ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37h02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
2dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic D... 74 5e-10
3dbj|AK063619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 5e-10
4gb|DQ168699.1| Dieuryneura stigma voucher CB0322 elongation fact... 46 0.11
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
6dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
7dbj|AK070852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
8gb|AC171105.1| Drosophila melanogaster clone CH223-40I08, comple... 40 6.5
9gb|AC113901.7| Rattus norvegicus 2 BAC CH230-328F5 (Children's H... 40 6.5
10gb|AC012085.4| Homo sapiens 12 BAC RP11-887P2 (Roswell Park Canc... 40 6.5
11emb|Z93019.1|HS49C23 Human DNA sequence from clone RP1-49C23 on ... 40 6.5
12emb|AL356964.12| Human DNA sequence from clone RP3-437L21 on chr... 40 6.5
13emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segmen... 40 6.5
14emb|AL031024.1|DMC196F3 Drosophila melanogaster cosmid clone 196F3 40 6.5
15emb|CR938745.1| Human DNA sequence from clone XX-HCC1954_32J13, ... 40 6.5
16emb|CR936885.1| Human DNA sequence from clone XX-HCC1954_35K12, ... 40 6.5
17emb|CR936851.1| Human DNA sequence from clone XX-HCC1954_35H09, ... 40 6.5
18gb|AC090844.7| Homo sapiens chromosome 17, clone RP11-387H17, co... 40 6.5
19emb|CR589878.6| Human DNA sequence from clone XX-HCC1954_10P22, ... 40 6.5
20gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 40 6.5
21emb|AL928920.5| Zebrafish DNA sequence from clone DKEY-14A7 in l... 40 6.5
22gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 o... 40 6.5
23dbj|AP000437.5| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 6.5

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                            
Query: 382      attcttcttgccatccgaacgcgacagcgggatgcctcctgactgcagctgttcatggag 441
                ||||||||||||||| ||||| |||| || || | || |||||| ||| || ||||||||
Sbjct: 15222709 attcttcttgccatcagaacgtgacaccgtgaggtctgctgactccagttggtcatggag 15222768

                                 
Query: 442      atgcttattgtcctcca 458
                |||||||||||||||||
Sbjct: 15222769 atgcttattgtcctcca 15222785



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>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0015G09
          Length = 140893

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                         
Query: 382   attcttcttgccatccgaacgcgacagcgggatgcctcctgactgcagctgttcatggag 441
             ||||||||||||||| ||||| |||| || || | || |||||| ||| || ||||||||
Sbjct: 97223 attcttcttgccatcagaacgtgacaccgtgaggtctgctgactccagttggtcatggag 97282

                              
Query: 442   atgcttattgtcctcca 458
             |||||||||||||||||
Sbjct: 97283 atgcttattgtcctcca 97299



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>dbj|AK063619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E03, full
           insert sequence
          Length = 1070

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 382 attcttcttgccatccgaacgcgacagcgggatgcctcctgactgcagctgttcatggag 441
           ||||||||||||||| ||||| |||| || || | || |||||| ||| || ||||||||
Sbjct: 663 attcttcttgccatcagaacgtgacaccgtgaggtctgctgactccagttggtcatggag 604

                            
Query: 442 atgcttattgtcctcca 458
           |||||||||||||||||
Sbjct: 603 atgcttattgtcctcca 587



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>gb|DQ168699.1| Dieuryneura stigma voucher CB0322 elongation factor-1 alpha gene,
           partial cds
          Length = 1052

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 39  ttggacgagttggtggcaagata 61
           |||||||||||||||||||||||
Sbjct: 490 ttggacgagttggtggcaagata 468



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 421      tgactgcagctgttcatggagatgcttattgtcctccagca 461
                |||||||||||| ||  |||||||||  |||||||||||||
Sbjct: 12862787 tgactgcagctgctcccggagatgctggttgtcctccagca 12862747



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>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0073A18
          Length = 176755

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 421   tgactgcagctgttcatggagatgcttattgtcctccagca 461
             |||||||||||| ||  |||||||||  |||||||||||||
Sbjct: 82269 tgactgcagctgctcccggagatgctggttgtcctccagca 82229



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>dbj|AK070852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065A17, full
           insert sequence
          Length = 1188

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 421 tgactgcagctgttcatggagatgcttattgtcctccagca 461
           |||||||||||| ||  |||||||||  |||||||||||||
Sbjct: 843 tgactgcagctgctcccggagatgctggttgtcctccagca 803



