ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37g07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-06
2gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-06
3gb|DQ298181.1| Oryza sativa WRKY transcription factor 45 mRNA, c... 60 7e-06
4tpg|BK005048.1| TPA: TPA_exp: Oryza sativa (indica cultivar-grou... 60 7e-06
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
6dbj|AK105939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
7dbj|AK103959.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
8dbj|AK066255.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 7e-06
9gb|AY870611.1| Oryza sativa (japonica cultivar-group) WRKY45 mRN... 60 7e-06
10gb|AC018711.4| Homo sapiens BAC clone RP11-324K4 from 1, complet... 46 0.11
11gb|AC093422.3| Homo sapiens chromosome 1 clone RP11-383G10, comp... 46 0.11
12dbj|AB194804.1| Bursaphelenchus mucronatus Bm-13g-1 mRNA for bet... 44 0.43
13ref|NM_185178.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.7
14gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.7
15emb|CR676515.2|CNS0FKYN Tetraodon nigroviridis full-length cDNA 42 1.7
16emb|CR673121.2|CNS0FICN Tetraodon nigroviridis full-length cDNA 42 1.7
17emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.7
18emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 42 1.7
19emb|BX649315.27| Zebrafish DNA sequence from clone DKEYP-101G1 i... 42 1.7
20dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.7
21dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
22gb|AC022298.31|AC022298 Mus musculus BAC RP23-423C8 (Roswell Pa... 42 1.7
23gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genom... 42 1.7
24dbj|AK069826.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.7
25gb|AY109206.1| Zea mays PCO065144 mRNA sequence 42 1.7
26emb|BX248416.3| Zebrafish DNA sequence from clone DKEY-75L1 in l... 42 1.7
27gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosom... 40 6.8
28gb|AF488414.1| Pennisetum glaucum BAC 311G2 complete sequence 40 6.8
29gb|AC119886.7| Mus musculus chromosome 14, clone RP24-218I13, co... 40 6.8
30gb|AC117202.2| Mus musculus BAC clone RP23-248L5 from 14, comple... 40 6.8
31gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, com... 40 6.8
32emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 40 6.8
33emb|BX322231.13| Zebrafish DNA sequence from clone CH211-145C1 i... 40 6.8
34emb|CR352324.11| Zebrafish DNA sequence from clone CH211-218L14 ... 40 6.8
35dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 6.8
36gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.8
37gb|AC010638.7|AC010638 Homo sapiens chromosome 5 clone CTD-2350J... 40 6.8
38emb|BX572076.4| Zebrafish DNA sequence from clone DKEY-69N5 in l... 40 6.8
39ref|XM_308776.2| Anopheles gambiae str. PEST ENSANGP00000014983 ... 40 6.8
40emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 6.8
41emb|BX470116.5| Zebrafish DNA sequence from clone DKEY-244B23 in... 40 6.8
42dbj|AP003973.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.8
43gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 6.8 
>gb|AC134346.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0018A03,
             complete sequence
          Length = 146278

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 438   cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
             ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 10659 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 10614
to top
>gb|AC136227.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0109A13, complete sequence
          Length = 134258

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                           
Query: 438   cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
             ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 86086 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 86041
to top
>gb|DQ298181.1| Oryza sativa WRKY transcription factor 45 mRNA, complete cds
          Length = 1377

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 438 cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
           ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 894 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 849
to top
>tpg|BK005048.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) WRKY
           transcription factor 45 (WRKY45) gene, complete cds
          Length = 1149

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 438 cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
           ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 993 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 948
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 438      cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
                ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 14859744 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 14859699
to top
>dbj|AK105939.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B10, full
           insert sequence
          Length = 1429

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 438 cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
           ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 955 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 910
to top
>dbj|AK103959.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-C02, full
           insert sequence
          Length = 1396

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 438 cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
           ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 927 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 882
to top
>dbj|AK066255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058O04, full
           insert sequence
          Length = 1453

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 438 cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
           ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 928 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 883
to top
>gb|AY870611.1| Oryza sativa (japonica cultivar-group) WRKY45 mRNA, complete cds
          Length = 1293

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 438 cgcggagctcccgggggtgcggctgctcagcacctcctccaggtcg 483
           ||||||||| ||||| ||| |||||||||||||||||||| |||||
Sbjct: 916 cgcggagctgccgggcgtgaggctgctcagcacctcctcctggtcg 871
to top
>gb|AC018711.4| Homo sapiens BAC clone RP11-324K4 from 1, complete sequence
          Length = 167334

