ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart37f08 |
|---|---|
| Clone Library Name | barley_pub |
>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 2452 Score = 36.6 bits (83), Expect = 0.031 Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 2/130 (1%) Frame = +1 Query: 64 YSGQHVYKIFLGKYYLSRNMLLYIFMRLHNTIGPTK*L*ATPNSDNKVSSVTEDGHSTYK 243 YS + IF K ++ N I+ ++ PT N++N S T + + Sbjct: 2227 YSPNPMLDIFSPKPQINHN----IYSPSYSPTSPTY------NANNAYYSPTSPKNQNDQ 2276 Query: 244 SCIS--YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFV 417 ++ Y+ ++P Y + +P+YS P+YS + Y +P+ Y Sbjct: 2277 MNVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTS 2336 Query: 418 PRYDMVATSY 447 P+Y + Y Sbjct: 2337 PKYSPTSPKY 2346 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/66 (22%), Positives = 27/66 (40%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P+Y +P+YS P+YS + Y +P Y + P++ Sbjct: 2318 YSPTSPKYSPTSPKYSPTSPKYSPTSPKY---SPTSPVAQNIASPNYSPYSITSPKFSPT 2374 Query: 436 ATSYGI 453 + +Y I Sbjct: 2375 SPAYSI 2380
>ZN294_MOUSE (Q6A009) Zinc finger protein 294 (Zfp-294)| Length = 1767 Score = 35.4 bits (80), Expect = 0.070 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = +1 Query: 73 QHVYKIFL-GKYYLSRNMLLYIFMRLHNTIGPTK*L*ATPNSDNKVSSVTEDGHSTYKSC 249 QHV +L G+ Y+ R I ++LH T+ TK L NSD+ VS V + HS + S Sbjct: 779 QHVKNDYLIGEVYVGR-----IIVKLHETLSKTKDLSEAANSDSSVSFVCDVVHSFFSSA 833 Query: 250 ISYDFVAPRYDMV 288 + P D++ Sbjct: 834 GGGLLMPPSEDLL 846
>RPB1_CRIGR (P11414) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (RPB1) (Fragment) Length = 467 Score = 35.4 bits (80), Expect = 0.070 Identities = 20/89 (22%), Positives = 33/89 (37%) Frame = +1 Query: 181 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 ++P+ T S S Y +P+Y +P+YS P+YS + Y TP+ Sbjct: 325 SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 384 Query: 361 XXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 Y P+Y + +Y Sbjct: 385 YSPTSPTYSPTSPVYTPTSPKYSPTSPTY 413 Score = 35.0 bits (79), Expect = 0.092 Identities = 22/88 (25%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + SY +P Y +P YS P YS + Y +P Sbjct: 130 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 189 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + SY Sbjct: 190 SPTSPSYSPTSPSYSPTSPSYSPTSPSY 217 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 125 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 184 Query: 433 VATSY 447 + SY Sbjct: 185 TSPSY 189 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 118 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 177 Query: 433 VATSY 447 + SY Sbjct: 178 TSPSY 182 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 111 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 170 Query: 433 VATSY 447 + SY Sbjct: 171 TSPSY 175 Score = 34.3 bits (77), Expect = 0.16 Identities = 19/89 (21%), Positives = 34/89 (38%) Frame = +1 Query: 181 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 ++P + + T S S SY +P+Y +P YS P Y+ + Y +P+ Sbjct: 304 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 363 Query: 361 XXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +Y P+Y + +Y Sbjct: 364 YSPTSPKYSPTSPTYSPTTPKYSPTSPTY 392 Score = 34.3 bits (77), Expect = 0.16 Identities = 21/88 (23%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + +Y +P Y +P YS P YS + Y +PR Sbjct: 249 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 308 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + Y Sbjct: 309 TPQSPTYTPSSPSYSPSSPSYSPTSPKY 336 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 174 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 233 Query: 433 VATSY 447 + SY Sbjct: 234 TSPSY 238 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 167 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 226 Query: 433 VATSY 447 + SY Sbjct: 227 TSPSY 231 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 160 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 219 Query: 433 VATSY 447 + SY Sbjct: 220 TSPSY 224 Score = 33.9 bits (76), Expect = 0.20 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P Y+ P YS + Y +P SY P Y Sbjct: 237 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 296 Query: 433 VATSY 447 + SY Sbjct: 297 TSPSY 301 Score = 33.5 bits (75), Expect = 0.27 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 216 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 275 Query: 433 VATSY 447 + +Y Sbjct: 276 TSPNY 280 Score = 33.5 bits (75), Expect = 0.27 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 188 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 247 Query: 433 VATSY 447 + +Y Sbjct: 248 TSPNY 252 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 209 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 268 Query: 433 VATSY 447 + +Y Sbjct: 269 TSPNY 273 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 195 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 254 Query: 433 VATSY 447 + SY Sbjct: 255 TSPSY 259 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 181 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 240 Query: 433 VATSY 447 + +Y Sbjct: 241 TSPNY 245 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/65 (26%), Positives = 25/65 (38%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y ++P SY P+Y Sbjct: 279 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 338 Query: 433 VATSY 447 + SY Sbjct: 339 TSPSY 343 Score = 32.7 bits (73), Expect = 0.45 Identities = 21/88 (23%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN + T S + SY +P Y +P YS P YS + Y +P Sbjct: 242 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 301 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +Y P Y + SY Sbjct: 302 SPSSPRYTPQSPTYTPSSPSYSPSSPSY 329 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 223 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 282 Query: 433 VATSY 447 + SY Sbjct: 283 TSPSY 287 Score = 32.3 bits (72), Expect = 0.59 Identities = 16/65 (24%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P Y+ + Y +P +Y P Y Sbjct: 230 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 289 Query: 433 VATSY 447 + SY Sbjct: 290 TSPSY 294 Score = 32.3 bits (72), Expect = 0.59 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 202 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 261 Query: 433 VATSY 447 + SY Sbjct: 262 TSPSY 266 Score = 31.6 bits (70), Expect = 1.0 Identities = 20/88 (22%), Positives = 31/88 (35%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + SY +PRY +P Y+ P YS + Y +P+ Sbjct: 277 