Clone Name | rbart37f11 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_190607.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 651 Score = 147 bits (74), Expect = 4e-32 Identities = 148/170 (87%), Gaps = 2/170 (1%) Strand = Plus / Minus Query: 327 aactggaacagcaagaaccttttgcgttgg-tggatggttcagcaacgttaatagtcgtt 385 |||| ||||||||||||||||||| | || |||| | |||||||||||| || || ||| Sbjct: 649 aactagaacagcaagaaccttttgtggcggctgga-gcttcagcaacgttgatcgtagtt 591 Query: 386 ccttgcatcgaacgcccgttggcagcagcggactcctgtgctgcaagtgcttttttgctt 445 |||||||| |||||||| || | || ||||| ||||| |||||||||||||| |||||| Sbjct: 590 ccttgcatggaacgcccatttgtagacgcggattcctgagctgcaagtgctttcttgctt 531 Query: 446 acaatctggtgaatttcactcagcacagtatggaatgccttctccacatt 495 |||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 530 acaatctggtgaatttcactcaatacagtatggaatgctttctccacatt 481
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 147 bits (74), Expect = 4e-32 Identities = 148/170 (87%), Gaps = 2/170 (1%) Strand = Plus / Plus Query: 327 aactggaacagcaagaaccttttgcgttgg-tggatggttcagcaacgttaatagtcgtt 385 |||| ||||||||||||||||||| | || |||| | |||||||||||| || || ||| Sbjct: 36461478 aactagaacagcaagaaccttttgtggcggctgga-gcttcagcaacgttgatcgtagtt 36461536 Query: 386 ccttgcatcgaacgcccgttggcagcagcggactcctgtgctgcaagtgcttttttgctt 445 |||||||| |||||||| || | || ||||| ||||| |||||||||||||| |||||| Sbjct: 36461537 ccttgcatggaacgcccatttgtagacgcggattcctgagctgcaagtgctttcttgctt 36461596 Query: 446 acaatctggtgaatttcactcagcacagtatggaatgccttctccacatt 495 |||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 36461597 acaatctggtgaatttcactcaatacagtatggaatgctttctccacatt 36461646
>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0005H10 Length = 142885 Score = 147 bits (74), Expect = 4e-32 Identities = 148/170 (87%), Gaps = 2/170 (1%) Strand = Plus / Plus Query: 327 aactggaacagcaagaaccttttgcgttgg-tggatggttcagcaacgttaatagtcgtt 385 |||| ||||||||||||||||||| | || |||| | |||||||||||| || || ||| Sbjct: 113317 aactagaacagcaagaaccttttgtggcggctgga-gcttcagcaacgttgatcgtagtt 113375 Query: 386 ccttgcatcgaacgcccgttggcagcagcggactcctgtgctgcaagtgcttttttgctt 445 |||||||| |||||||| || | || ||||| ||||| |||||||||||||| |||||| Sbjct: 113376 ccttgcatggaacgcccatttgtagacgcggattcctgagctgcaagtgctttcttgctt 113435 Query: 446 acaatctggtgaatttcactcagcacagtatggaatgccttctccacatt 495 |||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 113436 acaatctggtgaatttcactcaatacagtatggaatgctttctccacatt 113485
>dbj|AK071303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087L18, full insert sequence Length = 1131 Score = 147 bits (74), Expect = 4e-32 Identities = 148/170 (87%), Gaps = 2/170 (1%) Strand = Plus / Minus Query: 327 aactggaacagcaagaaccttttgcgttgg-tggatggttcagcaacgttaatagtcgtt 385 |||| ||||||||||||||||||| | || |||| | |||||||||||| || || ||| Sbjct: 831 aactagaacagcaagaaccttttgtggcggctgga-gcttcagcaacgttgatcgtagtt 773 Query: 386 ccttgcatcgaacgcccgttggcagcagcggactcctgtgctgcaagtgcttttttgctt 445 |||||||| |||||||| || | || ||||| ||||| |||||||||||||| |||||| Sbjct: 772 ccttgcatggaacgcccatttgtagacgcggattcctgagctgcaagtgctttcttgctt 713 Query: 446 acaatctggtgaatttcactcagcacagtatggaatgccttctccacatt 495 |||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 712 acaatctggtgaatttcactcaatacagtatggaatgctttctccacatt 663
>gb|AC005026.2| Homo sapiens BAC clone GS1-489L14 from 7, complete sequence Length = 123526 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 aaattcaagagcataataattc 26 |||||||||||||||||||||| Sbjct: 81053 aaattcaagagcataataattc 81074
>ref|NM_001040105.1| Homo sapiens mucin 17, cell surface associated (MUC17), mRNA Length = 14360 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 cacttccactggaaccagttc 323 ||||||||||||||||||||| Sbjct: 8048 cacttccactggaaccagttc 8068
>emb|Z73951.1|LJRAB11C L.japonicus mRNA for small GTP-binding protein, RAB11C Length = 1031 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 419 tcctgtgctgcaagtgcttttttgcttacaatctggt 455 ||||| || ||||||||||||||||| ||||| |||| Sbjct: 754 tcctgagcagcaagtgcttttttgctaacaatatggt 718
>gb|AC124684.3| Mus musculus BAC clone RP24-375D13 from chromosome 1, complete sequence Length = 167927 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gggattcaggatgagaaacaa 227 ||||||||||||||||||||| Sbjct: 145067 gggattcaggatgagaaacaa 145047
>gb|AC105446.4| Homo sapiens BAC clone RP11-395B7 from 7, complete sequence Length = 139517 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 cacttccactggaaccagttc 323 ||||||||||||||||||||| Sbjct: 76649 cacttccactggaaccagttc 76669
>emb|AJ606308.1| Homo sapiens mRNA for secreted mucin MUC17 (MUC17 gene) Length = 14094 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 cacttccactggaaccagttc 323 ||||||||||||||||||||| Sbjct: 8048 cacttccactggaaccagttc 8068
