Clone Name | rbart37f12 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_017404.2| Mus musculus mitochondrial ribosomal protein L39 (Mrpl39), mRNA Length = 1773 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tgcttaacacactggcacat 50 |||||||||||||||||||| Sbjct: 1279 tgcttaacacactggcacat 1260
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tggcacatccatccatctga 62 |||||||||||||||||||| Sbjct: 940990 tggcacatccatccatctga 941009
>ref|XM_572880.1| Cryptococcus neoformans var. neoformans JEC21 Voltage-gated potassium channel beta-2 subunit (CNI03480) partial mRNA Length = 1351 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tggcacatccatccatctga 62 |||||||||||||||||||| Sbjct: 47 tggcacatccatccatctga 66
>emb|AL021937.1|HS149A16 Human DNA sequence from clone RP1-149A16 on chromosome 22 Contains four novel genes (LOC339666, HSPC117), the RFPL3 gene for ret finger protein-like 3, a immunoglobulin lambda chain pseudogene, the RFPL3S gene for ret finger protein-like 3 antisense, the BPIL2 gene for bactericidal/permeability-increasing protein-like 2, the 5' end of the FBXO7 gene for F-box protein 7 and three CpG islands, complete sequence Length = 173354 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gcacatccatccatctgaag 64 |||||||||||||||||||| Sbjct: 20894 gcacatccatccatctgaag 20875
>gb|AC164162.2| Mus musculus BAC clone RP23-253E17 from chromosome 16, complete sequence Length = 174250 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tgcttaacacactggcacat 50 |||||||||||||||||||| Sbjct: 155812 tgcttaacacactggcacat 155793
>dbj|AK031942.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330504K13 product:mitochondrial ribosomal protein L39, full insert sequence Length = 1773 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tgcttaacacactggcacat 50 |||||||||||||||||||| Sbjct: 1279 tgcttaacacactggcacat 1260
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cagatccagatggggcttgacagt 95 ||||||||||||||||||| |||| Sbjct: 18845248 cagatccagatggggcttggcagt 18845225
>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485D10 Length = 147464 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cagatccagatggggcttgacagt 95 ||||||||||||||||||| |||| Sbjct: 10813 cagatccagatggggcttggcagt 10790
>dbj|AP005492.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0077L03 Length = 171177 Score = 40.1 bits (20), Expect = 1.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 cagatccagatggggcttgacagt 95 ||||||||||||||||||| |||| Sbjct: 170999 cagatccagatggggcttggcagt 170976
>emb|CT027693.11| Mouse DNA sequence from clone RP24-120H1 on chromosome 16, complete sequence Length = 186376 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tgcttaacacactggcacat 50 |||||||||||||||||||| Sbjct: 113832 tgcttaacacactggcacat 113851
>gb|AC114666.31| Mus musculus chromosome 5, clone RP24-175N6, complete sequence Length = 193158 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 actggcacatccatccatc 59 ||||||||||||||||||| Sbjct: 187275 actggcacatccatccatc 187293
>gb|AC112633.6| Rattus norvegicus 11 BAC CH230-200K21 (Children's Hospital Oakland Research Institute) complete sequence Length = 230130 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 atccagatggggcttgaca 93 ||||||||||||||||||| Sbjct: 46360 atccagatggggcttgaca 46378
>gb|AC097117.12| Rattus norvegicus 1 BAC CH230-36C10 (Children's Hospital Oakland Research Institute) complete sequence Length = 197926 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 cacactggcacatccatcc 56 ||||||||||||||||||| Sbjct: 7378 cacactggcacatccatcc 7360
>gb|AY661658.1| Sorghum bicolor clone BAC 796all, complete sequence Length = 103167 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 52 catccatctgaagttctgaacag 74 |||| |||||||||||||||||| Sbjct: 26606 catcgatctgaagttctgaacag 26628
>gb|AY661657.1| Sorghum bicolor clone BAC 60H10, complete sequence Length = 125927 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 52 catccatctgaagttctgaacag 74 |||| |||||||||||||||||| Sbjct: 93334 catcgatctgaagttctgaacag 93356 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 52 catccatctgaagttctgaacag 74 |||| |||||||||||||||||| Sbjct: 93251 catcgatctgaagttctgaacag 93273
>gb|AC140460.3| Mus musculus BAC clone RP24-151D4 from chromosome 9, complete sequence Length = 196545 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 aacacactggcacatccat 54 ||||||||||||||||||| Sbjct: 115824 aacacactggcacatccat 115842
>gb|AC110236.8| Mus musculus chromosome 15, clone RP23-104L4, complete sequence Length = 233499 Score = 38.2 bits (19), Expect = 7.0 Identities = 22/23 (95%) Strand = Plus / Plus Query: 70 aacagatccagatggggcttgac 92 ||||||| ||||||||||||||| Sbjct: 121057 aacagatgcagatggggcttgac 121079
>emb|AL359915.14| Human DNA sequence from clone RP11-418J17 on chromosome 1 Contains the 3' end of a novel gene, a ribosomal protein L6 (RPL6) pseudogene and the 5' end of a novel gene, complete sequence Length = 159158 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 gggcttgacagtacttact 102 ||||||||||||||||||| Sbjct: 78407 gggcttgacagtacttact 78425
>gb|AC166328.4| Mus musculus BAC clone RP23-31H5 from chromosome 5, complete sequence Length = 215189 Score = 38.2 bits (19), Expect = 7.0 Identities = 19/19 (100%) Strand = Plus / Plus Query: 41 actggcacatccatccatc 59 ||||||||||||||||||| Sbjct: 54735 actggcacatccatccatc 54753 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,210,533 Number of Sequences: 3902068 Number of extensions: 1210533 Number of successful extensions: 86242 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86176 Number of HSP's gapped (non-prelim): 66 length of query: 146 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 125 effective length of database: 17,151,101,840 effective search space: 2143887730000 effective search space used: 2143887730000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)