ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY335488.1| Oryza sativa (japonica cultivar-group) enolase (E... 48 0.010
2gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.010
3gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.010
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.010
5dbj|AK073662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.010
6gb|U09450.1|OSU09450 Oryza sativa enolase mRNA, complete cds 48 0.010
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 48 0.010
8gb|AC114045.5| Rattus norvegicus 20 BAC CH230-187J1 (Children's ... 40 2.5
9gb|AF016451.1| Caenorhabditis elegans cosmid C03A7, complete seq... 40 2.5
10emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 2.5
11emb|AL663065.9| Mouse DNA sequence from clone RP23-248G11 on chr... 40 2.5
12gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone c... 40 2.5
13gb|AY483219.1| Batis maritima maturase K (matK) gene, complete c... 38 9.8
14gb|AC099726.6| Mus musculus chromosome 7, clone RP23-342H24, com... 38 9.8
15gb|AC121856.3| Mus musculus BAC clone RP24-97G6 from chromosome ... 38 9.8
16gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, comp... 38 9.8
17gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, com... 38 9.8
18emb|AL355136.19| Human DNA sequence from clone RP11-435P18 on ch... 38 9.8
19emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4,... 38 9.8
20emb|BX470196.6| Zebrafish DNA sequence from clone CH211-157J23 i... 38 9.8
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.8
22gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, com... 38 9.8
23gb|AC090523.1|AC090523 Caenorhabditis briggsae cosmid CB015N01, ... 38 9.8
24gb|AC158300.4| Mus musculus chromosome 7, clone RP24-226N16, com... 38 9.8
25gb|AC092964.8| Homo sapiens 3 BAC RP11-423E7 (Roswell Park Cance... 38 9.8
26gb|AC007388.4| Homo sapiens BAC clone RP11-395B14 from 2, comple... 38 9.8
27emb|CR855557.2| Xenopus tropicalis finished cDNA, clone TEgg027a09 38 9.8
28gb|AC121315.14| Mus musculus chromosome 3, clone RP24-488I7, com... 38 9.8
29emb|Z48585.1|CEZK673 Caenorhabditis elegans Cosmid ZK673, comple... 38 9.8

>gb|AY335488.1| Oryza sativa (japonica cultivar-group) enolase (Eno1) mRNA, complete
            cds
          Length = 1659

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 95   accaaaattggagcgagttttgggggtacatatccg 130
            |||||||||||||| ||||| |||||||||||||||
Sbjct: 1546 accaaaattggagcaagttt-gggggtacatatccg 1512



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>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0015J03, complete sequence
          Length = 165933

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                 
Query: 95    accaaaattggagcgagttttgggggtacatatccg 130
             |||||||||||||| ||||| |||||||||||||||
Sbjct: 58107 accaaaattggagcaagttt-gggggtacatatccg 58141



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>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBb0015J03, complete sequence
          Length = 135940

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 95   accaaaattggagcgagttttgggggtacatatccg 130
            |||||||||||||| ||||| |||||||||||||||
Sbjct: 1894 accaaaattggagcaagttt-gggggtacatatccg 1860



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                   
Query: 95      accaaaattggagcgagttttgggggtacatatccg 130
               |||||||||||||| ||||| |||||||||||||||
Sbjct: 4290566 accaaaattggagcaagttt-gggggtacatatccg 4290600



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>dbj|AK073662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048K07, full
            insert sequence
          Length = 1651

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 95   accaaaattggagcgagttttgggggtacatatccg 130
            |||||||||||||| ||||| |||||||||||||||
Sbjct: 1577 accaaaattggagcaagttt-gggggtacatatccg 1543



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>gb|U09450.1|OSU09450 Oryza sativa enolase mRNA, complete cds
          Length = 1687

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 95   accaaaattggagcgagttttgggggtacatatccg 130
            |||||||||||||| ||||| |||||||||||||||
Sbjct: 1608 accaaaattggagcaagttt-gggggtacatatccg 1574



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 48.1 bits (24), Expect = 0.010
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                   
Query: 95      accaaaattggagcgagttttgggggtacatatccg 130
               |||||||||||||| ||||| |||||||||||||||
Sbjct: 4291387 accaaaattggagcaagttt-gggggtacatatccg 4291421



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>gb|AC114045.5| Rattus norvegicus 20 BAC CH230-187J1 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 211095

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 150    atgggggacattcattattt 169
              ||||||||||||||||||||
Sbjct: 167279 atgggggacattcattattt 167298



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>gb|AF016451.1| Caenorhabditis elegans cosmid C03A7, complete sequence
          Length = 41609

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   ttcattatttcctcaaatcc 179
             ||||||||||||||||||||
Sbjct: 18141 ttcattatttcctcaaatcc 18160



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>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14
          Length = 306050

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 169    tcctcaaatcctacgagcttcaacaaga 196
              |||||||||||| |||||| ||||||||
Sbjct: 276887 tcctcaaatccttcgagctgcaacaaga 276914