>emb|AJ606307.1| Homo sapiens mRNA for membrane mucin MUC17 (MUC17 gene) Length = 14246 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 cacttccactggaaccagttc 323 ||||||||||||||||||||| Sbjct: 8048 cacttccactggaaccagttc 8068
>gb|AC162174.4| Mus musculus chromosome 1, clone RP23-306P24, complete sequence Length = 211734 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 ggagaggcaggttatagagta 169 ||||||||||||||||||||| Sbjct: 8400 ggagaggcaggttatagagta 8380
>gb|AC171212.3| Gallus gallus BAC clone CH261-72C23 from chromosome ul, complete sequence Length = 202705 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 ttattattgttgttaacagga 56 ||||||||||||||||||||| Sbjct: 127642 ttattattgttgttaacagga 127622
>emb|AL359951.4|CNS05TF3 Human chromosome 14 DNA sequence BAC R-196A3 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176202 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 38 attattgttgttaacaggaaa 58 ||||||||||||||||||||| Sbjct: 115120 attattgttgttaacaggaaa 115100
>gb|AC153644.3| Mus musculus BAC clone RP24-531A1 from 1, complete sequence Length = 166988 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gggattcaggatgagaaacaa 227 ||||||||||||||||||||| Sbjct: 45124 gggattcaggatgagaaacaa 45104
>gb|AC139368.10| Mus musculus chromosome 1, clone RP24-534C15, complete sequence Length = 166278 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 ggagaggcaggttatagagta 169 ||||||||||||||||||||| Sbjct: 65573 ggagaggcaggttatagagta 65553
>emb|AL928610.8| Zebrafish DNA sequence from clone CH211-245P6, complete sequence Length = 82988 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 29 ttgacaattattattgttgtt 49 ||||||||||||||||||||| Sbjct: 14635 ttgacaattattattgttgtt 14655
>gb|AY774516.1| Synthetic construct Francisella tularensis clone FLH157998.01X NT02FT1677 gene, complete cds Length = 1077 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaattcaagagcataataat 24 |||||||||||||||||||| Sbjct: 95 aaattcaagagcataataat 114
>gb|AY701840.1| Rattus fuscipes greyii clone RfgG4 microsatellite sequence Length = 640 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 aaaatgggaatgatttgatg 149 |||||||||||||||||||| Sbjct: 555 aaaatgggaatgatttgatg 536
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagcataataattccattgacaat 36 |||||||||||||||| ||||||| Sbjct: 1698488 gagcataataattccagtgacaat 1698511
>gb|AC068608.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-434O14, complete sequence Length = 191358 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ttgttgttaacaggaaataa 61 |||||||||||||||||||| Sbjct: 140895 ttgttgttaacaggaaataa 140876
>gb|AC147554.2| Mus musculus BAC clone RP24-274B6 from chromosome 7, complete sequence Length = 154146 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 tgggaatgatttgatggaga 153 |||||||||||||||||||| Sbjct: 145488 tgggaatgatttgatggaga 145507
>emb|Z35603.1|CET02C12 Caenorhabditis elegans Cosmid T02C12, complete sequence Length = 22800 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ttctgcgaaaacaaaagttt 291 |||||||||||||||||||| Sbjct: 3347 ttctgcgaaaacaaaagttt 3366
>gb|AC116327.4| Mus musculus BAC clone RP24-68L14 from 7, complete sequence Length = 194290 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 tgggaatgatttgatggaga 153 |||||||||||||||||||| Sbjct: 161604 tgggaatgatttgatggaga 161585
>gb|AC012590.5| Homo sapiens BAC clone CTD-2375H4 from 7, complete sequence Length = 149708 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 caggatgagaaacaagaata 232 |||||||||||||||||||| Sbjct: 114302 caggatgagaaacaagaata 114321
>emb|AL929401.8| Human DNA sequence from clone RP11-366E13 on chromosome X Contains the gene for a novel protein similar to 40S ribosomal protein S26 (RPS26) and two CpG islands, complete sequence Length = 194095 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 211 ttcaggatgagaaacaagaa 230 |||||||||||||||||||| Sbjct: 173328 ttcaggatgagaaacaagaa 173347
>emb|AL132671.20|HSDJ92C8 Human DNA sequence from clone RP1-92C8 on chromosome 6 Contains a novel gene, a RAP1A pseudogene, the 5' end of the ROS1 gene for v-ros UR2 sarcoma virus oncogene homolog 1 (avian), the 5' end of the DCBLD1 gene for discoidin CUB and LCCL domain containing 1 and two CpG islands, complete sequence Length = 131060 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 459 tttcactcagcacagtatggaatg 482 |||||||||||||| ||||||||| Sbjct: 27769 tttcactcagcacaatatggaatg 27746
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 13 gagcataataattccattgacaat 36 |||||||||||||||| ||||||| Sbjct: 1661683 gagcataataattccagtgacaat 1661660
