ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479034.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
3dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
4ref|XM_506449.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.026
5ref|XM_479039.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
6dbj|AK105814.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
7dbj|AK062681.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.026
8dbj|AK065663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.10
9ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antige... 42 1.6
10gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 42 1.6
11gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, comple... 42 1.6
12gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome... 42 1.6
13emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on ch... 42 1.6
14gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Can... 42 1.6
15gb|AY328083.1| Hypocrea jecorina serine/threonine kinase IREI mR... 40 6.3
16ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 6.3
17ref|XM_479031.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
18gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
19ref|XM_949319.1| Theileria annulata strain Ankara serine proteas... 40 6.3
20gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, comp... 40 6.3
21emb|AL356693.37| Human DNA sequence from clone RP11-33M12 on chr... 40 6.3
22gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
23gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, com... 40 6.3
24gb|AC016650.6| Homo sapiens chromosome 5 clone RPCI-1_167J12, co... 40 6.3
25gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chrom... 40 6.3
26dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
27dbj|AB017062.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.3
28dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
29dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
30dbj|AP003398.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 6.3
31gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
32gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, com... 40 6.3 
>ref|XM_479034.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 776

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                              
Query: 237 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 287
           ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 516 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 466
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 237      tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 287
                ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 24424060 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 24424110



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 234      cgatcatggcttggcctctggctc 257
                ||||||||||||||||||||||||
Sbjct: 24434446 cgatcatggcttggcctctggctc 24434469



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                            
Query: 318      ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 377
                |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 24416988 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 24417044

                                  
Query: 378      tggcacctcggggtgcgg 395
                 |||||  ||||||||||
Sbjct: 24417045 cggcacgacggggtgcgg 24417062
to top
>dbj|AP003840.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1634_B10
          Length = 100294

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                
Query: 237   tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 287
             ||||||||||||||| ||||| || || |||||| |||||||||| |||||
Sbjct: 49927 tcatggcttggcctccggctccgggaagtggaactcgggcttcggcggcaa 49977



 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 234   cgatcatggcttggcctctggctc 257
             ||||||||||||||||||||||||
Sbjct: 60313 cgatcatggcttggcctctggctc 60336



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Plus

                                                                         
Query: 318   ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 377
             |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 42855 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 42911

                               
Query: 378   tggcacctcggggtgcgg 395
              |||||  ||||||||||
Sbjct: 42912 cggcacgacggggtgcgg 42929
to top
>ref|XM_506449.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.120
           mRNA
          Length = 629

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 234 cgatcatggcttggcctctggctc 257
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
to top
>ref|XM_479039.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 629

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 234 cgatcatggcttggcctctggctc 257
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
to top
>dbj|AK105814.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-C08, full
           insert sequence
          Length = 629

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 234 cgatcatggcttggcctctggctc 257
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
to top
>dbj|AK062681.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H05, full
           insert sequence
          Length = 629

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 234 cgatcatggcttggcctctggctc 257
           ||||||||||||||||||||||||
Sbjct: 424 cgatcatggcttggcctctggctc 401
to top
>dbj|AK065663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040D08, full
           insert sequence
          Length = 776

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 237 tcatggcttggcctctggctcaggaaaatggaacacgggcttcgggggcaa 287
           ||||||||||||||| ||||| || || |||||| | |||||||| |||||
Sbjct: 516 tcatggcttggcctccggctccgggaagtggaactctggcttcggcggcaa 466
to top
>ref|XM_593416.2| PREDICTED: Bos taurus similar to stromal antigen 3 (LOC515399),
            partial mRNA
          Length = 3164

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 74   acagattgagcagctgcacca 94
            |||||||||||||||||||||
Sbjct: 1719 acagattgagcagctgcacca 1739
to top
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 68      aaaggaacagattgagcagct 88
               |||||||||||||||||||||
Sbjct: 4032147 aaaggaacagattgagcagct 4032127
to top
>gb|AC116999.2| Mus musculus BAC clone RP23-28L10 from 19, complete sequence
          Length = 209671

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 54     catgaatatacataaaaggaa 74
              |||||||||||||||||||||
Sbjct: 128297 catgaatatacataaaaggaa 128277
to top
>gb|AC154859.2| Mus musculus BAC clone RP23-14B14 from chromosome 16, complete sequence
          Length = 200016

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 42     atgcatatacatcatgaatat 62
              |||||||||||||||||||||
Sbjct: 104456 atgcatatacatcatgaatat 104436
to top
>emb|CT030030.12| Mouse DNA sequence from clone RP23-123J19 on chromosome 12, complete
              sequence
          Length = 201738

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 60     tatacataaaaggaacagattgagc 84
              |||| ||||||||||||||||||||
Sbjct: 103112 tatatataaaaggaacagattgagc 103136
to top
>gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170723

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     atatcatgcatatacatcatg 57
              |||||||||||||||||||||
Sbjct: 135297 atatcatgcatatacatcatg 135277
to top
>gb|AY328083.1| Hypocrea jecorina serine/threonine kinase IREI mRNA, complete cds
          Length = 4494

