>HOMEZ_HUMAN (Q8IX15) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 525

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 205 DMTLFCI-YGMEGEKIQDNTTSRRTRAGTSWTS 300
           D+ L C+ YG++ EK++    ++R R G SW+S
Sbjct: 60  DIALLCLRYGLQMEKVKTWFMAQRLRCGISWSS 92

>XRN1_YEAST (P22147) 5'-3' exoribonuclease 1 (EC 3.1.11.-) (Strand exchange|
            protein 1) (KAR(-)-enhancing mutation protein) (5'-3'
            exoribonuclease) (DNA strand transfer protein beta)
            (STP-beta) (p175)
          Length = 1528

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 61   RERAHIILQFTRQSDNEQNPQSIQDTS 141
            +ERAH +L F ++  NE+N +S+ + S
Sbjct: 1281 KERAHDLLNFIKKDTNEKNSESVDNKS 1307

>RS16_COXBU (Q83E83) 30S ribosomal protein S16|
          Length = 137

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 14  GYMCPLNLGSDINLGVENEHTSYCSSPGSQTMSKIHNPYK 133
           GY  P+  G DI L +E E  S+  + G+QT  ++ +  K
Sbjct: 37  GYYNPMARGQDIRLQLEKERISHWLNQGAQTSLRVKHLIK 76

>MSU1_YEAST (P39112) Exoribonuclease II, mitochondrial precursor (EC 3.1.13.1)|
           (Ribonuclease II) (RNase II) (Mitochondrial biogenesis
           MSU1 protein)
          Length = 969

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +1

Query: 1   NQYSRLYVPTKFGL*HKFRSRERAHIILQFTRQSDNEQNPQSIQDTS 141
           + Y+  +  T  G   + +S+++A + L  TR+ DN+Q  +++ D S
Sbjct: 17  HSYTPCFRVTTRGKRQRSKSKQQAKVELDHTRELDNDQATETVVDRS 63

>HOMEZ_RAT (Q8K3E9) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 513

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 205 DMTLFCI-YGMEGEKIQDNTTSRRTRAGTSWTS 300
           D+ L C+ +G++ EK++    ++R R G SW+S
Sbjct: 60  DIALLCLRHGLQMEKVKTWFMAQRLRCGISWSS 92

>HOMEZ_MOUSE (Q80W88) Homeobox and leucine zipper protein Homez (Homeodomain|
           leucine zipper-containing factor)
          Length = 518

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 205 DMTLFCI-YGMEGEKIQDNTTSRRTRAGTSWTS 300
           D+ L C+ +G++ EK++    ++R R G SW+S
Sbjct: 60  DIALLCLRHGLQMEKVKTWFMAQRLRCGISWSS 92

>RGAP1_HUMAN (Q9H0H5) Rac GTPase-activating protein 1 (MgcRacGAP)|
          Length = 632

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 158 IRYRLLLVSCMDCGFCSLSDCRVNCNMMCARSLL 57
           I++  L + C DC   S  +CR  C + C  +L+
Sbjct: 307 IKFGKLSLKCRDCRVVSHPECRDRCPLPCIPTLI 340

>APH1_SCHPO (P49776) Bis(5'-nucleosyl)-tetraphosphatase [Asymmetrical] (EC|
           3.6.1.17) (Diadenosine 5',5'''-P1,P4-tetraphosphate
           asymmetrical hydrolase) (Diadenosine tetraphosphatase)
           (Ap4A hydrolase) (Ap4Aase)
          Length = 181

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +1

Query: 172 VHIHIITLQHVDMTLFCIYGMEGEKIQDNTTSRRTRAGTSWTSSHGTPHSLLRRWHHDDD 351
           VH+HII  +  D +   +   E EK + N  S        +      P S+ +    D+D
Sbjct: 95  VHVHIIPRKKADFSENDLVYSELEKNEGNLASLYLTGNERYAGDERPPTSMRQAIPKDED 154

Query: 352 RAP 360
           R P
Sbjct: 155 RKP 157

>RGAP1_MOUSE (Q9WVM1) Rac GTPase-activating protein 1 (MgcRacGAP)|
          Length = 628

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -3

Query: 158 IRYRLLLVSCMDCGFCSLSDCRVNCNMMCARSLLLNLCQSPNLVGT 21
           I++  L + C DC   S  +CR  C + C           P LVGT
Sbjct: 308 IKFGKLSLKCRDCRLVSHPECRDRCPLPCI----------PPLVGT 343


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,427,771
Number of Sequences: 219361
Number of extensions: 974402
Number of successful extensions: 2719
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2719
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)