ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart37f11 |
|---|---|
| Clone Library Name | barley_pub |
>RB11C_LOTJA (Q40193) Ras-related protein Rab11C| Length = 216 Score = 52.0 bits (123), Expect = 9e-07 Identities = 27/53 (50%), Positives = 32/53 (60%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPSTNAK 346 EA N+EKAF T+L+EI+ IVSKK QGTTINVA+ S N K Sbjct: 158 EATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTK 210
>RB11A_TOBAC (Q40523) Ras-related protein Rab11A| Length = 216 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/53 (45%), Positives = 34/53 (64%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPSTNAK 346 EA+NV+KAF T+L++I+ I+SKK + QGTTINV++ S N K Sbjct: 158 EALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVK 210
>RB2BV_BETVU (Q39434) Ras-related protein Rab2BV| Length = 214 Score = 49.3 bits (116), Expect = 6e-06 Identities = 25/53 (47%), Positives = 35/53 (66%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPSTNAK 346 EA+N+EKAF T+L+EI+ I+SKK ++ QGTTINVA+ S N + Sbjct: 158 EAVNIEKAFQTILTEIYHIISKK--ALAAQEASSNLPGQGTTINVADASANQR 208
>RB11A_ARATH (Q96283) Ras-related protein Rab11A| Length = 217 Score = 48.1 bits (113), Expect = 1e-05 Identities = 28/54 (51%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGR-SMQGTTINVAEPSTNAK 346 EA NVEKAF T+L EI+ I+SKK AN QGTTINV + S AK Sbjct: 158 EATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTSGGAK 211
>RB11C_ARATH (O04486) Ras-related protein Rab11C| Length = 217 Score = 46.2 bits (108), Expect = 5e-05 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPS-TNAK 346 EA+NVEKAF T+LSE+++I+SKK AN +G TI+VA S +NAK Sbjct: 158 EALNVEKAFQTILSEVYRIISKK-SISSDQTTANANIKEGQTIDVAATSESNAK 210
>RB11D_LOTJA (Q40194) Ras-related protein Rab11D| Length = 218 Score = 42.7 bits (99), Expect = 6e-04 Identities = 23/53 (43%), Positives = 32/53 (60%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPSTNAK 346 EA NVE AF VL++I++IVSK+ ++G +G TINV E S+ K Sbjct: 159 EATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLK 211
>RB11E_LOTJA (Q40195) Ras-related protein Rab11E| Length = 218 Score = 39.3 bits (90), Expect = 0.006 Identities = 22/50 (44%), Positives = 29/50 (58%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPST 355 EA NVE AF VL++I++IVSK+ + QG TINV E S+ Sbjct: 159 EATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSS 208
>YPT3_NICPL (Q01111) Ras-related protein YPT3| Length = 218 Score = 37.4 bits (85), Expect = 0.023 Identities = 19/53 (35%), Positives = 29/53 (54%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPSTNAK 346 EA NVE AF L++I++IVSKK + +G TIN+ + ++ K Sbjct: 159 EATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWK 211
>RGP2_ORYSA (Q40723) Ras-related protein RGP2 (GTP-binding regulatory protein| RGP2) Length = 217 Score = 36.6 bits (83), Expect = 0.040 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKX-XXXXXXXXANGRSMQGTTINVAEPSTNAK 346 EA+NVE+AF T+++E++ IV++K + QG TI++ + N K Sbjct: 158 EAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASRPLPSQGKTISIDSAAGNTK 211