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>emb|AL663065.9| Mouse DNA sequence from clone RP23-248G11 on chromosome 11 Contains a
              heterogeneous nuclear ribonucleoprotein pseudogene and a
              CpG island, complete sequence
          Length = 210386

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    tcattatttcctcaaatcct 180
              ||||||||||||||||||||
Sbjct: 110586 tcattatttcctcaaatcct 110567



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>gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone ct7-326n13, complete
              sequence
          Length = 195413

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    tcattatttcctcaaatcct 180
              ||||||||||||||||||||
Sbjct: 184295 tcattatttcctcaaatcct 184314



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>gb|AY483219.1| Batis maritima maturase K (matK) gene, complete cds; chloroplast
          Length = 1503

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  caatccaaaagggttcata 66
           |||||||||||||||||||
Sbjct: 925 caatccaaaagggttcata 943



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>gb|AC099726.6| Mus musculus chromosome 7, clone RP23-342H24, complete sequence
          Length = 217218

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 72   gaatcagggacatatccccaaggacca 98
            |||||||||| ||| ||||||||||||
Sbjct: 5774 gaatcagggaaataaccccaaggacca 5748



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>gb|AC121856.3| Mus musculus BAC clone RP24-97G6 from chromosome 5, complete sequence
          Length = 195640

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   cacataaacatgggggaca 159
             |||||||||||||||||||
Sbjct: 71891 cacataaacatgggggaca 71873



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>gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, complete sequence
          Length = 237590

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 160    ttcattatttcctcaaatc 178
              |||||||||||||||||||
Sbjct: 228064 ttcattatttcctcaaatc 228082



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>gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, complete sequence
          Length = 217173

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 23    tttcataagagtacgtactatta 45
             |||| ||||||||||||||||||
Sbjct: 32371 tttcttaagagtacgtactatta 32349



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>emb|AL355136.19| Human DNA sequence from clone RP11-435P18 on chromosome 13, complete
              sequence
          Length = 200059

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 159    attcattatttcctcaaat 177
              |||||||||||||||||||
Sbjct: 132071 attcattatttcctcaaat 132053



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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
             complete sequence
          Length = 146168

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    actagtactccgtttcata 29
             |||||||||||||||||||
Sbjct: 34678 actagtactccgtttcata 34696



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>emb|BX470196.6| Zebrafish DNA sequence from clone CH211-157J23 in linkage group 24,
              complete sequence
          Length = 165383

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 159    attcattatttcctcaaat 177
              |||||||||||||||||||
Sbjct: 151240 attcattatttcctcaaat 151222



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 11       actagtactccgtttcata 29
                |||||||||||||||||||
Sbjct: 33983782 actagtactccgtttcata 33983800



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>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence
          Length = 212548

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   cacataaacatgggggaca 159
             |||||||||||||||||||
Sbjct: 43016 cacataaacatgggggaca 42998



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>gb|AC090523.1|AC090523 Caenorhabditis briggsae cosmid CB015N01, complete sequence
          Length = 98319

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 155   ggacattcattatttcctc 173
             |||||||||||||||||||
Sbjct: 16159 ggacattcattatttcctc 16177



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>gb|AC158300.4| Mus musculus chromosome 7, clone RP24-226N16, complete sequence
          Length = 161504

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 72    gaatcagggacatatccccaaggacca 98
             |||||||||| ||| ||||||||||||
Sbjct: 89084 gaatcagggaaataaccccaaggacca 89110



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>gb|AC092964.8| Homo sapiens 3 BAC RP11-423E7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114995

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 141   cacataaacatgggggaca 159
             |||||||||||||||||||
Sbjct: 95283 cacataaacatgggggaca 95301



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>gb|AC007388.4| Homo sapiens BAC clone RP11-395B14 from 2, complete sequence
          Length = 152155

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 151   tgggggacattcattattt 169
             |||||||||||||||||||
Sbjct: 22165 tgggggacattcattattt 22147



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>emb|CR855557.2| Xenopus tropicalis finished cDNA, clone TEgg027a09
          Length = 2408

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 143  cataaacatgggggacattcatt 165
            |||||||||| ||||||||||||
Sbjct: 1453 cataaacatgagggacattcatt 1431



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>gb|AC121315.14| Mus musculus chromosome 3, clone RP24-488I7, complete sequence
          Length = 153807

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 160   ttcattatttcctcaaatc 178
             |||||||||||||||||||
Sbjct: 19208 ttcattatttcctcaaatc 19226



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>emb|Z48585.1|CEZK673 Caenorhabditis elegans Cosmid ZK673, complete sequence
          Length = 27540

 Score = 38.2 bits (19), Expect = 9.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 155  ggacattcattatttcctcaaat 177
            |||||||||||||||||| ||||
Sbjct: 8536 ggacattcattatttccttaaat 8514


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,259,916
Number of Sequences: 3902068
Number of extensions: 1259916
Number of successful extensions: 85402
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 85248
Number of HSP's gapped (non-prelim): 154
length of query: 198
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 176
effective length of database: 17,147,199,772
effective search space: 3017907159872
effective search space used: 3017907159872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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