ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZDH20_MOUSE (Q5Y5T1) Probable palmitoyltransferase ZDHHC20 (EC 2... 30 4.3
2AGL11_ARATH (Q38836) Agamous-like MADS-box protein AGL11 29 7.3

>ZDH20_MOUSE (Q5Y5T1) Probable palmitoyltransferase ZDHHC20 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 20) (DHHC-20)
          Length = 380

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 161 CCVRCVTWSALPFPTFIFASYSTLHYHLGLCVSLFVRVG 45
           CC R V W  + F TF+   +S   Y + LCVS   R G
Sbjct: 9   CCQRVVGWVPVLFITFVVV-WSYYAYVVELCVSTISRTG 46



to top

>AGL11_ARATH (Q38836) Agamous-like MADS-box protein AGL11|
          Length = 230

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 418 TKAKLFRRFHQHHHAHDSENEVDEVEELARK 326
           TK     R+ QHHH   S +E++ +E LA +
Sbjct: 169 TKVAEVERYQQHHHQMVSGSEINAIEALASR 199


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,110,548
Number of Sequences: 219361
Number of extensions: 810555
Number of successful extensions: 2716
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2664
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top