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 21    ttttctgttcacctcccagtcac 43
             |||||||||||||||||||||||
Sbjct: 81457 ttttctgttcacctcccagtcac 81435
to top
>gb|AC093422.3| Homo sapiens chromosome 1 clone RP11-383G10, complete sequence
          Length = 180872

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 21     ttttctgttcacctcccagtcac 43
              |||||||||||||||||||||||
Sbjct: 106504 ttttctgttcacctcccagtcac 106526
to top
>dbj|AB194804.1| Bursaphelenchus mucronatus Bm-13g-1 mRNA for
           beta-1,3-endoglucanase, partial cds
          Length = 708

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 403 tcgccctggtcgggccaggtcg 424
           ||||||||||||||||||||||
Sbjct: 276 tcgccctggtcgggccaggtcg 255
to top
>ref|NM_185178.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1140

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 466 agcacctcctccaggtcgccg 486
           |||||||||||||||||||||
Sbjct: 317 agcacctcctccaggtcgccg 297
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 466      agcacctcctccaggtcgccg 486
                |||||||||||||||||||||
Sbjct: 35452321 agcacctcctccaggtcgccg 35452301
to top
>emb|CR676515.2|CNS0FKYN Tetraodon nigroviridis full-length cDNA
          Length = 587

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 463 ctcagcacctcctccaggtcg 483
           |||||||||||||||||||||
Sbjct: 278 ctcagcacctcctccaggtcg 258
to top
>emb|CR673121.2|CNS0FICN Tetraodon nigroviridis full-length cDNA
          Length = 737

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 463 ctcagcacctcctccaggtcg 483
           |||||||||||||||||||||
Sbjct: 319 ctcagcacctcctccaggtcg 299
to top
>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   cctggtcgggccaggtcgccg 427
             |||||||||||||||||||||
Sbjct: 95089 cctggtcgggccaggtcgccg 95069
to top
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   cctggtcgggccaggtcgccg 427
             |||||||||||||||||||||
Sbjct: 18132 cctggtcgggccaggtcgccg 18112
to top
>emb|BX649315.27| Zebrafish DNA sequence from clone DKEYP-101G1 in linkage group 22,
              complete sequence
          Length = 175847

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 169    aaaaatgtacagactaaacta 189
              |||||||||||||||||||||
Sbjct: 164632 aaaaatgtacagactaaacta 164612
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 393     ggacgtcacgtcgccctggtcgggc 417
               |||||||| ||||||||||||||||
Sbjct: 2955259 ggacgtcaagtcgccctggtcgggc 2955235
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 466      agcacctcctccaggtcgccg 486
                |||||||||||||||||||||
Sbjct: 35542393 agcacctcctccaggtcgccg 35542373
to top
>gb|AC022298.31|AC022298 Mus musculus  BAC RP23-423C8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 112209

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 227   cattatttgcatatactttacatac 251
             ||||||||||||||| |||||||||
Sbjct: 23572 cattatttgcatatattttacatac 23548
to top
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete
             sequence
          Length = 133846

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 466   agcacctcctccaggtcgccg 486
             |||||||||||||||||||||
Sbjct: 35305 agcacctcctccaggtcgccg 35325
to top
>dbj|AK069826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E05, full
           insert sequence
          Length = 1059

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 466 agcacctcctccaggtcgccg 486
           |||||||||||||||||||||
Sbjct: 674 agcacctcctccaggtcgccg 654
to top
>gb|AY109206.1| Zea mays PCO065144 mRNA sequence
          Length = 503

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 451 ggggtgcggctgctcagcacctcctccag 479
           |||||| ||||||| ||||||||||||||
Sbjct: 392 ggggtgaggctgctaagcacctcctccag 420



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 394 gacgtcacgtcgccctggtc 413
           ||||||||||||||||||||
Sbjct: 318 gacgtcacgtcgccctggtc 337
to top
>emb|BX248416.3| Zebrafish DNA sequence from clone DKEY-75L1 in linkage group 22, complete
              sequence
          Length = 155796

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 169    aaaaatgtacagactaaacta 189
              |||||||||||||||||||||
Sbjct: 145423 aaaaatgtacagactaaacta 145443
to top
>gb|AC162379.2| Mus musculus BAC clone RP23-132A15 from chromosome 12, complete sequence
          Length = 238126

