ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYT14_HUMAN (Q8NB59) Synaptotagmin-14 (Synaptotagmin XIV) (SytXIV) 30 3.3
2UBPW_MOUSE (Q61068) Ubiquitin carboxyl-terminal hydrolase DUB-1 ... 30 3.3
3SYT14_MOUSE (Q7TN84) Synaptotagmin-14 (Synaptotagmin XIV) (SytXIV) 29 5.7
4JAM3_HUMAN (Q9BX67) Junctional adhesion molecule C precursor (JA... 29 5.7
5LEG9_RAT (P97840) Galectin-9 (36 kDa beta-galactoside-binding le... 29 7.5
6JAM3_RAT (Q68FQ2) Junctional adhesion molecule C precursor (JAM-... 28 9.7

>SYT14_HUMAN (Q8NB59) Synaptotagmin-14 (Synaptotagmin XIV) (SytXIV)|
          Length = 555

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 473 NTTACWRTISISMNSCSQEASRCRVRMARRMPKTWLVLIKSGTRGRL 333
           N + C   +S+S  SCS+  S C+      +P+  + L+ + T GRL
Sbjct: 386 NHSGCDSQMSVSEMSCSESTSSCQSLEHGSVPEILIGLLYNATTGRL 432



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>UBPW_MOUSE (Q61068) Ubiquitin carboxyl-terminal hydrolase DUB-1 (EC 3.1.2.15)|
           (Ubiquitin thioesterase DUB-1) (Ubiquitin-specific
           processing protease DUB-1) (Deubiquitinating enzyme 1)
          Length = 526

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
 Frame = +3

Query: 384 SSCHPNATAGCL---------LTAAVHGDAYCPPAGCRICAL 482
           +SC+ NA   CL         + +  H    C P GC++CA+
Sbjct: 58  NSCYLNAALQCLTHTPPLADYMLSQEHSQTCCSPEGCKLCAM 99



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>SYT14_MOUSE (Q7TN84) Synaptotagmin-14 (Synaptotagmin XIV) (SytXIV)|
          Length = 555

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 473 NTTACWRTISISMNSCSQEASRCRVRMARRMPKTWLVLIKSGTRGRL 333
           N + C   +S+S  SC    S C+      +P+  + L+ + T GRL
Sbjct: 386 NPSGCDSQVSLSEASCGDSTSSCQSLQHGSVPEILIGLLYNATTGRL 432



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>JAM3_HUMAN (Q9BX67) Junctional adhesion molecule C precursor (JAM-C)|
           (Junctional adhesion molecule 3) (JAM-3) (JAM-2)
          Length = 310

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +3

Query: 369 PRLRHSSCHPNATAGCLLTAAVH----GDAYC 452
           PR R+SS H N+  G L+  AVH    G  YC
Sbjct: 188 PRFRNSSFHLNSETGTLVFTAVHKDDSGQYYC 219



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>LEG9_RAT (P97840) Galectin-9 (36 kDa beta-galactoside-binding lectin) (Urate|
           transporter/channel) (UAT)
          Length = 354

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 462 LLEDNKHLHEQLQSGGIPLSRSDGKKNA*DVVSPHQVRNSWTPED 328
           +L D K  H  L+ GG      + + N   VV   Q+ NSW PE+
Sbjct: 246 VLPDAKRFHINLRCGGDIAFHLNPRFNEKVVVRNTQINNSWGPEE 290



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>JAM3_RAT (Q68FQ2) Junctional adhesion molecule C precursor (JAM-C)|
           (Junctional adhesion molecule 3) (JAM-3)
          Length = 310

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +3

Query: 369 PRLRHSSCHPNATAGCLLTAAVH----GDAYC 452
           PR ++SS H N+  G L+ +AVH    G  YC
Sbjct: 188 PRFQNSSFHVNSETGTLVFSAVHKEDSGQYYC 219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,722,888
Number of Sequences: 219361
Number of extensions: 1195301
Number of successful extensions: 2564
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2563
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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