ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOS2_CHICK (Q90703) Nitric oxide synthase, inducible (EC 1.14.13... 30 2.3
2DPOL_BPML5 (Q05254) DNA polymerase (EC 2.7.7.7) 29 3.9
3ALF_SHIFL (P0AB73) Fructose-bisphosphate aldolase class 2 (EC 4.... 28 6.6
4ALF_ECOLI (P0AB71) Fructose-bisphosphate aldolase class 2 (EC 4.... 28 6.6
5ALF_ECO57 (P0AB72) Fructose-bisphosphate aldolase class 2 (EC 4.... 28 6.6

>NOS2_CHICK (Q90703) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type|
            II) (Inducible NO synthase) (Inducible NOS) (iNOS)
            (Macrophage NOS)
          Length = 1136

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 165  NECPPCLCERNDGYVPPK--LAPILVLGDMSLIRPYEPFW 52
            NE  PC     DG+  PK    P +++G  + I P+  FW
Sbjct: 951  NETVPCFVRSADGFRLPKEPAKPCILIGPGTGIAPFRSFW 990



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>DPOL_BPML5 (Q05254) DNA polymerase (EC 2.7.7.7)|
          Length = 595

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 3   GAKLVLRFIRVRTITQSKRVHTAESGTYPQGPKLERVLGVHIRRSVHI 146
           GAK +   + + +I  +KRVH A S TYP   +L + L +   R+ +I
Sbjct: 446 GAKALAEAVGI-SIPVAKRVHEAFSATYPGVERLSKKLAMEAGRNGYI 492



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>ALF_SHIFL (P0AB73) Fructose-bisphosphate aldolase class 2 (EC 4.1.2.13)|
           (Fructose-bisphosphate aldolase class II) (FBP aldolase)
          Length = 358

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 62  SYGRIRDISPRTKIGASFGGTYPSFRSHKHGGHSLFPQILRAS 190
           +Y  +  ISPR  I ASFG  +  +   K G   L P ILR S
Sbjct: 205 AYTELSKISPRFTIAASFGNVHGVY---KPGNVVLTPTILRDS 244



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>ALF_ECOLI (P0AB71) Fructose-bisphosphate aldolase class 2 (EC 4.1.2.13)|
           (Fructose-bisphosphate aldolase class II) (FBP aldolase)
          Length = 358

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 62  SYGRIRDISPRTKIGASFGGTYPSFRSHKHGGHSLFPQILRAS 190
           +Y  +  ISPR  I ASFG  +  +   K G   L P ILR S
Sbjct: 205 AYTELSKISPRFTIAASFGNVHGVY---KPGNVVLTPTILRDS 244



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>ALF_ECO57 (P0AB72) Fructose-bisphosphate aldolase class 2 (EC 4.1.2.13)|
           (Fructose-bisphosphate aldolase class II) (FBP aldolase)
          Length = 358

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = +2

Query: 62  SYGRIRDISPRTKIGASFGGTYPSFRSHKHGGHSLFPQILRAS 190
           +Y  +  ISPR  I ASFG  +  +   K G   L P ILR S
Sbjct: 205 AYTELSKISPRFTIAASFGNVHGVY---KPGNVVLTPTILRDS 244


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,987,466
Number of Sequences: 219361
Number of extensions: 614459
Number of successful extensions: 1894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1894
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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