ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane ... 49 7e-06
2PIP1_ATRCA (P42767) Aquaporin PIP-type 49 7e-06
3PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane ... 47 3e-05
4PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic... 47 3e-05
5PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane ... 41 0.001
6PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane ... 40 0.002
7PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane ... 38 0.013
8PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane ... 36 0.038
9PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic... 34 0.14
10PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic... 34 0.14
11PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic... 34 0.14
12PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane ... 33 0.25
13PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane ... 33 0.25
14PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane ... 32 0.55
15SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4 31 1.6
16SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4 31 1.6
17SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4 30 2.1
18PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane ... 30 2.7
19UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-reco... 30 3.5
20PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic... 30 3.5
21PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic... 29 4.6
22PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic... 29 6.0
23CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-... 29 6.0
24SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4 28 7.9
25TELT_MOUSE (O70548) Telethonin (Titin cap protein) 28 7.9

>PIP26_ORYSA (Q7XLR1) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2.6) (OsPIP2.6)
          Length = 282

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           F+GALAAAAYHQYILRAAAIKALG
Sbjct: 251 FIGALAAAAYHQYILRAAAIKALG 274



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>PIP1_ATRCA (P42767) Aquaporin PIP-type|
          Length = 282

 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 23/24 (95%), Positives = 24/24 (100%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           FVGALAAAAYHQY+LRAAAIKALG
Sbjct: 251 FVGALAAAAYHQYVLRAAAIKALG 274



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>PIP28_ARATH (Q9ZVX8) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 3b) (PIP3b)
          Length = 278

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKAL 377
           FVGALAAAAYHQYILRAAAIKAL
Sbjct: 247 FVGALAAAAYHQYILRAAAIKAL 269



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>PIP27_ARATH (P93004) Aquaporin PIP2.7 (Plasma membrane intrinsic protein 3)|
           (Salt stress-induced major intrinsic protein)
          Length = 280

 Score = 46.6 bits (109), Expect = 3e-05
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           F+GALAAAAYHQYILRA+AIKALG
Sbjct: 249 FLGALAAAAYHQYILRASAIKALG 272



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>PIP21_ORYSA (Q8H5N9) Probable aquaporin PIP2.1 (Plasma membrane intrinsic|
           protein 2a) (PIP2a) (OsPIP2.1)
          Length = 290

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 20/24 (83%), Positives = 20/24 (83%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           FVGA  AA YHQYILRA AIKALG
Sbjct: 261 FVGAAIAAFYHQYILRAGAIKALG 284



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>PIP24_ARATH (Q9FF53) Probable aquaporin PIP2.4 (Plasma membrane intrinsic|
           protein 2.4)
          Length = 291

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = -3

Query: 442 VGALAAAAYHQYILRAAAIKALG 374
           +GA AAA YHQ+ILRAAAIKALG
Sbjct: 257 IGAAAAAFYHQFILRAAAIKALG 279



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>PIP25_ARATH (Q9SV31) Probable aquaporin PIP2.5 (Plasma membrane intrinsic|
           protein 2d) (PIP2d)
          Length = 286

 Score = 37.7 bits (86), Expect = 0.013
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           F GA  AA YHQ++LRA AIKALG
Sbjct: 255 FAGAAIAAFYHQFVLRAGAIKALG 278



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>PIP26_ARATH (Q9ZV07) Probable aquaporin PIP2.6 (Plasma membrane intrinsic|
           protein 2e) (PIP2e)
          Length = 289

 Score = 36.2 bits (82), Expect = 0.038
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           FVGA  AA YHQ++LRA A+KA G
Sbjct: 255 FVGAAIAAFYHQFVLRAGAMKAYG 278



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>PIP23_ARATH (P30302) Aquaporin PIP2.3 (Plasma membrane intrinsic protein 2c)|
           (PIP2c) (TMP2C) (RD28-PIP) (Water stress-induced
           tonoplast intrinsic protein) (WSI-TIP)
          Length = 285

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           F+GA  AA YHQ++LRA+  K+LG
Sbjct: 254 FIGATIAAFYHQFVLRASGSKSLG 277