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 336 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 Y P+Y + Y Sbjct: 337 TPTSPSYSPSSPEYTPTSPKYSPTSPKY 364 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 268 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 109 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 168 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/64 (23%), Positives = 25/64 (39%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P+Y +P YS P+YS + Y +P +Y P+Y Sbjct: 364 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 423 Query: 436 ATSY 447 + +Y Sbjct: 424 SPTY 427 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/64 (23%), Positives = 21/64 (32%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P+Y +P+YS P YS Y +P Y P Y Sbjct: 357 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPT 416 Query: 436 ATSY 447 + Y Sbjct: 417 SPKY 420 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 Y +P+Y +P YS P+YS + Y +P+ Sbjct: 399 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPK 433
>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1853 Score = 35.4 bits (80), Expect = 0.070 Identities = 18/65 (27%), Positives = 24/65 (36%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY PRY Sbjct: 1622 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSP 1681 Query: 433 VATSY 447 + +Y Sbjct: 1682 TSPTY 1686 Score = 34.7 bits (78), Expect = 0.12 Identities = 17/65 (26%), Positives = 24/65 (36%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +PR +Y P Y Sbjct: 1643 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSP 1702 Query: 433 VATSY 447 + +Y Sbjct: 1703 TSPTY 1707 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/61 (27%), Positives = 22/61 (36%) Frame = +1 Query: 265 VAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATS 444 V+P Y +P YS P YS + Y +P SY P Y + S Sbjct: 1612 VSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1671 Query: 445 Y 447 Y Sbjct: 1672 Y 1672 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/56 (28%), Positives = 22/56 (39%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVP 420 SY +P Y +PRYS P YS + Y +P SY+ + P Sbjct: 1664 SYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSP 1719 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1650 SYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSP 1709 Query: 433 VATSY 447 + SY Sbjct: 1710 TSPSY 1714 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/65 (24%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1636 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSP 1695 Query: 433 VATSY 447 + +Y Sbjct: 1696 TSPTY 1700 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/65 (26%), Positives = 22/65 (33%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1615 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1674 Query: 433 VATSY 447 + Y Sbjct: 1675 SSPRY 1679 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/59 (27%), Positives = 22/59 (37%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYD 429 SY +P Y +P YS PRYS + Y +P +Y P Y+ Sbjct: 1657 SYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYE 1715 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/65 (24%), Positives = 22/65 (33%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P Y P Y Sbjct: 1629 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPRYSPTSPTYSP 1688 Query: 433 VATSY 447 + +Y Sbjct: 1689 TSPTY 1693 Score = 28.5 bits (62), Expect = 8.6 Identities = 16/71 (22%), Positives = 24/71 (33%) Frame = +1 Query: 235 TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMF 414 TY F +P+Y +P YS P Y+ + Y +P Y Sbjct: 1765 TYNPTSPRAFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPADQPGTSNQYSPS 1824 Query: 415 VPRYDMVATSY 447 P Y + +Y Sbjct: 1825 SPTYSPSSPTY 1835 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/65 (26%), Positives = 25/65 (38%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P+Y +P+YS P Y+ + Y +PR Y P Y Sbjct: 1737 SYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR--------AFSSPQYSPTSPTYSP 1788 Query: 433 VATSY 447 + SY Sbjct: 1789 TSPSY 1793
>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1852 Score = 35.4 bits (80), Expect = 0.070 Identities = 18/65 (27%), Positives = 24/65 (36%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY PRY Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSP 1677 Query: 433 VATSY 447 + +Y Sbjct: 1678 TSPTY 1682 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 24/65 (36%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +PR +Y P Y Sbjct: 1639 SYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSP 1698 Query: 433 VATSY 447 + +Y Sbjct: 1699 TSPTY 1703 Score = 33.1 bits (74), Expect = 0.35 Identities = 20/79 (25%), Positives = 26/79 (32%) Frame = +1 Query: 211 SVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXX 390 S T +S V+P Y +P YS P YS + Y +P Sbjct: 1590 SPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649 Query: 391 XXXSYDMFVPRYDMVATSY 447 SY P Y + SY Sbjct: 1650 TSPSYSPSSPSYSPSSPSY 1668 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/65 (24%), Positives = 22/65 (33%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P Y P Y Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSP 1684 Query: 433 VATSY 447 + +Y Sbjct: 1685 TSPTY 1689 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/65 (26%), Positives = 22/65 (33%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 1670 Query: 433 VATSY 447 + Y Sbjct: 1671 SSPRY 1675 Score = 31.2 bits (69), Expect = 1.3 Identities = 16/65 (24%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSP 1691 Query: 433 VATSY 447 + +Y Sbjct: 1692 TSPTY 1696 Score = 30.0 bits (66), Expect = 2.9 Identities = 16/63 (25%), Positives = 26/63 (41%) Frame = +1 Query: 235 TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMF 414 +Y+S Y +P+Y +P YS P YS + Y +P+ +Y+ Sbjct: 1709 SYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPT 1768 Query: 415 VPR 423 PR Sbjct: 1769 SPR 1771 Score = 30.0 bits (66), Expect = 2.9 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1646 SYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSP 1705 Query: 433 VATSY 447 + SY Sbjct: 1706 TSPSY 1710 Score = 30.0 bits (66), Expect = 2.9 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIV--ASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYD 429 Y +P++ M +P YS P YS A+G +P SY P Y Sbjct: 1575 YSPSSPQFSMTSPHYSPTSPSYSPTSPAAGQSPVSPSYSPTSPSYSPTSPSYSPTSPSYS 1634 Query: 430 MVATSY 447 + SY Sbjct: 1635 PTSPSY 1640 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/59 (27%), Positives = 22/59 (37%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYD 429 SY +P Y +P YS PRYS + Y +P +Y P Y+ Sbjct: 1653 SYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYE 1711 Score = 29.3 bits (64), Expect = 5.0 Identities = 16/71 (22%), Positives = 24/71 (33%) Frame = +1 Query: 235 TYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMF 414 TY F +P+Y +P YS P Y+ + Y +P Y Sbjct: 1764 TYNPTSPRGFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPT 1823 Query: 415 VPRYDMVATSY 447 P Y + +Y Sbjct: 1824 SPTYSPSSPTY 1834 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/58 (29%), Positives = 24/58 (41%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETP 357 +P+ S + S S SY +PRY +P YS P YS + Y +P Sbjct: 1644 SPSYSPTSPSYSPSSPSYSPSSPSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSP 1701
