>gb|AC105773.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1562_H01,
             complete sequence
          Length = 88352

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 108/127 (85%), Gaps = 5/127 (3%)
 Strand = Plus / Minus

                                                                         
Query: 292   gttcaggtgatggccacccagaacgcggccgcctgctccggctcccagttcccgccgcgc 351
             ||||||| | ||||||||||||| | ||| ||||||||||||||||| |||  |||||||
Sbjct: 81333 gttcaggaggtggccacccagaatggggcagcctgctccggctcccacttcttgccgcgc 81274

                                                                         
Query: 352   cttgccgccgtcgc----gccaccttccgcctccacgcaccgcccgccgcgggcgtactt 407
             || ||||||| |||    || ||| ||||||||||||||||||||||||||  |||||||
Sbjct: 81273 ctcgccgccgccgccgcggcgacc-tccgcctccacgcaccgcccgccgcgaacgtactt 81215

                    
Query: 408   cgcgacg 414
              ||||||
Sbjct: 81214 ggcgacg 81208

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 108/127 (85%), Gaps = 5/127 (3%)
 Strand = Plus / Minus

                                                                            
Query: 292      gttcaggtgatggccacccagaacgcggccgcctgctccggctcccagttcccgccgcgc 351
                ||||||| | ||||||||||||| | ||| ||||||||||||||||| |||  |||||||
Sbjct: 18775930 gttcaggaggtggccacccagaatggggcagcctgctccggctcccacttcttgccgcgc 18775871

                                                                            
Query: 352      cttgccgccgtcgc----gccaccttccgcctccacgcaccgcccgccgcgggcgtactt 407
                || ||||||| |||    || ||| ||||||||||||||||||||||||||  |||||||
Sbjct: 18775870 ctcgccgccgccgccgcggcgacc-tccgcctccacgcaccgcccgccgcgaacgtactt 18775812

                       
Query: 408      cgcgacg 414
                 ||||||
Sbjct: 18775811 ggcgacg 18775805

>ref|XM_475188.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 855

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 100/117 (85%), Gaps = 5/117 (4%)
 Strand = Plus / Minus

                                                                       
Query: 302 tggccacccagaacgcggccgcctgctccggctcccagttcccgccgcgccttgccgccg 361
           ||||||||||||| | ||| ||||||||||||||||| |||  ||||||||| |||||||
Sbjct: 847 tggccacccagaatggggcagcctgctccggctcccacttcttgccgcgcctcgccgccg 788

                                                                    
Query: 362 tcgc----gccaccttccgcctccacgcaccgcccgccgcgggcgtacttcgcgacg 414
            |||    || ||| ||||||||||||||||||||||||||  ||||||| ||||||
Sbjct: 787 ccgccgcggcgacc-tccgcctccacgcaccgcccgccgcgaacgtacttggcgacg 732

>emb|AL445435.11| Human DNA sequence from clone RP11-568G11 on chromosome 1 Contains the
             the 5' end of the RAB3-GAP150 gene for rab3
             GTPase-activating protein the non-catalytic subunit, a
             mortality factor 4 like 1 (MORF4L1) processed pseudogene
             and the serine/threonine kinase 6 (STK6) known processed
             pseudogene, complete sequence
          Length = 189953

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 244   aattcagcaggaaattcatcag 265
             ||||||||||||||||||||||
Sbjct: 76475 aattcagcaggaaattcatcag 76454

>ref|XM_465743.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1162

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 373 tccgcctccacgcaccgcccgccgc 397
           ||||||||||||||| |||||||||
Sbjct: 757 tccgcctccacgcacggcccgccgc 733

>ref|XM_591395.2| PREDICTED: Bos taurus similar to pre T-cell antigen receptor alpha
           (LOC513669), mRNA
          Length = 873

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 374 ccgcctccacgcaccgcccgccgcg 398
           |||||||||||| ||||||||||||
Sbjct: 630 ccgcctccacgccccgcccgccgcg 654

>emb|BX897700.1| Bartonella quintana str. Toulouse, complete genome
          Length = 1581384

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 240    aattaattcagcaggaaattcatca 264
              |||||||||||||| ||||||||||
Sbjct: 693839 aattaattcagcagcaaattcatca 693815

>gb|AE005975.1| Caulobacter crescentus CB15 section 301 of 359 of the complete genome
          Length = 12017

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 344  cgccgcgccttgccgccgtcg 364
            |||||||||||||||||||||
Sbjct: 5600 cgccgcgccttgccgccgtcg 5580

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 373      tccgcctccacgcaccgcccgccgc 397
                ||||||||||||||| |||||||||
Sbjct: 17140514 tccgcctccacgcacggcccgccgc 17140490

>dbj|AP004837.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0483C08
          Length = 143855

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 373    tccgcctccacgcaccgcccgccgc 397
              ||||||||||||||| |||||||||
Sbjct: 121887 tccgcctccacgcacggcccgccgc 121863