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 gagcataataattccattgacaat 36 |||||||||||||||| ||||||| Sbjct: 1664466 gagcataataattccagtgacaat 1664489
>emb|BX323597.9| Zebrafish DNA sequence from clone CH211-227N13 in linkage group 11, complete sequence Length = 177773 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 acaattattattgttgttaa 51 |||||||||||||||||||| Sbjct: 135679 acaattattattgttgttaa 135660
>gb|AC159538.20| Medicago truncatula clone mth2-48f16, complete sequence Length = 123581 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aattattattgttgttaaca 53 |||||||||||||||||||| Sbjct: 58289 aattattattgttgttaaca 58270
>gb|AC104803.4| Homo sapiens BAC clone RP11-460H9 from 4, complete sequence Length = 102923 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aattattattgttgttaaca 53 |||||||||||||||||||| Sbjct: 56373 aattattattgttgttaaca 56354
>gb|AC021539.10| Homo sapiens chromosome 4, clone RP11-460H9, complete sequence Length = 191158 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 aattattattgttgttaaca 53 |||||||||||||||||||| Sbjct: 144608 aattattattgttgttaaca 144589
>gb|AC008465.5| Homo sapiens chromosome 5 clone CTC-361C3, complete sequence Length = 106076 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 aattattattgttgttaaca 53 |||||||||||||||||||| Sbjct: 46515 aattattattgttgttaaca 46534
>emb|BX323556.6| Zebrafish DNA sequence from clone CH211-278P7 in linkage group 8, complete sequence Length = 178137 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 attattattgttgttaacag 54 |||||||||||||||||||| Sbjct: 70701 attattattgttgttaacag 70720
>emb|BX571976.11| Zebrafish DNA sequence from clone DKEY-174I19 in linkage group 18, complete sequence Length = 183462 Score = 40.1 bits (20), Expect = 6.9 Identities = 33/36 (91%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 16 cataataattccattgacaattattattgttgttaa 51 ||||||||||||||| | ||||||||||||||||| Sbjct: 100564 cataataattccatt-attattattattgttgttaa 100530
>emb|CR376851.5| Zebrafish DNA sequence from clone DKEY-48N5 in linkage group 22, complete sequence Length = 51574 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 tgacaattattattgttgtt 49 |||||||||||||||||||| Sbjct: 14960 tgacaattattattgttgtt 14941
>emb|AM233362.1| Francisella tularensis subsp. holarctica strain LVS complete genome Length = 1895994 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaattcaagagcataataat 24 |||||||||||||||||||| Sbjct: 455216 aaattcaagagcataataat 455235
>emb|AJ749949.1| Francisella tularensis subsp. tularensis SCHU S4 complete genome Length = 1892819 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaattcaagagcataataat 24 |||||||||||||||||||| Sbjct: 413874 aaattcaagagcataataat 413893
>dbj|AP003502.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-69K18, complete sequence Length = 93670 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atacaaaatgggaatgattt 145 |||||||||||||||||||| Sbjct: 59822 atacaaaatgggaatgattt 59841
>emb|CR556713.11| Zebrafish DNA sequence from clone DKEY-28O14 in linkage group 11, complete sequence Length = 229692 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 ttcaactggaacagcaagaa 343 |||||||||||||||||||| Sbjct: 43649 ttcaactggaacagcaagaa 43668
>emb|AM039899.1| Hordeum vulgare partial mRNA for chromomethylase 1 (cmt1 gene) Length = 2441 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ccattgacaattattattgt 45 |||||||||||||||||||| Sbjct: 2398 ccattgacaattattattgt 2417
>dbj|AP004912.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT11L19, TM0070, complete sequence Length = 128164 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ttcaggatgagaaacaagaa 230 |||||||||||||||||||| Sbjct: 58717 ttcaggatgagaaacaagaa 58698
>gb|AY872104.1| Synthetic construct hypothetical protein (FTT0407) gene, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 aaattcaagagcataataat 24 |||||||||||||||||||| Sbjct: 173 aaattcaagagcataataat 192
>dbj|AP004551.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-167K18, complete sequence Length = 91093 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atacaaaatgggaatgattt 145 |||||||||||||||||||| Sbjct: 1070 atacaaaatgggaatgattt 1089 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,967,956 Number of Sequences: 3902068 Number of extensions: 4967956 Number of successful extensions: 125109 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 124875 Number of HSP's gapped (non-prelim): 228 length of query: 506 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 484 effective length of database: 17,147,199,772 effective search space: 8299244689648 effective search space used: 8299244689648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)