Clone Name | rbart37h12 |
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Clone Library Name | barley_pub |
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 398 bits (201), Expect = e-108 Identities = 245/261 (93%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 1 tacacattgcatttcaaatttcccccc-aagttacctggatgcgtacatgacatgacagt 59 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1211 tacacattgcatttcaaatttcccccccaagttacctggatgcgtacatgacatgacagt 1152 Query: 60 acatcatcctcatcattcataaacattacatggaagcaaacactgactgacgaaaacaca 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1151 acatcatcctcatcattcataaacattacatggaagcaaacactgactgacgaagacaca 1092 Query: 120 ctcgatcggtnnnnnnnncaagcagcaagcgcgggcggcgagccgaggaaagcaaaggcg 179 |||||||||| ||||||||||||||||||||||||| |||||||||| || || Sbjct: 1091 ctcgatcggtagagaaaacaagcagcaagcgcgggcggcgagcagaggaaagcagagacg 1032 Query: 180 cgcgcaaaaaccagcaaaatccagggaccccaacggaggcccctctgtcctctgccatat 239 |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1031 cgcgcaaagaccagcagaatccagggacccgaacggaggcccctctgtcctctgccatat 972 Query: 240 ctacagttcatacgcctccga 260 ||||||||||||||||||||| Sbjct: 971 ctacagttcatacgcctccga 951
>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence Length = 218656 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 acattacatggaagcaaacac 102 ||||||||||||||||||||| Sbjct: 152543 acattacatggaagcaaacac 152563
>emb|AL139041.17| Human DNA sequence from clone RP11-408O19 on chromosome 9p11.2-21 Contains the 3' end of the gene for a novel protein similar to sorting nexin 7 (SNX7), the TSCOT gene for thymic stromal co-transporter, a pseudogene similar to Mus musculus major urinary proteins and a CpG island, complete sequence Length = 141659 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 226 gtcctctgccatatctacagt 246 ||||||||||||||||||||| Sbjct: 70594 gtcctctgccatatctacagt 70574
>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7, complete sequence Length = 150136 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Plus Query: 55 acagtacatcatcctcatcat 75 ||||||||||||||||||||| Sbjct: 125640 acagtacatcatcctcatcat 125660
>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14, complete sequence Length = 157039 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 55 acagtacatcatcctcatcat 75 ||||||||||||||||||||| Sbjct: 128445 acagtacatcatcctcatcat 128425
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 0.85 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 cagtacatcatcctcatcatt 76 ||||||||||||||||||||| Sbjct: 3820278 cagtacatcatcctcatcatt 3820258
>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence Length = 34107 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 agtacatcatcctcatcatt 76 |||||||||||||||||||| Sbjct: 2425 agtacatcatcctcatcatt 2406
>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene, complete cds Length = 2573 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cattgcatttcaaatttccc 24 |||||||||||||||||||| Sbjct: 1992 cattgcatttcaaatttccc 1973
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aaatttccccccaagttacc 35 |||||||||||||||||||| Sbjct: 77542 aaatttccccccaagttacc 77561
>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete sequence Length = 212960 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cacattgcatttcaaatttc 22 |||||||||||||||||||| Sbjct: 26652 cacattgcatttcaaatttc 26633
>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR06C11, complete sequence Length = 174500 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cattgcatttcaaatttccc 24 |||||||||||||||||||| Sbjct: 148936 cattgcatttcaaatttccc 148917
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10 and BACR05I08, complete sequence Length = 294942 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cattgcatttcaaatttccc 24 |||||||||||||||||||| Sbjct: 16921 cattgcatttcaaatttccc 16902
>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete sequence Length = 251192 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 cattgcatttcaaatttccc 24 |||||||||||||||||||| Sbjct: 179433 cattgcatttcaaatttccc 179414 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,158,816 Number of Sequences: 3902068 Number of extensions: 2158816 Number of successful extensions: 48081 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48055 Number of HSP's gapped (non-prelim): 25 length of query: 260 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 238 effective length of database: 17,147,199,772 effective search space: 4081033545736 effective search space used: 4081033545736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)