Clone Name | rbart37f05 |
---|---|
Clone Library Name | barley_pub |
>NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuclease S1)| (Single-stranded-nucleate endonuclease) (Deoxyribonuclease S1) Length = 287 Score = 53.1 bits (126), Expect = 4e-07 Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%) Frame = -3 Query: 475 TELHHIWDVNIIQTAEKDYYDEDAGKFVDALNKSIK-GAWLDKVQEWEE--CAKNQTACS 305 T LHHIWD N+ + A Y A + D L + IK G + K W + K+ + S Sbjct: 165 TNLHHIWDTNMPEEAAGGYSLSVAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTS 224 Query: 304 DIYGSESIAAACDS------AYKNVTEGSTLGDEYFGSRLPVVKLRLAQGGVRLAATLNR 143 I+ +++ C + AY N T+ L EY+ PV + +A+ G RLAA L+ Sbjct: 225 MIWAADANTYVCSTVLDDGLAYINSTD---LSGEYYDKSQPVFEELIAKAGYRLAAWLDL 281 Query: 142 I 140 I Sbjct: 282 I 282
>NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)| (Deoxyribonuclease PA3) Length = 270 Score = 33.1 bits (74), Expect = 0.42 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Frame = -3 Query: 469 LHHIWDVNIIQTAEKDYYDEDAGKFVDALNKSIK-GAWLDKVQEW--EECAKNQTACSDI 299 LH WD + Q + DA + L ++I+ G + + W + + Sbjct: 148 LHSDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQATGWIKGDNISEPITTATR 207 Query: 298 YGSESIAAACDSAYKNVTEGSTLGD---EYFGSRLPVVKLRLAQGGVRLAATLNRIFG 134 + S++ A C + GD Y+ S + ++L++A+GG RLA +N I G Sbjct: 208 WASDANALVCTVVMPHGAAALQTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265
>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn| syndrome candidate 2 protein) Length = 549 Score = 33.1 bits (74), Expect = 0.42 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%) Frame = +1 Query: 181 PAST*PPAACFRNTHRPASNPLSRSCTPSRMLQRCSPTH---ICPSTPSGSWRTPPIPAL 351 P+S PPA R RP P + S T ++ +P + + P+TP+ + T P L Sbjct: 360 PSSETPPAPSSREASRPPEEPSAPSPTLPAQFKQRAPMYNSGLSPATPTPAAPTSP---L 416 Query: 352 CLTTPPLCSCST 387 TTPP + +T Sbjct: 417 TPTTPPAVAPTT 428
>NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1)| (Deoxyribonuclease P1) Length = 270 Score = 32.3 bits (72), Expect = 0.71 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Frame = -3 Query: 469 LHHIWDVNIIQTAEKDYYDEDAGKFVDALNKSIK-GAWLDKVQEW--EECAKNQTACSDI 299 LH WD + Q + DA + L ++I+ G + + W + + Sbjct: 148 LHSDWDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATR 207 Query: 298 YGSESIAAACDSAYKNVTEGSTLGD---EYFGSRLPVVKLRLAQGGVRLAATLNRIFG 134 + S++ A C + GD Y+ S + ++L++A+GG RLA +N I G Sbjct: 208 WASDANALVCTVVMPHGAAALQTGDLYPTYYDSVIDTIELQIAKGGYRLANWINEIHG 265
>UL110_HCMVA (P16830) Hypothetical protein UL110| Length = 127 Score = 32.3 bits (72), Expect = 0.71 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +1 Query: 223 HRPASNPLSRSCT-PSRMLQRCSPTHIC--PSTPSGSWRTPPIPALCLTTP 366 HR N S+ T P +LQR T++C PS SG W +PP+P + P Sbjct: 13 HRTGYNQASKQQTAPPCLLQRTVTTYVCRLPSR-SGFWGSPPLPIIFSFVP 62
>ANTR1_MOUSE (Q9CZ52) Anthrax toxin receptor 1 precursor (Tumor endothelial| marker 8) Length = 562 Score = 32.0 bits (71), Expect = 0.93 Identities = 20/51 (39%), Positives = 24/51 (47%) Frame = +1 Query: 217 NTHRPASNPLSRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTPP 369 NT+ P+S P + TP C P PS P TPPIP+ T PP Sbjct: 497 NTYHPSSPPPAPIYTPPPPAPHCPPP--APSAP-----TPPIPSPPSTLPP 540