>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1752 Score = 35.4 bits (80), Expect = 0.070 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Frame = +1 Query: 211 SVTEDGHST----YKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXX 378 S + G+ST S SY +P Y +P YS P YS + Y +P Sbjct: 1559 SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP 1618 Query: 379 XXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + SY Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSY 1641 Score = 35.0 bits (79), Expect = 0.092 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1605 SYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664 Query: 433 VATSY 447 + SY Sbjct: 1665 TSPSY 1669 Score = 35.0 bits (79), Expect = 0.092 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1591 SYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1650 Query: 433 VATSY 447 + SY Sbjct: 1651 TSPSY 1655 Score = 35.0 bits (79), Expect = 0.092 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1584 SYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643 Query: 433 VATSY 447 + SY Sbjct: 1644 TSPSY 1648 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1598 SYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657 Query: 433 VATSY 447 + SY Sbjct: 1658 TSPSY 1662 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1682 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741 Query: 433 VATSY 447 + SY Sbjct: 1742 TSPSY 1746 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1675 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734 Query: 433 VATSY 447 + SY Sbjct: 1735 TSPSY 1739 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1668 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727 Query: 433 VATSY 447 + SY Sbjct: 1728 TSPSY 1732 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1661 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720 Query: 433 VATSY 447 + SY Sbjct: 1721 TSPSY 1725 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1654 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713 Query: 433 VATSY 447 + SY Sbjct: 1714 TSPSY 1718 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1647 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706 Query: 433 VATSY 447 + SY Sbjct: 1707 TSPSY 1711 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1640 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699 Query: 433 VATSY 447 + SY Sbjct: 1700 TSPSY 1704 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1633 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692 Query: 433 VATSY 447 + SY Sbjct: 1693 TSPSY 1697 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1626 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685 Query: 433 VATSY 447 + SY Sbjct: 1686 TSPSY 1690 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678 Query: 433 VATSY 447 + SY Sbjct: 1679 TSPSY 1683 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1612 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671 Query: 433 VATSY 447 + SY Sbjct: 1672 TSPSY 1676 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/64 (26%), Positives = 22/64 (34%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1689 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748 Query: 433 VATS 444 + S Sbjct: 1749 TSPS 1752 Score = 30.0 bits (66), Expect = 2.9 Identities = 19/72 (26%), Positives = 27/72 (37%) Frame = +1 Query: 232 STYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDM 411 S YK S + +P ++P Y + P YS + GY +P SY Sbjct: 1529 SPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYS-TSPAYMPSSPSYSPTSPSYSP 1587 Query: 412 FVPRYDMVATSY 447 P Y + SY Sbjct: 1588 TSPSYSPTSPSY 1599
>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 35.4 bits (80), Expect = 0.070 Identities = 20/89 (22%), Positives = 33/89 (37%) Frame = +1 Query: 181 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 ++P+ T S S Y +P+Y +P+YS P+YS + Y TP+ Sbjct: 1828 SSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 1887 Query: 361 XXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 Y P+Y + +Y Sbjct: 1888 YSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916 Score = 35.0 bits (79), Expect = 0.092 Identities = 22/88 (25%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + SY +P Y +P YS P YS + Y +P Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + SY Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1628 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687 Query: 433 VATSY 447 + SY Sbjct: 1688 TSPSY 1692 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680 Query: 433 VATSY 447 + SY Sbjct: 1681 TSPSY 1685 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673 Query: 433 VATSY 447 + SY Sbjct: 1674 TSPSY 1678 Score = 34.3 bits (77), Expect = 0.16 Identities = 19/89 (21%), Positives = 34/89 (38%) Frame = +1 Query: 181 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 ++P + + T S S SY +P+Y +P YS P Y+ + Y +P+ Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKYSPTSPK 1866 Query: 361 XXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +Y P+Y + +Y Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895 Score = 34.3 bits (77), Expect = 0.16 Identities = 21/88 (23%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + +Y +P Y +P YS P YS + Y +PR Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + Y Sbjct: 1812 TPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736 Query: 433 VATSY 447 + SY Sbjct: 1737 TSPSY 1741 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729 Query: 433 VATSY 447 + SY Sbjct: 1730 TSPSY 1734 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722 Query: 433 VATSY 447 + SY Sbjct: 1723 TSPSY 1727 Score = 33.9 