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>gb|AC171105.1| Drosophila melanogaster clone CH223-40I08, complete sequence
          Length = 53089

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    agttggtggcaagataacca 65
             ||||||||||||||||||||
Sbjct: 28887 agttggtggcaagataacca 28868



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>gb|AC113901.7| Rattus norvegicus 2 BAC CH230-328F5 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 157435

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 414    tgcctcctgactgcagctgt 433
              ||||||||||||||||||||
Sbjct: 138693 tgcctcctgactgcagctgt 138674



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>gb|AC012085.4| Homo sapiens 12 BAC RP11-887P2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170269

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    gtgcctaacaacagagcatt 258
              ||||||||||||||||||||
Sbjct: 160843 gtgcctaacaacagagcatt 160824



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>emb|Z93019.1|HS49C23 Human DNA sequence from clone RP1-49C23 on chromosome Xp11 Contains a
             malate dehydrogenase 1 NAD (soluble) (MDH1) pseudogene,
             complete sequence
          Length = 153078

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   agagcatttatgcagtaaag 270
             ||||||||||||||||||||
Sbjct: 84686 agagcatttatgcagtaaag 84705



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>emb|AL356964.12| Human DNA sequence from clone RP3-437L21 on chromosome 6, complete
            sequence
          Length = 24347

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 239  gtgcctaacaacagagcatt 258
            ||||||||||||||||||||
Sbjct: 1487 gtgcctaacaacagagcatt 1468



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>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7
          Length = 347365

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 450   tgtcctccagcaggctgtcg 469
             ||||||||||||||||||||
Sbjct: 10822 tgtcctccagcaggctgtcg 10803



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>emb|AL031024.1|DMC196F3 Drosophila melanogaster cosmid clone 196F3
          Length = 35835

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    agttggtggcaagataacca 65
             ||||||||||||||||||||
Sbjct: 11227 agttggtggcaagataacca 11246



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>emb|CR938745.1| Human DNA sequence from clone XX-HCC1954_32J13, complete sequence
          Length = 164033

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   ggtgcctaacaacagagcat 257
             ||||||||||||||||||||
Sbjct: 98966 ggtgcctaacaacagagcat 98985



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>emb|CR936885.1| Human DNA sequence from clone XX-HCC1954_35K12, complete sequence
          Length = 175639

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    ggtgcctaacaacagagcat 257
              ||||||||||||||||||||
Sbjct: 126433 ggtgcctaacaacagagcat 126452



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>emb|CR936851.1| Human DNA sequence from clone XX-HCC1954_35H09, complete sequence
          Length = 138165

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   ggtgcctaacaacagagcat 257
             ||||||||||||||||||||
Sbjct: 24248 ggtgcctaacaacagagcat 24229



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>gb|AC090844.7| Homo sapiens chromosome 17, clone RP11-387H17, complete sequence
          Length = 227857

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    ggtgcctaacaacagagcat 257
              ||||||||||||||||||||
Sbjct: 141482 ggtgcctaacaacagagcat 141501



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>emb|CR589878.6| Human DNA sequence from clone XX-HCC1954_10P22, complete sequence
          Length = 87071

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   ggtgcctaacaacagagcat 257
             ||||||||||||||||||||
Sbjct: 63956 ggtgcctaacaacagagcat 63975



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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 246     acaacagagcatttatgcag 265
               ||||||||||||||||||||
Sbjct: 1061382 acaacagagcatttatgcag 1061363



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>emb|AL928920.5| Zebrafish DNA sequence from clone DKEY-14A7 in linkage group 20, complete
              sequence
          Length = 195351

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     gaccgtttctccatgtttgg 42
              ||||||||||||||||||||
Sbjct: 152620 gaccgtttctccatgtttgg 152639



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>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete
             sequence
          Length = 304204

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    agttggtggcaagataacca 65
             ||||||||||||||||||||
Sbjct: 51939 agttggtggcaagataacca 51958



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>dbj|AP000437.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-39H21, complete
             sequence
          Length = 150125

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   atcagaccaacagcattcag 152
             ||||||||||||||||||||
Sbjct: 74832 atcagaccaacagcattcag 74851


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,413,057
Number of Sequences: 3902068
Number of extensions: 3413057
Number of successful extensions: 64793
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64728
Number of HSP's gapped (non-prelim): 65
length of query: 484
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 462
effective length of database: 17,147,199,772
effective search space: 7922006294664
effective search space used: 7922006294664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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