>RGP1_ORYSA (P25766) Ras-related protein RGP1 (GTP-binding regulatory protein| RGP1) Length = 226 Score = 36.2 bits (82), Expect = 0.052 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRS--MQGTTINV--AEPSTNAK 346 E+ N+E AF TVL+EI++IVSKK ++G S ++GT I V EP+ K Sbjct: 164 ESTNLENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSLLKGTKIVVPGQEPAPPTK 220
>RB11A_LOTJA (Q40191) Ras-related protein Rab11A| Length = 226 Score = 35.8 bits (81), Expect = 0.068 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 1/50 (2%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKX-XXXXXXXXANGRSMQGTTINVAEPS 358 EA NVE AF TVL+EI+ IV+KK N S+ G I + P+ Sbjct: 163 EATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKIIIPGPA 212
>YPTC6_CHLRE (Q39572) Ras-related protein YPTC6| Length = 216 Score = 33.5 bits (75), Expect = 0.34 Identities = 15/23 (65%), Positives = 19/23 (82%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 E+ NVEKAF +L+EI+ IVSKK Sbjct: 158 ESTNVEKAFQQILTEIYHIVSKK 180
>ARA2_ARATH (P28185) Ras-related protein ARA-2| Length = 216 Score = 33.1 bits (74), Expect = 0.44 Identities = 21/53 (39%), Positives = 28/53 (52%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPSTNAK 346 +A NVE AF VL++IH+IVSK+ +G TINV E + K Sbjct: 159 DATNVENAFTEVLTQIHKIVSKRSVDGGGESA--DLPGKGETINVKEDGSVLK 209
>RB11A_CHICK (Q5ZJN2) Ras-related protein Rab-11A| Length = 216 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE AF T+L+EI++IVS+K Sbjct: 157 DSTNVEAAFQTILTEIYRIVSQK 179
>RB11A_RAT (P62494) Ras-related protein Rab-11A (Rab-11) (24KG)| Length = 215 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE AF T+L+EI++IVS+K Sbjct: 156 DSTNVEAAFQTILTEIYRIVSQK 178
>RB11A_RABIT (P62493) Ras-related protein Rab-11A (Rab-11)| Length = 215 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE AF T+L+EI++IVS+K Sbjct: 156 DSTNVEAAFQTILTEIYRIVSQK 178
>RB11A_PONPY (Q5R9M7) Ras-related protein Rab-11A| Length = 215 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE AF T+L+EI++IVS+K Sbjct: 156 DSTNVEAAFQTILTEIYRIVSQK 178
>RB11A_PIG (Q52NJ1) Ras-related protein Rab-11A| Length = 215 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE AF T+L+EI++IVS+K Sbjct: 156 DSTNVEAAFQTILTEIYRIVSQK 178
>RB11A_MOUSE (P62492) Ras-related protein Rab-11A (Rab-11)| Length = 215 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE AF T+L+EI++IVS+K Sbjct: 156 DSTNVEAAFQTILTEIYRIVSQK 178
>RB11A_HUMAN (P62491) Ras-related protein Rab-11A (Rab-11) (YL8)| Length = 215 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE AF T+L+EI++IVS+K Sbjct: 156 DSTNVEAAFQTILTEIYRIVSQK 178
>RB11A_CANFA (P62490) Ras-related protein Rab-11A (Rab-11)| Length = 215 Score = 31.2 bits (69), Expect = 1.7 Identities = 13/23 (56%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE AF T+L+EI++IVS+K Sbjct: 156 DSTNVEAAFQTILTEIYRIVSQK 178
>YPT3_SCHPO (P17610) GTP-binding protein ypt3 (RAB)| Length = 214 Score = 31.2 bits (69), Expect = 1.7 Identities = 20/51 (39%), Positives = 28/51 (54%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKKXXXXXXXXXANGRSMQGTTINVAEPSTN 352 +A NVE+AF TVL+EI +IVS + G T+N+A P+ N Sbjct: 156 DASNVEEAFQTVLTEIFRIVSNRSLEAGDDGV---HPTAGQTLNIA-PTMN 202
>RB11D_TOBAC (Q40522) Ras-related protein Rab11D| Length = 222 Score = 31.2 bits (69), Expect = 1.7 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK-XXXXXXXXXANGRSMQGTTINVAEP 361 EA N+E AF TVL+EI IV+KK N S+ G I V P Sbjct: 161 EATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPASLTGKKILVPGP 209