bits (76), Expect = 0.20 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P Y+ P YS + Y +P SY P Y Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799 Query: 433 VATSY 447 + SY Sbjct: 1800 TSPSY 1804 Score = 33.5 bits (75), Expect = 0.27 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1719 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 1778 Query: 433 VATSY 447 + +Y Sbjct: 1779 TSPNY 1783 Score = 33.5 bits (75), Expect = 0.27 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1691 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750 Query: 433 VATSY 447 + +Y Sbjct: 1751 TSPNY 1755 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771 Query: 433 VATSY 447 + +Y Sbjct: 1772 TSPNY 1776 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1698 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 1757 Query: 433 VATSY 447 + SY Sbjct: 1758 TSPSY 1762 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743 Query: 433 VATSY 447 + +Y Sbjct: 1744 TSPNY 1748 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/65 (26%), Positives = 25/65 (38%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y ++P SY P+Y Sbjct: 1782 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 1841 Query: 433 VATSY 447 + SY Sbjct: 1842 TSPSY 1846 Score = 32.7 bits (73), Expect = 0.45 Identities = 21/88 (23%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN + T S + SY +P Y +P YS P YS + Y +P Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +Y P Y + SY Sbjct: 1805 SPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1726 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 1785 Query: 433 VATSY 447 + SY Sbjct: 1786 TSPSY 1790 Score = 32.3 bits (72), Expect = 0.59 Identities = 16/65 (24%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P Y+ + Y +P +Y P Y Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 1792 Query: 433 VATSY 447 + SY Sbjct: 1793 TSPSY 1797 Score = 32.3 bits (72), Expect = 0.59 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1705 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 1764 Query: 433 VATSY 447 + SY Sbjct: 1765 TSPSY 1769 Score = 31.6 bits (70), Expect = 1.0 Identities = 20/88 (22%), Positives = 31/88 (35%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + SY +PRY +P Y+ P YS + Y +P+ Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 Y P+Y + Y Sbjct: 1840 TPTSPSYSPSSPEYTPASPKYSPTSPKY 1867 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 268 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/64 (23%), Positives = 25/64 (39%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P+Y +P YS P+YS + Y +P +Y P+Y Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 1926 Query: 436 ATSY 447 + +Y Sbjct: 1927 SPTY 1930 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/64 (23%), Positives = 21/64 (32%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P+Y +P+YS P YS Y +P Y P Y Sbjct: 1860 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPT 1919 Query: 436 ATSY 447 + Y Sbjct: 1920 SPKY 1923 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 Y +P+Y +P YS P+YS + Y +P+ Sbjct: 1902 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPK 1936
>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RPB1) Length = 1970 Score = 35.4 bits (80), Expect = 0.070 Identities = 20/89 (22%), Positives = 33/89 (37%) Frame = +1 Query: 181 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 ++P+ T S S Y +P+Y +P+YS P+YS + Y TP+ Sbjct: 1828 SSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPK 1887 Query: 361 XXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 Y P+Y + +Y Sbjct: 1888 YSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916 Score = 35.0 bits (79), Expect = 0.092 Identities = 22/88 (25%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + SY +P Y +P YS P YS + Y +P Sbjct: 1633 SPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1692 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + SY Sbjct: 1693 SPTSPSYSPTSPSYSPTSPSYSPTSPSY 1720 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1628 SYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687 Query: 433 VATSY 447 + SY Sbjct: 1688 TSPSY 1692 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1621 SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680 Query: 433 VATSY 447 + SY Sbjct: 1681 TSPSY 1685 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673 Query: 433 VATSY 447 + SY Sbjct: 1674 TSPSY 1678 Score = 34.3 bits (77), Expect = 0.16 Identities = 19/89 (21%), Positives = 34/89 (38%) Frame = +1 Query: 181 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 ++P + + T S S SY +P+Y +P YS P Y+ + Y +P+ Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 1866 Query: 361 XXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +Y P+Y + +Y Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTY 1895 Score = 34.3 bits (77), Expect = 0.16 Identities = 21/88 (23%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + +Y +P Y +P YS P YS + Y +PR Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRY 1811 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + Y Sbjct: 1812 TPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1677 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1736 Query: 433 VATSY 447 + SY Sbjct: 1737 TSPSY 1741 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1729 Query: 433 VATSY 447 + SY Sbjct: 1730 TSPSY 1734 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1722 Query: 433 VATSY 447 + SY Sbjct: 1723 TSPSY 1727 Score = 33.9 bits (76), Expect = 0.20 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P Y+ P YS + Y +P SY P Y Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSP 1799 Query: 433 VATSY 447 + SY Sbjct: 1800 TSPSY 1804 Score = 33.5 bits (75), Expect = 0.27 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1719 SYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTP 1778 Query: 433 VATSY 447 + +Y Sbjct: 1779 TSPNY 1783 Score = 33.5 bits (75), Expect = 0.27 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1691 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1750 Query: 433 VATSY 447 + +Y Sbjct: 1751 TSPNY 1755 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1712 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSP 1771 Query: 433 VATSY 447 + +Y Sbjct: 1772 TSPNY 1776 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1698 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTP 1757 Query: 433 VATSY 447 + SY Sbjct: 1758 TSPSY 1762 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1684 