Clone Name | rbart37f03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY335488.1| Oryza sativa (japonica cultivar-group) enolase (Eno1) mRNA, complete cds Length = 1659 Score = 48.1 bits (24), Expect = 0.010 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 95 accaaaattggagcgagttttgggggtacatatccg 130 |||||||||||||| ||||| ||||||||||||||| Sbjct: 1546 accaaaattggagcaagttt-gggggtacatatccg 1512
>gb|AC131375.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0015J03, complete sequence Length = 165933 Score = 48.1 bits (24), Expect = 0.010 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 95 accaaaattggagcgagttttgggggtacatatccg 130 |||||||||||||| ||||| ||||||||||||||| Sbjct: 58107 accaaaattggagcaagttt-gggggtacatatccg 58141
>gb|AC116603.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0015J03, complete sequence Length = 135940 Score = 48.1 bits (24), Expect = 0.010 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 95 accaaaattggagcgagttttgggggtacatatccg 130 |||||||||||||| ||||| ||||||||||||||| Sbjct: 1894 accaaaattggagcaagttt-gggggtacatatccg 1860
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 48.1 bits (24), Expect = 0.010 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 95 accaaaattggagcgagttttgggggtacatatccg 130 |||||||||||||| ||||| ||||||||||||||| Sbjct: 4290566 accaaaattggagcaagttt-gggggtacatatccg 4290600
>dbj|AK073662.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048K07, full insert sequence Length = 1651 Score = 48.1 bits (24), Expect = 0.010 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 95 accaaaattggagcgagttttgggggtacatatccg 130 |||||||||||||| ||||| ||||||||||||||| Sbjct: 1577 accaaaattggagcaagttt-gggggtacatatccg 1543
>gb|U09450.1|OSU09450 Oryza sativa enolase mRNA, complete cds Length = 1687 Score = 48.1 bits (24), Expect = 0.010 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Minus Query: 95 accaaaattggagcgagttttgggggtacatatccg 130 |||||||||||||| ||||| ||||||||||||||| Sbjct: 1608 accaaaattggagcaagttt-gggggtacatatccg 1574
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 48.1 bits (24), Expect = 0.010 Identities = 34/36 (94%), Gaps = 1/36 (2%) Strand = Plus / Plus Query: 95 accaaaattggagcgagttttgggggtacatatccg 130 |||||||||||||| ||||| ||||||||||||||| Sbjct: 4291387 accaaaattggagcaagttt-gggggtacatatccg 4291421
>gb|AC114045.5| Rattus norvegicus 20 BAC CH230-187J1 (Children's Hospital Oakland Research Institute) complete sequence Length = 211095 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 atgggggacattcattattt 169 |||||||||||||||||||| Sbjct: 167279 atgggggacattcattattt 167298
>gb|AF016451.1| Caenorhabditis elegans cosmid C03A7, complete sequence Length = 41609 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ttcattatttcctcaaatcc 179 |||||||||||||||||||| Sbjct: 18141 ttcattatttcctcaaatcc 18160
>emb|BX248341.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 8/14 Length = 306050 Score = 40.1 bits (20), Expect = 2.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 169 tcctcaaatcctacgagcttcaacaaga 196 |||||||||||| |||||| |||||||| Sbjct: 276887 tcctcaaatccttcgagctgcaacaaga 276914
>emb|AL663065.9| Mouse DNA sequence from clone RP23-248G11 on chromosome 11 Contains a heterogeneous nuclear ribonucleoprotein pseudogene and a CpG island, complete sequence Length = 210386 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tcattatttcctcaaatcct 180 |||||||||||||||||||| Sbjct: 110586 tcattatttcctcaaatcct 110567
>gb|AC068912.29| Mus musculus strain 129/Sv chromosome 11 clone ct7-326n13, complete sequence Length = 195413 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 tcattatttcctcaaatcct 180 |||||||||||||||||||| Sbjct: 184295 tcattatttcctcaaatcct 184314
>gb|AY483219.1| Batis maritima maturase K (matK) gene, complete cds; chloroplast Length = 1503 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 caatccaaaagggttcata 66 ||||||||||||||||||| Sbjct: 925 caatccaaaagggttcata 943
>gb|AC099726.6| Mus musculus chromosome 7, clone RP23-342H24, complete sequence Length = 217218 Score = 38.2 bits (19), Expect = 9.8 Identities = 25/27 (92%) Strand = Plus / Minus Query: 72 gaatcagggacatatccccaaggacca 98 |||||||||| ||| |||||||||||| Sbjct: 5774 gaatcagggaaataaccccaaggacca 5748