>MANC7_ECOLI (P37741) Mannose-1-phosphate guanylyltransferase [GDP] (EC| 2.7.7.22) (GDP-mannose pyrophosphorylase) (GMP) Length = 464 Score = 32.0 bits (71), Expect = 0.93 Identities = 23/75 (30%), Positives = 36/75 (48%) Frame = +3 Query: 42 NTHSPGIICANLQKSLAVYKTRHDNH*GLDSPNILLSVAANRTPPCASLNLTTGSLLPKY 221 NT SP +IC L + + + RH N LD+ NI+L + T P + +L+ K Sbjct: 51 NTSSPVVICNELHRFIVAEQLRHLNK--LDN-NIILEPSGRNTAPA----ICIAALILKM 103 Query: 222 SSPSVEPSVTFLYAE 266 P+ P + L A+ Sbjct: 104 KHPNENPLMLVLPAD 118
>NELFA_MOUSE (Q8BG30) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn| syndrome candidate 2 homolog) (mWHSC2) Length = 530 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%) Frame = +1 Query: 181 PAST*PPAACFRNTHRPASNPLSRSCTPSRMLQRCSPTH---ICPSTPSGSWRTPPIPAL 351 P+S PPA R RP P + S T ++ +P + + P+TP+ + T P L Sbjct: 339 PSSETPPAPPSREASRPPEEPSAPSPTLPTQFKQRAPMYNSGLSPATPAPAAPTSP---L 395 Query: 352 CLTTPP 369 TTPP Sbjct: 396 TPTTPP 401
>AMPH_RAT (O08838) Amphiphysin| Length = 683 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%) Frame = +1 Query: 235 SNPL-SRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTP 366 ++PL S + +P+ L SP + P +PS + + PP+P L TP Sbjct: 267 ASPLPSPTASPNHTLAPASPAPVRPRSPSQTRKGPPVPPLPKVTP 311
>AMPH_MOUSE (Q7TQF7) Amphiphysin| Length = 686 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = +1 Query: 247 SRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTP 366 S + +P+ L SP + P +PS + + PP+P L TP Sbjct: 272 SPTASPNHTLAPASPAPVRPRSPSQTRKGPPVPPLPKVTP 311
>NRT2_CHICK (P55807) NAD(P)(+)--arginine ADP-ribosyltransferase 2 precursor (EC| 2.4.2.31) (Mono(ADP-ribosyl)transferase 2) (AT2) Length = 312 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = -1 Query: 186 GWRKAASDWQLRSTGYLVNP 127 GWRKAA++WQ R GYL +P Sbjct: 76 GWRKAAAEWQKR-WGYLAHP 94
>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,| muscle-specific form (Alpha-NAC, muscle-specific form) Length = 2187 Score = 30.4 bits (67), Expect = 2.7 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Frame = +1 Query: 199 PAACFRNTHRPASNPLSRSCTPSRMLQRCSPTHICPSTPSG--SWRTPPIPALCLTTP 366 P +C TH NP + S P+ TH+ P T SG S + P P L P Sbjct: 401 PVSCIGATHHALDNPSAISVAPA--------THVPPPTSSGLVSSKDPASPVTSLVVP 450
>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal| transduction protein CBL) (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) Length = 913 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +1 Query: 226 RPASNPLSRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTP 366 RP PL CTP R + S P SW + PIP + + TP Sbjct: 557 RPQRRPLP--CTPGDCPSRDKLPPVPSSRPGDSWLSRPIPKVPVATP 601
>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB| Length = 142 Score = 30.0 bits (66), Expect = 3.5 Identities = 27/76 (35%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Frame = +1 Query: 169 RRLAP----AST*PPAACFRNTHRPASNPLSRSCTPSRMLQRCSPTHICPSTPSGSWRTP 336 R+ AP AST PA ++ R SRS SR + CS C +P GS P Sbjct: 71 RKAAPCSRKASTGSPARSSGSSRR------SRSSGCSRSSRSCS----CWRSPCGSRCAP 120 Query: 337 PIPALCLTTPPLCSCS 384 P P T+ SCS Sbjct: 121 PAPRATATSAVTASCS 136
>SYI_PSEAE (Q9HVM4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 943 Score = 29.6 bits (65), Expect = 4.6 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = +3 Query: 270 HAAAMLSDPYMS---EHAVWFLAHSSHSCTLSNHAPFMLL 380 HA+ ++D Y+ +H WF + C + NHAP+ L Sbjct: 556 HASGPVADLYLEGSDQHRGWFHSSLLTGCAIDNHAPYRQL 595