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 368  tcggcacctctggcacctcg 387
            ||||||||||||||||||||
Sbjct: 1124 tcggcacctctggcacctcg 1143
to top
>ref|XM_506447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1634_B10.112
           mRNA
          Length = 1006

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                       
Query: 318 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 377
           |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 548 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 492

                             
Query: 378 tggcacctcggggtgcgg 395
            |||||  ||||||||||
Sbjct: 491 cggcacgacggggtgcgg 474
to top
>ref|XM_479031.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1005

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                       
Query: 318 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 377
           |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 545 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 489

                             
Query: 378 tggcacctcggggtgcgg 395
            |||||  ||||||||||
Sbjct: 488 cggcacgacggggtgcgg 471
to top
>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAb0050G15,
              complete sequence
          Length = 126156

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 395    gcacatggggctcctttggcacct 418
              ||||||||| ||||||||||||||
Sbjct: 103433 gcacatgggcctcctttggcacct 103456
to top
>ref|XM_949319.1| Theileria annulata strain Ankara serine protease (TA21265) partial
           mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 430 tggtgtggcatttcaggctt 449
           ||||||||||||||||||||
Sbjct: 834 tggtgtggcatttcaggctt 853
to top
>gb|AC117667.9| Mus musculus chromosome 6, clone RP23-367C6, complete sequence
          Length = 134538

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tgcatatcatgcatatacat 53
             ||||||||||||||||||||
Sbjct: 13943 tgcatatcatgcatatacat 13924
to top
>emb|AL356693.37| Human DNA sequence from clone RP11-33M12 on chromosome 1 Contains the
             3' end of the NPHP4 gene for nephronophthisis 4, complete
             sequence
          Length = 72610

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    atgtgcatatcatgcatata 50
             ||||||||||||||||||||
Sbjct: 57118 atgtgcatatcatgcatata 57099
to top
>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0052C03, complete sequence
          Length = 157178

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 395   gcacatggggctcctttggcacct 418
             ||||||||| ||||||||||||||
Sbjct: 37277 gcacatgggcctcctttggcacct 37300
to top
>gb|AC027779.10| Homo sapiens chromosome 11, clone RP11-98J9, complete sequence
          Length = 149059

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   ctcctttggcacctctggca 424
             ||||||||||||||||||||
Sbjct: 98369 ctcctttggcacctctggca 98388
to top
>gb|AC016650.6| Homo sapiens chromosome 5 clone RPCI-1_167J12, complete sequence
          Length = 184886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      caaaaattccaaacagaaac 20
              ||||||||||||||||||||
Sbjct: 139059 caaaaattccaaacagaaac 139040
to top
>gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chromosome unknown, complete
              sequence
          Length = 221601

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      caaaaattccaaacagaaac 20
              ||||||||||||||||||||
Sbjct: 191247 caaaaattccaaacagaaac 191228
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 395     gcacatggggctcctttggcacct 418
               ||||||||| ||||||||||||||
Sbjct: 6253999 gcacatgggcctcctttggcacct 6254022
to top
>dbj|AB017062.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21I16
          Length = 30578

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 11  aaacagaaacatacttattcatgt 34
           |||||||||||||||| |||||||
Sbjct: 701 aaacagaaacatactttttcatgt 724
to top
>dbj|AK106010.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-B01, full
           insert sequence
          Length = 1005

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                       
Query: 318 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 377
           |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 545 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 489

                             
Query: 378 tggcacctcggggtgcgg 395
            |||||  ||||||||||
Sbjct: 488 cggcacgacggggtgcgg 471
to top
>dbj|AK068696.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162L16, full
           insert sequence
          Length = 1006

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 64/78 (82%), Gaps = 3/78 (3%)
 Strand = Plus / Minus

                                                                       
Query: 318 ttcgtgcttcgggacctctggcacagcagggtgcggcaactcgtgctccttcggcacctc 377
           |||||| ||||| | ||| |||||||||||||| |||| |||| |   |||||||| |||
Sbjct: 548 ttcgtgtttcggcaactccggcacagcagggtgaggcacctcggg---cttcggcagctc 492

                             
Query: 378 tggcacctcggggtgcgg 395
            |||||  ||||||||||
Sbjct: 491 cggcacgacggggtgcgg 474
to top
>dbj|AP003398.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-170L9, complete
             sequence
          Length = 156829

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 86    gctgcaccatgcagtaccactcat 109
             |||| |||||||||||||||||||
Sbjct: 15520 gctgaaccatgcagtaccactcat 15497
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 395     gcacatggggctcctttggcacct 418
               ||||||||| ||||||||||||||
Sbjct: 6320466 gcacatgggcctcctttggcacct 6320489
to top
>gb|AC158219.4| Mus musculus chromosome 8, clone RP23-189N10, complete sequence
          Length = 215819

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    atgaatatacataaaaggaa 74
             ||||||||||||||||||||
Sbjct: 63341 atgaatatacataaaaggaa 63322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,603,295
Number of Sequences: 3902068
Number of extensions: 3603295
Number of successful extensions: 71865
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 71737
Number of HSP's gapped (non-prelim): 132
length of query: 467
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 445
effective length of database: 17,147,199,772
effective search space: 7630503898540
effective search space used: 7630503898540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top