||
Sbjct: 971  ctacagttcatacgcctccga 951



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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 82     acattacatggaagcaaacac 102
              |||||||||||||||||||||
Sbjct: 152543 acattacatggaagcaaacac 152563



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>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21
             Contains the 3' end of the gene for a novel protein
             similar to sorting nexin 7 (SNX7), the TSCOT gene for
             thymic stromal co-transporter, a pseudogene similar to Mus
             musculus major urinary proteins and a CpG island, complete
             sequence
          Length = 141659

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 226   gtcctctgccatatctacagt 246
             |||||||||||||||||||||
Sbjct: 70594 gtcctctgccatatctacagt 70574



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>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7,
              complete sequence
          Length = 150136

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 55     acagtacatcatcctcatcat 75
              |||||||||||||||||||||
Sbjct: 125640 acagtacatcatcctcatcat 125660



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>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14,
              complete sequence
          Length = 157039

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 55     acagtacatcatcctcatcat 75
              |||||||||||||||||||||
Sbjct: 128445 acagtacatcatcctcatcat 128425



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 56      cagtacatcatcctcatcatt 76
               |||||||||||||||||||||
Sbjct: 3820278 cagtacatcatcctcatcatt 3820258



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>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence
          Length = 34107

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 57   agtacatcatcctcatcatt 76
            ||||||||||||||||||||
Sbjct: 2425 agtacatcatcctcatcatt 2406



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>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene,
            complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    cattgcatttcaaatttccc 24
            ||||||||||||||||||||
Sbjct: 1992 cattgcatttcaaatttccc 1973



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>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence
          Length = 151902

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    aaatttccccccaagttacc 35
             ||||||||||||||||||||
Sbjct: 77542 aaatttccccccaagttacc 77561



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>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
             sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     cacattgcatttcaaatttc 22
             ||||||||||||||||||||
Sbjct: 26652 cacattgcatttcaaatttc 26633



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>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
              BACR06C11, complete sequence
          Length = 174500

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      cattgcatttcaaatttccc 24
              ||||||||||||||||||||
Sbjct: 148936 cattgcatttcaaatttccc 148917



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>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones
             BACR01G10 and BACR05I08, complete sequence
          Length = 294942

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     cattgcatttcaaatttccc 24
             ||||||||||||||||||||
Sbjct: 16921 cattgcatttcaaatttccc 16902



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>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete
              sequence
          Length = 251192

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      cattgcatttcaaatttccc 24
              ||||||||||||||||||||
Sbjct: 179433 cattgcatttcaaatttccc 179414


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,158,816
Number of Sequences: 3902068
Number of extensions: 2158816
Number of successful extensions: 48081
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48055
Number of HSP's gapped (non-prelim): 25
length of query: 260
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 238
effective length of database: 17,147,199,772
effective search space: 4081033545736
effective search space used: 4081033545736
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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