>KCAB3_XENLA (Q9PTM4) Voltage-gated potassium channel beta-3 subunit (K(+)| channel beta-3 subunit) (Kv-beta-3) Length = 401 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +1 Query: 244 LSRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTPPL 372 +S +CT + R S +CPS PSG + TPP+ Sbjct: 3 VSFACTEQTLRSRTSEDRLCPSRPSGGQNGVSMAQTKQRTPPM 45
>THII_AERPE (Q9YEW8) Probable thiamine biosynthesis protein thiI| Length = 412 Score = 29.6 bits (65), Expect = 4.6 Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Frame = -3 Query: 394 VDALNKSIKGAWLDKVQEWEECAKNQTACSDIYGSESIAAACDSAYKNVTEGSTLGDEYF 215 V+A + ++G L +++ + A A + ++G +S++ A + Y + + + E+F Sbjct: 57 VEAEVERLQGRVLVRLRSPGDAAAAARASARVFGVKSVSPAVEVEYSGIEDLAEKAAEFF 116 Query: 214 GSRL--PVVKLRLAQGGV 167 G R+ V ++R + GV Sbjct: 117 GERVRGRVFRVRARRSGV 134
>AMPH_HUMAN (P49418) Amphiphysin| Length = 695 Score = 29.6 bits (65), Expect = 4.6 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 247 SRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTP 366 S + +P+ L SP P +PS + + PP+P L TP Sbjct: 272 SPTASPNHTLAPASPAPARPRSPSQTRKGPPVPPLPKVTP 311
>GP179_HUMAN (Q6PRD1) Probable G-protein coupled receptor 179 precursor (Probable| G-protein coupled receptor 158-like 1) Length = 2367 Score = 29.3 bits (64), Expect = 6.0 Identities = 21/85 (24%), Positives = 41/85 (48%) Frame = +3 Query: 54 PGIICANLQKSLAVYKTRHDNH*GLDSPNILLSVAANRTPPCASLNLTTGSLLPKYSSPS 233 P ++ + L++ LA +R ++ ++ P L +A+ + NLT G LP+ S Sbjct: 783 PPLLDSLLRRKLAKKASRTESRESVEGPPALGFRSAS------AHNLTVGERLPRARPAS 836 Query: 234 VEPSVTFLYAESHAAAMLSDPYMSE 308 ++ S++ + A M S Y+ E Sbjct: 837 LQKSLSVASSREKALLMASQAYLEE 861
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 29.3 bits (64), Expect = 6.0 Identities = 15/50 (30%), Positives = 22/50 (44%) Frame = +1 Query: 220 THRPASNPLSRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTPP 369 T+ +P + S P R + P H P TP+ ++ PP P PP Sbjct: 526 TYGQPPSPPTFSPPPPRQIHSPPPPHWQPRTPTPTYGQPPSPPTFSAPPP 575
>PLXB3_HUMAN (Q9ULL4) Plexin-B3 precursor| Length = 1909 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +1 Query: 247 SRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTPP 369 SR C P L R S +C ++P+ + T P+ + PP Sbjct: 875 SRPCNPEPSLYRTSARIVCVTSPAPNGTTGPVRVAIKSQPP 915
>JAD1D_MOUSE (Q62240) Jumonji/ARID domain-containing protein 1D (SmcY protein)| (Histocompatibility Y antigen) (H-Y) Length = 1548 Score = 29.3 bits (64), Expect = 6.0 Identities = 10/31 (32%), Positives = 21/31 (67%) Frame = +1 Query: 52 RQASSVPIYKNHLQSIKPDMIITKAWIHQIS 144 R+A ++P+Y ++QS+K + +AWI ++ Sbjct: 1003 REAENIPVYLPNIQSLKEALTKAQAWIADVN 1033
>SYFB_BACHK (Q6HCW8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 6.0 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Frame = -3 Query: 487 YRRKTELHHIWDVNIIQTAEKDYYDEDAGKFVDALNKSIKGAWLDKVQEWE---ECAKNQ 317 YR E I DV + A+K + V+ LNK +KG + V E E E K Sbjct: 5 YRWLQEYVDIKDVTAQELADKITKSGIEVEGVEVLNKGVKGVVVGHVLECEKHPEADKLS 64 Query: 316 TACSDIYGSESIAAACDSAYKNVTEGSTLGDEYFGSRLP 200 DI E + C +A N+ +G + G+ LP Sbjct: 65 KCLIDIGEEEPVQIICGAA--NIAKGLKVPVAKVGAVLP 101