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1743 Query: 433 VATSY 447 + +Y Sbjct: 1744 TSPNY 1748 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/65 (26%), Positives = 25/65 (38%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y ++P SY P+Y Sbjct: 1782 NYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTP 1841 Query: 433 VATSY 447 + SY Sbjct: 1842 TSPSY 1846 Score = 32.7 bits (73), Expect = 0.45 Identities = 21/88 (23%), Positives = 30/88 (34%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN + T S + SY +P Y +P YS P YS + Y +P Sbjct: 1745 SPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSY 1804 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +Y P Y + SY Sbjct: 1805 SPSSPRYTPQSPTYTPSSPSYSPSSPSY 1832 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1726 SYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSP 1785 Query: 433 VATSY 447 + SY Sbjct: 1786 TSPSY 1790 Score = 32.3 bits (72), Expect = 0.59 Identities = 16/65 (24%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P Y+ + Y +P +Y P Y Sbjct: 1733 SYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSP 1792 Query: 433 VATSY 447 + SY Sbjct: 1793 TSPSY 1797 Score = 32.3 bits (72), Expect = 0.59 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1705 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSP 1764 Query: 433 VATSY 447 + SY Sbjct: 1765 TSPSY 1769 Score = 31.6 bits (70), Expect = 1.0 Identities = 20/88 (22%), Positives = 31/88 (35%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +PN S + S + SY +PRY +P Y+ P YS + Y +P+ Sbjct: 1780 SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKY 1839 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 Y P+Y + Y Sbjct: 1840 TPTSPSYSPSSPEYTPTSPKYSPTSPKY 1867 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 268 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1612 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1671 Score = 31.2 bits (69), Expect = 1.3 Identities = 15/64 (23%), Positives = 25/64 (39%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P+Y +P YS P+YS + Y +P +Y P+Y Sbjct: 1867 YSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPT 1926 Query: 436 ATSY 447 + +Y Sbjct: 1927 SPTY 1930 Score = 30.4 bits (67), Expect = 2.3 Identities = 15/64 (23%), Positives = 21/64 (32%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P+Y +P+YS P YS Y +P Y P Y Sbjct: 1860 YSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPT 1919 Query: 436 ATSY 447 + Y Sbjct: 1920 SPKY 1923 Score = 28.5 bits (62), Expect = 8.6 Identities = 11/35 (31%), Positives = 18/35 (51%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 Y +P+Y +P YS P+YS + Y +P+ Sbjct: 1902 YTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPK 1936
>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1599 Score = 35.4 bits (80), Expect = 0.070 Identities = 18/67 (26%), Positives = 24/67 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1507 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1566 Query: 433 VATSYGI 453 + SY + Sbjct: 1567 TSPSYSV 1573 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1500 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1559 Query: 433 VATSY 447 + SY Sbjct: 1560 TSPSY 1564 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1493 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1552 Query: 433 VATSY 447 + SY Sbjct: 1553 TSPSY 1557 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1486 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1545 Query: 433 VATSY 447 + SY Sbjct: 1546 TSPSY 1550 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1479 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1538 Query: 433 VATSY 447 + SY Sbjct: 1539 TSPSY 1543 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1472 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1531 Query: 433 VATSY 447 + SY Sbjct: 1532 TSPSY 1536 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 24/65 (36%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y + Sbjct: 1514 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSV 1573 Query: 433 VATSY 447 +S+ Sbjct: 1574 SMSSF 1578 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 268 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1470 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1529 Score = 29.6 bits (65), Expect = 3.8 Identities = 22/89 (24%), Positives = 32/89 (35%) Frame = +1 Query: 181 ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPR 360 +TP+SD+ S + + S D + R +P YS P YS + Y +P Sbjct: 1435 STPSSDSFSISSGNWSPTHLEMAYSRD-LGERLSPTSPSYSPTSPSYSPTSPSYSPTSPS 1493 Query: 361 XXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + SY Sbjct: 1494 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1522
>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) (Fragment) Length = 902 Score = 35.0 bits (79), Expect = 0.092 Identities = 21/85 (24%), Positives = 32/85 (37%) Frame = +1 Query: 193 SDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXX 372 S + ++S + + +Y S Y +P Y +P YS P YS + Y +P Sbjct: 700 SPSAMNSPGYNANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 759 Query: 373 XXXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + SY Sbjct: 760 SPSYSPTSPSYSPTSPFYSPTSPSY 784 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 797 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 856 Query: 433 VATSY 447 + SY Sbjct: 857 TSPSY 861 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 790 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 849 Query: 433 VATSY 447 + SY Sbjct: 850 TSPSY 854 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 783 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 842 Query: 433 VATSY 447 + SY Sbjct: 843 TSPSY 847 Score = 33.9 bits (76), Expect = 0.20 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 734 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSP 793 Query: 433 VATSY 447 + SY Sbjct: 794 TSPSY 798 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 818 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSP 877 Query: 433 VATSY 447 + SY Sbjct: 878 SSPSY 882 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 811 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSP 870 Query: 433 VATSY 447 + SY Sbjct: 871 SSPSY 875 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 804 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 863 Query: 433 VATSY 447 + SY Sbjct: 864 SSPSY 868 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 769 SYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 