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 152    acatgatacatagacataaa 171
              ||||||||||||||||||||
Sbjct: 217215 acatgatacatagacataaa 217196
to top
>gb|AF488414.1| Pennisetum glaucum BAC 311G2 complete sequence
          Length = 123096

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   ggagcggcatgaagtcctcg 336
             ||||||||||||||||||||
Sbjct: 51926 ggagcggcatgaagtcctcg 51907
to top
>gb|AC119886.7| Mus musculus chromosome 14, clone RP24-218I13, complete sequence
          Length = 138803

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 202    caggaagatggaggatccacgcag 225
              ||||||||||||||||||| ||||
Sbjct: 122409 caggaagatggaggatccaagcag 122386
to top
>gb|AC117202.2| Mus musculus BAC clone RP23-248L5 from 14, complete sequence
          Length = 209508

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ttgtgaggttttctgttcac 32
             ||||||||||||||||||||
Sbjct: 28628 ttgtgaggttttctgttcac 28647
to top
>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence
          Length = 188853

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    acatgatacatagacataaa 171
              ||||||||||||||||||||
Sbjct: 184867 acatgatacatagacataaa 184886
to top
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 410    ggtcgggccaggtcgccgcgccgt 433
              |||||||||||| |||||||||||
Sbjct: 131797 ggtcgggccaggccgccgcgccgt 131774
to top
>emb|BX322231.13| Zebrafish DNA sequence from clone CH211-145C1 in linkage group 9,
             complete sequence
          Length = 166681

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   acatgatacatagacataaa 171
             ||||||||||||||||||||
Sbjct: 49376 acatgatacatagacataaa 49357
to top
>emb|CR352324.11| Zebrafish DNA sequence from clone CH211-218L14 in linkage group 12,
             complete sequence
          Length = 206894

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aaaaatgtacagactaaact 188
             ||||||||||||||||||||
Sbjct: 58847 aaaaatgtacagactaaact 58828
to top
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 412     tcgggccaggtcgccgcgccgtgcagcg 439
               |||| |||||||||| ||||||||||||
Sbjct: 1191295 tcggcccaggtcgccacgccgtgcagcg 1191322
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 475     tccaggtcgccgccctcaag 494
               ||||||||||||||||||||
Sbjct: 3967884 tccaggtcgccgccctcaag 3967865
to top
>gb|AC010638.7|AC010638 Homo sapiens chromosome 5 clone CTD-2350J17, complete sequence
          Length = 129298

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   atagacataaaaatgtacag 180
             ||||||||||||||||||||
Sbjct: 96130 atagacataaaaatgtacag 96149
to top
>emb|BX572076.4| Zebrafish DNA sequence from clone DKEY-69N5 in linkage group 12,
             complete sequence
          Length = 183510

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aaaaatgtacagactaaact 188
             ||||||||||||||||||||
Sbjct: 76939 aaaaatgtacagactaaact 76920
to top
>ref|XM_308776.2| Anopheles gambiae str. PEST ENSANGP00000014983 (ENSANGG00000012494),
            partial mRNA
          Length = 2943

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 468  cacctcctccaggtcgccgccctc 491
            |||||||||||| |||||||||||
Sbjct: 2349 cacctcctccagatcgccgccctc 2326
to top
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 423     cgccgcgccgtgcagcgcgg 442
               ||||||||||||||||||||
Sbjct: 2542909 cgccgcgccgtgcagcgcgg 2542928
to top
>emb|BX470116.5| Zebrafish DNA sequence from clone DKEY-244B23 in linkage group 4,
             complete sequence
          Length = 195795

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    gtggcaaaaaacctcggccc 69
             ||||||||||||||||||||
Sbjct: 26604 gtggcaaaaaacctcggccc 26623
to top
>dbj|AP003973.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-89C3, complete
              sequence
          Length = 189099

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    tttgcatatactttacatac 251
              ||||||||||||||||||||
Sbjct: 102033 tttgcatatactttacatac 102052
to top
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 412     tcgggccaggtcgccgcgccgtgcagcg 439
               |||| |||||||||| ||||||||||||
Sbjct: 1224840 tcggcccaggtcgccacgccgtgcagcg 1224867


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,585,536
Number of Sequences: 3902068
Number of extensions: 3585536
Number of successful extensions: 66811
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66459
Number of HSP's gapped (non-prelim): 352
length of query: 499
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 477
effective length of database: 17,147,199,772
effective search space: 8179214291244
effective search space used: 8179214291244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top