>SYFB_BACCZ (Q633N5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 6.0 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Frame = -3 Query: 487 YRRKTELHHIWDVNIIQTAEKDYYDEDAGKFVDALNKSIKGAWLDKVQEWE---ECAKNQ 317 YR E I DV + A+K + V+ LNK +KG + V E E E K Sbjct: 5 YRWLQEYVDIKDVTAQELADKITKSGIEVEGVEVLNKGVKGVVVGHVLECEKHPEADKLS 64 Query: 316 TACSDIYGSESIAAACDSAYKNVTEGSTLGDEYFGSRLP 200 DI E + C +A N+ +G + G+ LP Sbjct: 65 KCLIDIGEEEPVQIICGAA--NIAKGLKVPVAKVGAVLP 101
>SYFB_BACCR (Q817I7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 6.0 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Frame = -3 Query: 487 YRRKTELHHIWDVNIIQTAEKDYYDEDAGKFVDALNKSIKGAWLDKVQEWE---ECAKNQ 317 YR E I DV + A+K + V+ LNK +KG + V E E E K Sbjct: 5 YRWLQEYVDIKDVTAQELADKITKSGIEVEGVEVLNKGVKGVVVGHVLECEKHPEADKLS 64 Query: 316 TACSDIYGSESIAAACDSAYKNVTEGSTLGDEYFGSRLP 200 DI E + C +A N+ +G + G+ LP Sbjct: 65 KCLIDIGEEEPVQIICGAA--NIAKGLKVPVAKVGAVLP 101
>SYFB_BACC1 (Q72ZI2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 6.0 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Frame = -3 Query: 487 YRRKTELHHIWDVNIIQTAEKDYYDEDAGKFVDALNKSIKGAWLDKVQEWE---ECAKNQ 317 YR E I DV + A+K + V+ LNK +KG + V E E E K Sbjct: 5 YRWLQEYVDIKDVTAQELADKITKSGIEVEGVEVLNKGVKGVVVGHVLECEKHPEADKLS 64 Query: 316 TACSDIYGSESIAAACDSAYKNVTEGSTLGDEYFGSRLP 200 DI E + C +A N+ +G + G+ LP Sbjct: 65 KCLIDIGEEEPVQIICGAA--NIAKGLKVPVAKVGAVLP 101
>SYFB_BACAN (Q81L31) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 6.0 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Frame = -3 Query: 487 YRRKTELHHIWDVNIIQTAEKDYYDEDAGKFVDALNKSIKGAWLDKVQEWE---ECAKNQ 317 YR E I DV + A+K + V+ LNK +KG + V E E E K Sbjct: 5 YRWLQEYVDIKDVTAQELADKITKSGIEVEGVEVLNKGVKGVVVGHVLECEKHPEADKLS 64 Query: 316 TACSDIYGSESIAAACDSAYKNVTEGSTLGDEYFGSRLP 200 DI E + C +A N+ +G + G+ LP Sbjct: 65 KCLIDIGEEEPVQIICGAA--NIAKGLKVPVAKVGAVLP 101
>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1840 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/59 (35%), Positives = 30/59 (50%) Frame = +1 Query: 160 PIGRRLAPAST*PPAACFRNTHRPASNPLSRSCTPSRMLQRCSPTHICPSTPSGSWRTP 336 P RL+PAS P + + P+ +P S S +PS SPT+ PS+P S +P Sbjct: 1742 PSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPS------SPTY-SPSSPYSSGASP 1793
>ZFP26_MOUSE (P10076) Zinc finger protein 26 (Zfp-26) (mKR3 protein) (Fragment)| Length = 428 Score = 28.9 bits (63), Expect = 7.8 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = -3 Query: 442 IQTAEKDYYDEDAGKFV---DALNKSIKGAWLDKVQEWEECAKNQTACSD 302 I T EK Y + GK LNK ++ +K E++EC +N T +D Sbjct: 367 IHTGEKPYVCQYCGKAFTEHSGLNKHLRKHTGEKPYEYKECGENFTTSAD 416
>VAX2_MOUSE (Q9WTP9) Ventral anterior homeobox 2 (Ventral retina homeodomain| protein) Length = 292 Score = 28.9 bits (63), Expect = 7.8 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 229 PASNPLSRSCTPSRMLQRCSPTHICPSTPSGSWRTPPIPALCLTTPPL 372 PAS+ + P R +P PS + S PP+PA+C ++ PL Sbjct: 211 PASHRGTSLVDPRNSSPRLNPM---PSASASSPLPPPLPAICFSSAPL 255 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,388,178 Number of Sequences: 219361 Number of extensions: 1508679 Number of successful extensions: 5223 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4979 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5208 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)