828 Query: 433 VATSY 447 + SY Sbjct: 829 TSPSY 833 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 762 SYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 821 Query: 433 VATSY 447 + SY Sbjct: 822 TSPSY 826 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 755 SYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 814 Query: 433 VATSY 447 + SY Sbjct: 815 TSPSY 819 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 741 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSP 800 Query: 433 VATSY 447 + SY Sbjct: 801 TSPSY 805 Score = 33.1 bits (74), Expect = 0.35 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 748 SYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 807 Query: 433 VATSY 447 + SY Sbjct: 808 TSPSY 812 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/64 (26%), Positives = 22/64 (34%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 777 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 836 Query: 436 ATSY 447 + SY Sbjct: 837 SPSY 840 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/65 (24%), Positives = 22/65 (33%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y +P Y P Y Sbjct: 727 TYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPFYSPTSPSYSP 786 Query: 433 VATSY 447 + SY Sbjct: 787 TSPSY 791 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/58 (25%), Positives = 20/58 (34%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRY 426 SY +P Y +P YS P YS + Y +P SY P + Sbjct: 832 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPSYSPSSPSYSPSSPTF 889
>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) (B220) Length = 1733 Score = 34.7 bits (78), Expect = 0.12 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1639 SYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSP 1698 Query: 433 VATSY 447 + SY Sbjct: 1699 TSPSY 1703 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1625 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1684 Query: 433 VATSY 447 + SY Sbjct: 1685 TSPSY 1689 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1618 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSP 1677 Query: 433 VATSY 447 + SY Sbjct: 1678 TSPSY 1682 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1604 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1663 Query: 433 VATSY 447 + SY Sbjct: 1664 TSPSY 1668 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1590 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1649 Query: 433 VATSY 447 + SY Sbjct: 1650 TSPSY 1654 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1583 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1642 Query: 433 VATSY 447 + SY Sbjct: 1643 TSPSY 1647 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1635 Query: 433 VATSY 447 + SY Sbjct: 1636 TSPSY 1640 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1569 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1628 Query: 433 VATSY 447 + SY Sbjct: 1629 TSPSY 1633 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1562 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1621 Query: 433 VATSY 447 + SY Sbjct: 1622 TSPSY 1626 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1632 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1691 Query: 433 VATSY 447 + +Y Sbjct: 1692 TSPNY 1696 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1611 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP 1670 Query: 433 VATSY 447 + SY Sbjct: 1671 TSPSY 1675 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1597 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656 Query: 433 VATSY 447 + +Y Sbjct: 1657 TSPAY 1661 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 1555 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1614 Query: 433 VATSY 447 + SY Sbjct: 1615 TSPSY 1619 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 1548 TYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1607 Query: 433 VATSY 447 + SY Sbjct: 1608 TSPSY 1612 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/65 (24%), Positives = 22/65 (33%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1646 SYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSP 1705 Query: 433 VATSY 447 + Y Sbjct: 1706 TSPGY 1710 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 268 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1546 SPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1605 Score = 31.2 bits (69), Expect = 1.3 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1653 SYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSP 1712 Query: 433 VATSY 447 + +Y Sbjct: 1713 GSPAY 1717 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/60 (25%), Positives = 21/60 (35%) Frame = +1 Query: 268 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +P + +P YS P YS + Y +P SY P Y + SY Sbjct: 1539 SPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1598
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1840 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1628 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687 Query: 433 VATSY 447 + SY Sbjct: 1688 TSPSY 1692 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1680 Query: 433 VATSY 447 + SY Sbjct: 1681 TSPSY 1685 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1673 Query: 433 VATSY 447 + SY Sbjct: 1674 TSPSY 1678 Score = 33.9 bits (76), Expect = 0.20 Identities = 17/66 (25%), Positives = 23/66 (34%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y +P Y P Y Sbjct: 1656 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1715 Query: 433 VATSYG 450 + SYG Sbjct: 1716 TSPSYG 1721 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGP 1722 Query: 433 VATSY 447 + SY Sbjct: 1723 TSPSY 1727 Score = 33.5 bits (75), Expect = 0.27 Identities = 18/64 (28%), Positives = 23/64 (35%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P Y +P YS P YS + GY +P SY P Y Sbjct: 1559 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1618 Query: 436 ATSY 447 + SY Sbjct: 1619 SPSY 1622 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1635 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694 Query: 433 VATSY 447 + +Y Sbjct: 1695 TSPAY 1699 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1666 Query: 433 VATSY 447 + SY Sbjct: 1667 TSPSY 1671 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1659 Query: 433 VATSY 447 + SY Sbjct: 1660 TSPSY 1664 Score = 33.1 bits (74), Expect = 0.35 Identities = 22/88 (25%), Positives = 31/88 (35%) Frame = +1 Query: 184 TPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRX 363 +P SD + S + S Y +P Y +P YS P YS + GY +P Sbjct: 1521 SPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1580 Query: 364 XXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +Y P Y + SY Sbjct: 1581 SPSSPGYSPTSPAYSPTSPSYSPTSPSY 1608 Score = 32.7 bits (73), Expect = 0.45 Identities = 23/84 (27%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Frame = +1 Query: 211 SVTEDGHS----TYK-SCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXX 375 S T G+S TY S Y +P Y +P YS P YS + Y +P Sbjct: 1567 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1626 Query: 376 XXXXXXXXSYDMFVPRYDMVATSY 447 SY P Y + +Y Sbjct: 1627 PSYSPTSPSYSPTSPAYSPTSPAY 1650 Score = 32.0 bits (71), Expect = 0.78 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y+ Sbjct: 1670 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNP 1729 Query: 433 VATSY 447 + Y Sbjct: 1730 QSAKY 1734 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/65 (24%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1649 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1708 Query: 433 VATSY 447 + SY Sbjct: 1709 TSPSY 1713 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/65 (24%), Positives = 22/65 (33%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 1642 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1701 Query: 433 VATSY 447 + Y Sbjct: 1702 TSPGY 1706 Score = 31.6 bits (70), Expect = 1.0 Identities = 21/79 (26%), Positives = 27/79 (34%) Frame = +1 Query: 211 SVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXX 390 S T G+S Y +P Y +P YS P YS + Y +P Sbjct: 1553 SPTSPGYSPTSP--GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP 1610 Query: 391 XXXSYDMFVPRYDMVATSY 447 SY P Y + SY Sbjct: 1611 TSPSYSPTSPSYSPTSPSY 1629 Score = 30.8 bits (68), Expect = 1.7 Identities = 15/65 (23%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y +P +Y P Y Sbjct: 1593 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1652 Query: 433 VATSY 447 + +Y Sbjct: 1653 TSPAY 1657 Score = 30.8 bits (68), Expect = 1.7 Identities = 17/64 (26%), Positives = 22/64 (34%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMV 435 Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 1552 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1611 Query: 436 ATSY 447 + SY Sbjct: 1612 SPSY 1615
>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| (RNA polymerase II subunit 1) Length = 1745 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1649 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1708 Query: 433 VATSY 447 + SY Sbjct: 1709 TSPSY 1713 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1642 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1701 Query: 433 VATSY 447 + SY Sbjct: 1702 TSPSY 1706 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1635 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1694 Query: 433 VATSY 447 + SY Sbjct: 1695 TSPSY 1699 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1628 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1687 Query: 433 VATSY 447 + SY Sbjct: 1688 TSPSY 1692 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1621 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1680 Query: 433 VATSY 447 + SY Sbjct: 1681 TSPSY 1685 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1673 Query: 433 VATSY 447 + SY Sbjct: 1674 TSPSY 1678 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1607 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1666 Query: 433 VATSY 447 + SY Sbjct: 1667 TSPSY 1671 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1600 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1659 Query: 433 VATSY 447 + SY Sbjct: 1660 TSPSY 1664 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1593 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1652 Query: 433 VATSY 447 + SY Sbjct: 1653 TSPSY 1657 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1586 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1645 Query: 433 VATSY 447 + SY Sbjct: 1646 TSPSY 1650 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1579 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1638 Query: 433 VATSY 447 + SY Sbjct: 1639 TSPSY 1643 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1572 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1631 Query: 433 VATSY 447 + SY Sbjct: 1632 TSPSY 1636 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1565 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1624 Query: 433 VATSY 447 + SY Sbjct: 1625 TSPSY 1629 Score = 34.3 bits (77), Expect = 0.16 Identities = 18/65 (27%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1558 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1617 Query: 433 VATSY 447 + SY Sbjct: 1618 TSPSY 1622 Score = 33.9 bits (76), Expect = 0.20 Identities = 18/65 (27%), Positives = 24/65 (36%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P+Y Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSP 1722 Query: 433 VATSY 447 + SY Sbjct: 1723 RSPSY 1727 Score = 33.1 bits (74), Expect = 0.35 Identities = 17/65 (26%), Positives = 23/65 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 +Y +P Y +P YS P YS + Y +P SY P Y Sbjct: 1551 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1610 Query: 433 VATSY 447 + SY Sbjct: 1611 TSPSY 1615 Score = 32.7 bits (73), Expect = 0.45 Identities = 17/65 (26%), Positives = 22/65 (33%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDM 432 SY +P Y +P YS P YS + Y +P SY P Y Sbjct: 1656 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1715 Query: 433 VATSY 447 + Y Sbjct: 1716 TSPQY 1720 Score = 31.6 bits (70), Expect = 1.0 Identities = 16/60 (26%), Positives = 21/60 (35%) Frame = +1 Query: 268 APRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVATSY 447 +P Y +P YS P YS + Y +P SY P Y + SY Sbjct: 1549 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1608 Score = 30.8 bits (68), Expect = 1.7 Identities = 16/63 (25%), Positives = 22/63 (34%) Frame = +1 Query: 259 DFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYDMVA 438 D +P + +P YS P YS + Y +P SY P Y + Sbjct: 1539 DVSSPGFSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1598 Query: 439 TSY 447 SY Sbjct: 1599 PSY 1601
>MDTL_SALTY (Q8ZKY1) Multidrug resistance protein mdtL| Length = 395 Score = 32.7 bits (73), Expect = 0.45 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = -1 Query: 398 TTTMPYPGMTIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS*EMHDL*VECPSS 219 T T+ G+T++ G S+ + A LGP +L G S LG + C SS Sbjct: 292 TNTVTLFGLTLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQ---------VCGSS 342 Query: 218 VTELTLLSEFGV-AHNHLVGPIVLCNLINI 132 + + L + G+ A N L+G ++ C++++I Sbjct: 343 LW-IWLAAILGISAMNMLIGILIGCSIVSI 371