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>PIP22_ARATH (P43287) Aquaporin PIP2.2 (Plasma membrane intrinsic protein 2b)|
           (PIP2b) (TMP2b)
          Length = 285

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           F+GA  AA YHQ++LRA+  K+LG
Sbjct: 254 FIGAAIAAFYHQFVLRASGSKSLG 277



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>PIP21_ARATH (P43286) Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a)|
           (PIP2a)
          Length = 287

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKALG 374
           F+GA  AA YHQ++LRA+  K+LG
Sbjct: 256 FIGAAIAAFYHQFVLRASGSKSLG 279



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>PIP23_ORYSA (Q7XUA6) Probable aquaporin PIP2.3 (Plasma membrane intrinsic|
           protein 2.3) (OsPIP2.3)
          Length = 290

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -3

Query: 442 VGALAAAAYHQYILRAAAIK 383
           +GA  AAAYHQY+LRA+A K
Sbjct: 262 IGAAIAAAYHQYVLRASAAK 281



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>PIP22_ORYSA (Q6K215) Probable aquaporin PIP2.2 (Plasma membrane intrinsic|
           protein 2.2) (OsPIP2.2)
          Length = 288

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = -3

Query: 442 VGALAAAAYHQYILRAAAIK 383
           +GA  AAAYHQY+LRA+A K
Sbjct: 261 IGAAIAAAYHQYVLRASAAK 280



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>PIP28_ORYSA (Q7Y1E6) Probable aquaporin PIP2.8 (Plasma membrane intrinsic|
           protein 2.8) (OsPIP2.8)
          Length = 280

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKA 380
           F GA AA  YH YILR AA KA
Sbjct: 248 FAGAAAAMIYHHYILRGAAAKA 269



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>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C GCS
Sbjct: 295 YCHRCLKHTLATVPCDGCS 313



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>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCH C+K L   + C GCS
Sbjct: 294 YCHHCLKQLLASIPCCGCS 312



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>PIP27_ORYSA (Q651D5) Probable aquaporin PIP2.7 (Plasma membrane intrinsic|
           protein 2.7) (OsPIP2.7)
          Length = 290

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -3

Query: 442 VGALAAAAYHQYILRAAAIKAL 377
           +GA  AAAYH+ +LR  A KAL
Sbjct: 259 IGAFLAAAYHKLVLRGEAAKAL 280



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>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 368  PEQPEQLSTPANNLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 222
            P +P+   TP + L+      S  P+ A  PH  T F   V L + A P
Sbjct: 1560 PPRPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608



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>PIP24_ORYSA (Q8GRT8) Aquaporin PIP2.4 (Plasma membrane intrinsic protein 2.4)|
           (OsPIP2.4)
          Length = 286

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAA 389
           F+GA  AA YHQ ILRA+A
Sbjct: 258 FIGAAIAALYHQVILRASA 276



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>PIP25_ORYSA (Q8GRI8) Aquaporin PIP2.5 (Plasma membrane intrinsic protein 2.5)|
           (OsPIP2.5)
          Length = 283

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAA 389
           F+GA  AA YHQ +LRA+A
Sbjct: 255 FIGAAIAALYHQIVLRASA 273



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>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1)
          Length = 289

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 445 FVGALAAAAYHQYILRAAAIKA 380
           FVGA  AA YHQ I+RA   K+
Sbjct: 266 FVGAALAAIYHQVIIRAIPFKS 287



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>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 170 WWPLSLSLTCMHRH*TRPDGHD 235
           WWP  L+L+ +H+H  + + HD
Sbjct: 31  WWPNQLNLSILHQHDRKTNPHD 52



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>SMYD4_MOUSE (Q8BTK5) SET and MYND domain-containing protein 4|
          Length = 799

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 310 YCHRCIKLLAGVLSCSGCS 366
           YCHRC+K     + C  CS
Sbjct: 295 YCHRCLKHTLATVPCGSCS 313



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>TELT_MOUSE (O70548) Telethonin (Titin cap protein)|
          Length = 167

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 205 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 321
           Q   EA WA W+  T +T+P   C     D    +  HR
Sbjct: 15  QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,913,392
Number of Sequences: 219361
Number of extensions: 1039152
Number of successful extensions: 2644
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2643
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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