>dbj|AP004864.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0048K16
          Length = 159891

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 373   tccgcctccacgcaccgcccgccgc 397
             ||||||||||||||| |||||||||
Sbjct: 11281 tccgcctccacgcacggcccgccgc 11257

>dbj|AK105149.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-D03, full
           insert sequence
          Length = 1162

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 373 tccgcctccacgcaccgcccgccgc 397
           ||||||||||||||| |||||||||
Sbjct: 757 tccgcctccacgcacggcccgccgc 733

>gb|AC134248.3| Mus musculus BAC clone RP23-338G21 from chromosome 9, complete sequence
          Length = 206805

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    tccgcctccacgcaccgccc 392
              ||||||||||||||||||||
Sbjct: 201742 tccgcctccacgcaccgccc 201723

>gb|AC164123.4| Mus musculus BAC clone RP24-390M17 from chromosome 9, complete sequence
          Length = 130985

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    tccgcctccacgcaccgccc 392
              ||||||||||||||||||||
Sbjct: 115159 tccgcctccacgcaccgccc 115178

>emb|AL731573.8| Human DNA sequence from clone RP11-215C13 on chromosome 10, complete
              sequence
          Length = 131465

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     tgtagactttgagttaatac 37
              ||||||||||||||||||||
Sbjct: 104765 tgtagactttgagttaatac 104784

>emb|AL034371.16|HS273F20 Human DNA sequence from clone RP1-273F20 on chromosome 6q16.1-16.3
             Contains the gene for a novel protein and a CpG island,
             complete sequence
          Length = 111253

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 438   ctcctgaccagcctcctctg 457
             ||||||||||||||||||||
Sbjct: 42762 ctcctgaccagcctcctctg 42743

>gb|AC133618.3| Rattus norvegicus 18 BAC CH230-71N8 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 234684

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  gacagatctctctcagcctc 134
            ||||||||||||||||||||
Sbjct: 2593 gacagatctctctcagcctc 2612

>gb|AC093535.2| Homo sapiens chromosome 5 clone RP11-517I3, complete sequence
          Length = 132710

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 238   ataattaattcagcaggaaattca 261
             |||||||| |||||||||||||||
Sbjct: 65360 ataattaagtcagcaggaaattca 65337

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 422      cgtcctccggccgccgctcc 441
                ||||||||||||||||||||
Sbjct: 12292284 cgtcctccggccgccgctcc 12292265

>gb|AC011238.8| Homo sapiens BAC clone RP11-374C5 from 2, complete sequence
          Length = 155764

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    cagatctctctcagcctcag 136
              ||||||||||||||||||||
Sbjct: 112247 cagatctctctcagcctcag 112266

>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 312     gaacgcggccgcctgctccg 331
               ||||||||||||||||||||
Sbjct: 2534966 gaacgcggccgcctgctccg 2534947

>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0426D06
          Length = 162173

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 422    cgtcctccggccgccgctcc 441
              ||||||||||||||||||||
Sbjct: 116910 cgtcctccggccgccgctcc 116891

>dbj|AK121409.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132M16, full
           insert sequence
          Length = 1970

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 cgtcctccggccgccgctcc 441
           ||||||||||||||||||||
Sbjct: 32  cgtcctccggccgccgctcc 51

>ref|XM_556083.1| Anopheles gambiae str. PEST ENSANGP00000026205
           (ENSANGG00000022067), partial mRNA
          Length = 1044

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 363 cgcgccaccttccgcctcca 382
           ||||||||||||||||||||
Sbjct: 978 cgcgccaccttccgcctcca 959

>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome
          Length = 189370

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 487    cgctggctgcgcttggcggcattg 510
              ||||||| ||||||||||||||||
Sbjct: 176165 cgctggcggcgcttggcggcattg 176188

>gb|AC167663.3| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940143D9, complete sequence
          Length = 118759

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  cagttcccgccgcgccttgc 356
            ||||||||||||||||||||
Sbjct: 5212 cagttcccgccgcgccttgc 5231

>gb|AC167560.3| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940139D9, complete sequence
          Length = 118752

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 337  cagttcccgccgcgccttgc 356
            ||||||||||||||||||||
Sbjct: 5212 cagttcccgccgcgccttgc 5231

>gb|AC167664.4| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940124D9, complete sequence
          Length = 118889

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    cagttcccgccgcgccttgc 356
              ||||||||||||||||||||
Sbjct: 113547 cagttcccgccgcgccttgc 113528

>dbj|AB011855.1| Unidentified nitrogen-fixing bacteria nifH gene for nitrogenase,
           partial cds, clone CFN9
          Length = 423

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 340 ttcccgccgcgccttgccgccgtc 363
           |||| |||||||||||||||||||
Sbjct: 165 ttccagccgcgccttgccgccgtc 142


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,976,445
Number of Sequences: 3902068
Number of extensions: 3976445
Number of successful extensions: 80982
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80773
Number of HSP's gapped (non-prelim): 209
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)