Clone Name | rbart37h02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 382 attcttcttgccatccgaacgcgacagcgggatgcctcctgactgcagctgttcatggag 441 ||||||||||||||| ||||| |||| || || | || |||||| ||| || |||||||| Sbjct: 15222709 attcttcttgccatcagaacgtgacaccgtgaggtctgctgactccagttggtcatggag 15222768 Query: 442 atgcttattgtcctcca 458 ||||||||||||||||| Sbjct: 15222769 atgcttattgtcctcca 15222785
>dbj|AP005763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0015G09 Length = 140893 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Plus Query: 382 attcttcttgccatccgaacgcgacagcgggatgcctcctgactgcagctgttcatggag 441 ||||||||||||||| ||||| |||| || || | || |||||| ||| || |||||||| Sbjct: 97223 attcttcttgccatcagaacgtgacaccgtgaggtctgctgactccagttggtcatggag 97282 Query: 442 atgcttattgtcctcca 458 ||||||||||||||||| Sbjct: 97283 atgcttattgtcctcca 97299
>dbj|AK063619.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E03, full insert sequence Length = 1070 Score = 73.8 bits (37), Expect = 5e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 382 attcttcttgccatccgaacgcgacagcgggatgcctcctgactgcagctgttcatggag 441 ||||||||||||||| ||||| |||| || || | || |||||| ||| || |||||||| Sbjct: 663 attcttcttgccatcagaacgtgacaccgtgaggtctgctgactccagttggtcatggag 604 Query: 442 atgcttattgtcctcca 458 ||||||||||||||||| Sbjct: 603 atgcttattgtcctcca 587
>gb|DQ168699.1| Dieuryneura stigma voucher CB0322 elongation factor-1 alpha gene, partial cds Length = 1052 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 39 ttggacgagttggtggcaagata 61 ||||||||||||||||||||||| Sbjct: 490 ttggacgagttggtggcaagata 468
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 421 tgactgcagctgttcatggagatgcttattgtcctccagca 461 |||||||||||| || ||||||||| ||||||||||||| Sbjct: 12862787 tgactgcagctgctcccggagatgctggttgtcctccagca 12862747
>dbj|AP005612.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0073A18 Length = 176755 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 421 tgactgcagctgttcatggagatgcttattgtcctccagca 461 |||||||||||| || ||||||||| ||||||||||||| Sbjct: 82269 tgactgcagctgctcccggagatgctggttgtcctccagca 82229
>dbj|AK070852.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065A17, full insert sequence Length = 1188 Score = 42.1 bits (21), Expect = 1.7 Identities = 36/41 (87%) Strand = Plus / Minus Query: 421 tgactgcagctgttcatggagatgcttattgtcctccagca 461 |||||||||||| || ||||||||| ||||||||||||| Sbjct: 843 tgactgcagctgctcccggagatgctggttgtcctccagca 803
>gb|AC171105.1| Drosophila melanogaster clone CH223-40I08, complete sequence Length = 53089 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 agttggtggcaagataacca 65 |||||||||||||||||||| Sbjct: 28887 agttggtggcaagataacca 28868
>gb|AC113901.7| Rattus norvegicus 2 BAC CH230-328F5 (Children's Hospital Oakland Research Institute) complete sequence Length = 157435 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 tgcctcctgactgcagctgt 433 |||||||||||||||||||| Sbjct: 138693 tgcctcctgactgcagctgt 138674
>gb|AC012085.4| Homo sapiens 12 BAC RP11-887P2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170269 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gtgcctaacaacagagcatt 258 |||||||||||||||||||| Sbjct: 160843 gtgcctaacaacagagcatt 160824
>emb|Z93019.1|HS49C23 Human DNA sequence from clone RP1-49C23 on chromosome Xp11 Contains a malate dehydrogenase 1 NAD (soluble) (MDH1) pseudogene, complete sequence Length = 153078 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agagcatttatgcagtaaag 270 |||||||||||||||||||| Sbjct: 84686 agagcatttatgcagtaaag 84705
>emb|AL356964.12| Human DNA sequence from clone RP3-437L21 on chromosome 6, complete sequence Length = 24347 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gtgcctaacaacagagcatt 258 |||||||||||||||||||| Sbjct: 1487 gtgcctaacaacagagcatt 1468
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 tgtcctccagcaggctgtcg 469 |||||||||||||||||||| Sbjct: 10822 tgtcctccagcaggctgtcg 10803
>emb|AL031024.1|DMC196F3 Drosophila melanogaster cosmid clone 196F3 Length = 35835 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 agttggtggcaagataacca 65 |||||||||||||||||||| Sbjct: 11227 agttggtggcaagataacca 11246
>emb|CR938745.1| Human DNA sequence from clone XX-HCC1954_32J13, complete sequence Length = 164033 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ggtgcctaacaacagagcat 257 |||||||||||||||||||| Sbjct: 98966 ggtgcctaacaacagagcat 98985
>emb|CR936885.1| Human DNA sequence from clone XX-HCC1954_35K12, complete sequence Length = 175639 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ggtgcctaacaacagagcat 257 |||||||||||||||||||| Sbjct: 126433 ggtgcctaacaacagagcat 126452
>emb|CR936851.1| Human DNA sequence from clone XX-HCC1954_35H09, complete sequence Length = 138165 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 ggtgcctaacaacagagcat 257 |||||||||||||||||||| Sbjct: 24248 ggtgcctaacaacagagcat 24229
>gb|AC090844.7| Homo sapiens chromosome 17, clone RP11-387H17, complete sequence Length = 227857 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ggtgcctaacaacagagcat 257 |||||||||||||||||||| Sbjct: 141482 ggtgcctaacaacagagcat 141501
>emb|CR589878.6| Human DNA sequence from clone XX-HCC1954_10P22, complete sequence Length = 87071 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ggtgcctaacaacagagcat 257 |||||||||||||||||||| Sbjct: 63956 ggtgcctaacaacagagcat 63975
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 acaacagagcatttatgcag 265 |||||||||||||||||||| Sbjct: 1061382 acaacagagcatttatgcag 1061363
>emb|AL928920.5| Zebrafish DNA sequence from clone DKEY-14A7 in linkage group 20, complete sequence Length = 195351 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 gaccgtttctccatgtttgg 42 |||||||||||||||||||| Sbjct: 152620 gaccgtttctccatgtttgg 152639
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 agttggtggcaagataacca 65 |||||||||||||||||||| Sbjct: 51939 agttggtggcaagataacca 51958
>dbj|AP000437.5| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-39H21, complete sequence Length = 150125 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 atcagaccaacagcattcag 152 |||||||||||||||||||| Sbjct: 74832 atcagaccaacagcattcag 74851 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,413,057 Number of Sequences: 3902068 Number of extensions: 3413057 Number of successful extensions: 64793 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64728 Number of HSP's gapped (non-prelim): 65 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)