>MDTL_SALTI (Q8Z2N9) Multidrug resistance protein mdtL| Length = 395 Score = 32.7 bits (73), Expect = 0.45 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = -1 Query: 398 TTTMPYPGMTIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS*EMHDL*VECPSS 219 T T+ G+T++ G S+ + A LGP +L G S LG + C SS Sbjct: 292 TNTVTLFGLTLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQ---------VCGSS 342 Query: 218 VTELTLLSEFGV-AHNHLVGPIVLCNLINI 132 + + L + G+ A N L+G ++ C++++I Sbjct: 343 LW-IWLAAILGISAMNMLIGILIGCSIVSI 371
>MDTL_SALCH (Q57HZ5) Multidrug resistance protein mdtL| Length = 395 Score = 32.7 bits (73), Expect = 0.45 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%) Frame = -1 Query: 398 TTTMPYPGMTIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS*EMHDL*VECPSS 219 T T+ G+T++ G S+ + A LGP +L G S LG + C SS Sbjct: 292 TNTVTLFGLTLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQ---------VCGSS 342 Query: 218 VTELTLLSEFGV-AHNHLVGPIVLCNLINI 132 + + L + G+ A N L+G ++ C++++I Sbjct: 343 LW-IWLAAILGISAMNMLIGILIGCSIVSI 371
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 31.6 bits (70), Expect = 1.0 Identities = 21/88 (23%), Positives = 33/88 (37%) Frame = +1 Query: 163 PTK*L*ATPNSDNKVSSVTEDGHSTYKSCISYDFVAPRYDMVAPRYSVVGPRYSIVASGY 342 PT ++P+ S++ G++ S +Y +P Y +P YS P YS + Y Sbjct: 1647 PTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCY 1706 Query: 343 GMETPRXXXXXXXXXXXXXSYDMFVPRY 426 +P SY P Y Sbjct: 1707 SPTSPSYSPTSPNYTPVTPSYSPTSPNY 1734 Score = 28.9 bits (63), Expect = 6.6 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 6/70 (8%) Frame = +1 Query: 256 YDFVAPRYDMVAPRYSVVGP------RYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFV 417 Y +P+Y +P YS P +YS S Y +PR Y Sbjct: 1784 YSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTS 1843 Query: 418 PRYDMVATSY 447 P Y A +Y Sbjct: 1844 PTYTPTARNY 1853 Score = 28.5 bits (62), Expect = 8.6 Identities = 17/59 (28%), Positives = 21/59 (35%) Frame = +1 Query: 253 SYDFVAPRYDMVAPRYSVVGPRYSIVASGYGMETPRXXXXXXXXXXXXXSYDMFVPRYD 429 SY +P Y V P YS P YS + Y +P +Y P YD Sbjct: 1712 SYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769
>MDTL_SHIFL (Q83PL6) Multidrug resistance protein mdtL| Length = 391 Score = 31.6 bits (70), Expect = 1.0 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Frame = -1 Query: 377 GMTIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS*EMHDL*VECPSSVTELTLL 198 G+T++ G S+ + A LGP +L G S LG + C SS+ + L Sbjct: 297 GITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQ---------VCGSSLW-IWLA 346 Query: 197 SEFGV-AHNHLVGPIVLCNLINIYSNIFL 114 + G+ A N L+G ++ C+++++ +F+ Sbjct: 347 AVVGIGAWNMLIGILIACSIVSLLLIMFV 375
>MDTL_ECOLI (P31462) Multidrug resistance protein mdtL| Length = 391 Score = 31.6 bits (70), Expect = 1.0 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Frame = -1 Query: 377 GMTIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS*EMHDL*VECPSSVTELTLL 198 G+T++ G S+ + A LGP +L G S LG + C SS+ + L Sbjct: 297 GITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQ---------VCGSSLW-IWLA 346 Query: 197 SEFGV-AHNHLVGPIVLCNLINIYSNIFL 114 + G+ A N L+G ++ C+++++ +F+ Sbjct: 347 AVVGIGAWNMLIGILIACSIVSLLLIMFV 375
>MDTL_ECOL6 (Q8FBV0) Multidrug resistance protein mdtL| Length = 391 Score = 31.6 bits (70), Expect = 1.0 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Frame = -1 Query: 377 GMTIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS*EMHDL*VECPSSVTELTLL 198 G+T++ G S+ + A LGP +L G S LG + C SS+ + L Sbjct: 297 GITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQ---------VCGSSLW-IWLA 346 Query: 197 SEFGV-AHNHLVGPIVLCNLINIYSNIFL 114 + G+ A N L+G ++ C+++++ +F+ Sbjct: 347 AVVGIGAWNMLIGILIACSIVSLLLIMFV 375
>MDTL_ECO57 (Q8XB24) Multidrug resistance protein mdtL| Length = 391 Score = 31.6 bits (70), Expect = 1.0 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%) Frame = -1 Query: 377 GMTIMYLGVSIPYPEATILYLGPTTLYLGATMSYLGATKS*EMHDL*VECPSSVTELTLL 198 G+T++ G S+ + A LGP +L G S LG + C SS+ + L Sbjct: 297 GITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIAQ---------VCGSSLW-IWLA 346 Query: 197 SEFGV-AHNHLVGPIVLCNLINIYSNIFL 114 + G+ A N L+G ++ C+++++ +F+ Sbjct: 347 AVVGISAWNMLIGILIACSIVSLLLIMFV 375
>DGKZ_HUMAN (Q13574) Diacylglycerol kinase zeta (EC 2.7.1.107) (Diglyceride| kinase zeta) (DGK-zeta) (DAG kinase zeta) Length = 1117 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 325 YCIWDQQHCIWEQPCRIWEQQSRRRCMICKWSVHLP 218 +C +Q+C+ R+ + SRR+C CK VH P Sbjct: 298 FCYVGEQYCV----ARMLKSVSRRKCAACKIVVHTP 329
>PSKR_DAUCA (Q8LPB4) Phytosulfokine receptor precursor (EC 2.7.11.1)| (Phytosulfokine LRR receptor kinase) Length = 1021 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 Query: 227 PSSVTELTLLSEFGVAHNHLVGPI 156 P S+ +L+ LS F VA+N L GPI Sbjct: 598 PPSLVKLSFLSTFSVAYNKLSGPI 621
>MASP2_RAT (Q9JJS8) Mannan-binding lectin serine protease 2 precursor (EC| 3.4.21.104) (Mannose-binding protein-associated serine protease 2) (MASP-2) (MBL-associated serine protease 2) [Contains: Mannan-binding lectin serine protease 2 A chain; Mannan-bin Length = 685 Score = 29.3 bits (64), Expect = 5.0 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%) Frame = +3 Query: 363 HYCHSRIR--HCCCQLRYVCPQIRHGCYQL 446 HYCH+ + +C C++ Y+ Q +H C L Sbjct: 154 HYCHNYLGGYYCSCRVGYILHQNKHTCSAL 183
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 28.9 bits (63), Expect = 6.6 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -1 Query: 227 PSSVTELTLLSEFGVAHNHLVGPI 156 PSSVTE+T L ++HNH G I Sbjct: 422 PSSVTEMTKLQILNLSHNHFDGYI 445
>MASP2_MOUSE (Q91WP0) Mannan-binding lectin serine protease 2 precursor (EC| 3.4.21.104) (Mannose-binding protein-associated serine protease 2) (MASP-2) (MBL-associated serine protease 2) [Contains: Mannan-binding lectin serine protease 2 A chain; Mannan-b Length = 685 Score = 28.9 bits (63), Expect = 6.6 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%) Frame = +3 Query: 363 HYCHSRIR--HCCCQLRYVCPQIRHGCYQL 446 HYCH+ + +C C+ YV Q +H C L Sbjct: 154 HYCHNYLGGYYCSCRAGYVLHQNKHTCSAL 183 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,831,267 Number of Sequences: 219361 Number of extensions: 1240698 Number of successful extensions: 3367 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2874 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3217 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