>gb|AC121856.3| Mus musculus BAC clone RP24-97G6 from chromosome 5, complete sequence Length = 195640 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 141 cacataaacatgggggaca 159 ||||||||||||||||||| Sbjct: 71891 cacataaacatgggggaca 71873
>gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, complete sequence Length = 237590 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 160 ttcattatttcctcaaatc 178 ||||||||||||||||||| Sbjct: 228064 ttcattatttcctcaaatc 228082
>gb|AC115754.7| Mus musculus chromosome 12, clone RP23-34D20, complete sequence Length = 217173 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 23 tttcataagagtacgtactatta 45 |||| |||||||||||||||||| Sbjct: 32371 tttcttaagagtacgtactatta 32349
>emb|AL355136.19| Human DNA sequence from clone RP11-435P18 on chromosome 13, complete sequence Length = 200059 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 159 attcattatttcctcaaat 177 ||||||||||||||||||| Sbjct: 132071 attcattatttcctcaaat 132053
>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24, complete sequence Length = 146168 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 actagtactccgtttcata 29 ||||||||||||||||||| Sbjct: 34678 actagtactccgtttcata 34696
>emb|BX470196.6| Zebrafish DNA sequence from clone CH211-157J23 in linkage group 24, complete sequence Length = 165383 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 159 attcattatttcctcaaat 177 ||||||||||||||||||| Sbjct: 151240 attcattatttcctcaaat 151222
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 actagtactccgtttcata 29 ||||||||||||||||||| Sbjct: 33983782 actagtactccgtttcata 33983800
>gb|AC102372.8| Mus musculus chromosome 5, clone RP23-262J12, complete sequence Length = 212548 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 141 cacataaacatgggggaca 159 ||||||||||||||||||| Sbjct: 43016 cacataaacatgggggaca 42998
>gb|AC090523.1|AC090523 Caenorhabditis briggsae cosmid CB015N01, complete sequence Length = 98319 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 155 ggacattcattatttcctc 173 ||||||||||||||||||| Sbjct: 16159 ggacattcattatttcctc 16177
>gb|AC158300.4| Mus musculus chromosome 7, clone RP24-226N16, complete sequence Length = 161504 Score = 38.2 bits (19), Expect = 9.8 Identities = 25/27 (92%) Strand = Plus / Plus Query: 72 gaatcagggacatatccccaaggacca 98 |||||||||| ||| |||||||||||| Sbjct: 89084 gaatcagggaaataaccccaaggacca 89110
>gb|AC092964.8| Homo sapiens 3 BAC RP11-423E7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114995 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 141 cacataaacatgggggaca 159 ||||||||||||||||||| Sbjct: 95283 cacataaacatgggggaca 95301
>gb|AC007388.4| Homo sapiens BAC clone RP11-395B14 from 2, complete sequence Length = 152155 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 151 tgggggacattcattattt 169 ||||||||||||||||||| Sbjct: 22165 tgggggacattcattattt 22147
>emb|CR855557.2| Xenopus tropicalis finished cDNA, clone TEgg027a09 Length = 2408 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 143 cataaacatgggggacattcatt 165 |||||||||| |||||||||||| Sbjct: 1453 cataaacatgagggacattcatt 1431
>gb|AC121315.14| Mus musculus chromosome 3, clone RP24-488I7, complete sequence Length = 153807 Score = 38.2 bits (19), Expect = 9.8 Identities = 19/19 (100%) Strand = Plus / Plus Query: 160 ttcattatttcctcaaatc 178 ||||||||||||||||||| Sbjct: 19208 ttcattatttcctcaaatc 19226
>emb|Z48585.1|CEZK673 Caenorhabditis elegans Cosmid ZK673, complete sequence Length = 27540 Score = 38.2 bits (19), Expect = 9.8 Identities = 22/23 (95%) Strand = Plus / Minus Query: 155 ggacattcattatttcctcaaat 177 |||||||||||||||||| |||| Sbjct: 8536 ggacattcattatttccttaaat 8514 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,259,916 Number of Sequences: 3902068 Number of extensions: 1259916 Number of successful extensions: 85402 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 85248 Number of HSP's gapped (non-prelim): 154 length of query: 198 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 176 effective length of database: 17,147,199,772 effective search space: 3017907159872 effective search space used: 3017907159872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)