>YFAS_ECOLI (P76464) Hypothetical UPF0192 protein yfaS precursor| Length = 1534 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 180 VLAIGITSHGIQDEKQEYLRPNYNLCMSWSSSAKTKVSDK 299 + A G+ G+ + + YLR NL M WS +V DK Sbjct: 901 ITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDK 940
>YFAS_ECO57 (Q8XE35) Hypothetical UPF0192 protein yfaS precursor| Length = 1534 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 180 VLAIGITSHGIQDEKQEYLRPNYNLCMSWSSSAKTKVSDK 299 + A G+ G+ + + YLR NL M WS +V DK Sbjct: 901 ITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDK 940
>CHRD_HUMAN (Q9H2X0) Chordin precursor| Length = 955 Score = 30.0 bits (66), Expect = 3.7 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = -2 Query: 496 QCGEGIPYCAE*NSPDCKQKSTCSTG--VRCCQR 401 +CG G+P+C DC +C +G RCC R Sbjct: 901 RCGAGVPHC---ERDDCSLPLSCGSGKESRCCSR 931
>RB11B_ARATH (Q39222) Ras-related protein Rab11| Length = 216 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 EA NVE AF VL++I++I SKK Sbjct: 159 EATNVEDAFAEVLTQIYRITSKK 181
>RB11B_DISOM (P22129) Ras-related protein Rab-11B (ORA3)| Length = 218 Score = 29.6 bits (65), Expect = 4.9 Identities = 12/23 (52%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE+AF +L+EI++IVS+K Sbjct: 157 DSTNVEEAFKNILTEIYRIVSQK 179
>RB11B_RAT (O35509) Ras-related protein Rab-11B| Length = 217 Score = 29.6 bits (65), Expect = 4.9 Identities = 12/23 (52%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE+AF +L+EI++IVS+K Sbjct: 156 DSTNVEEAFKNILTEIYRIVSQK 178
>RB11B_MOUSE (P46638) Ras-related protein Rab-11B| Length = 217 Score = 29.6 bits (65), Expect = 4.9 Identities = 12/23 (52%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE+AF +L+EI++IVS+K Sbjct: 156 DSTNVEEAFKNILTEIYRIVSQK 178
>RB11B_HUMAN (Q15907) Ras-related protein Rab-11B (GTP-binding protein YPT3)| Length = 217 Score = 29.6 bits (65), Expect = 4.9 Identities = 12/23 (52%), Positives = 20/23 (86%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 ++ NVE+AF +L+EI++IVS+K Sbjct: 156 DSTNVEEAFKNILTEIYRIVSQK 178
>GLP1_CAEEL (P13508) Protein glp-1 precursor| Length = 1295 Score = 29.3 bits (64), Expect = 6.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 505 GGNQCGEGIPYCAE*NSPDCKQKSTCSTGV 416 GG+ C EGI +CA+ +C + STC V Sbjct: 147 GGSYCEEGIDHCAQ---NECAEGSTCVNSV 173
>RIC2_ORYSA (P40393) Ras-related protein RIC2| Length = 217 Score = 29.3 bits (64), Expect = 6.4 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = -3 Query: 504 EAINVEKAFHTVLSEIHQIVSKK 436 E+ NVE AF VL++I++IVSK+ Sbjct: 160 ESTNVENAFAEVLTQIYRIVSKR 182
>CHRD_MOUSE (Q9Z0E2) Chordin precursor| Length = 948 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%) Frame = -2 Query: 496 QCGEGIPYCAE*NSPDCKQKSTCSTG--VRCCQRAFDARN 383 +CG G+P+C DC +C +G RCC R+ Sbjct: 896 RCGAGVPHC---ERDDCSPPLSCGSGKESRCCSHCTAQRS 932 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,333,114 Number of Sequences: 219361 Number of extensions: 1291607 Number of successful extensions: 2946 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2854 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2943 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
