ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart37e12 |
|---|---|
| Clone Library Name | barley_pub |
>S6PD_MALDO (P28475) NADP-dependent D-sorbitol-6-phosphate dehydrogenase (EC| 1.1.1.200) (Aldose-6-phosphate reductase [NADPH]) (NADP-S6PDH) Length = 310 Score = 40.4 bits (93), Expect = 0.001 Identities = 15/28 (53%), Positives = 23/28 (82%) Frame = -2 Query: 380 EDMEKMKALDRSYRTNQPAKFWGIDLYA 297 EDM+ + ++DR YRT+ P+K WG+D+YA Sbjct: 283 EDMQLIYSIDRKYRTSLPSKTWGLDVYA 310
>TT16_ARATH (Q8RYD9) TRANSPARENT TESTA 16 protein (Arabidopsis BSISTER MADS-box| protein) Length = 252 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/39 (30%), Positives = 26/39 (66%) Frame = -2 Query: 155 PGSFSQYLQENQTRSNSIQQISPAKVLVTQLNPPYLVEL 39 PG + Q+L++ Q + NS+ Q++ L ++++P Y ++L Sbjct: 203 PGEYQQFLEQQQQQPNSVLQLA---TLPSEIDPTYNLQL 238
>NU5M_HUMAN (P03915) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 603 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = -1 Query: 177 IPFVLSHAWFILPVSSGKPDKVELHSANQS 88 I F+L+ AWFIL +S P ++ L +AN S Sbjct: 180 IGFILALAWFILHSNSWDPQQMALLNANPS 209
>DPOE2_CHICK (Q5ZKQ6) DNA polymerase epsilon subunit 2 (EC 2.7.7.7) (DNA| polymerase II subunit 2) (DNA polymerase epsilon subunit B) Length = 527 Score = 26.6 bits (57), Expect(2) = 3.3 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%) Frame = -3 Query: 193 NLRVHHSIRAESCLVHSPSIFRKT--RQGR-TPFSKSVLPKYWSHNLILRIW 47 N + +R S + P+ F KT QG TP V P YW+++ LR++ Sbjct: 421 NKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVY 472 Score = 20.8 bits (42), Expect(2) = 3.3 Identities = 9/27 (33%), Positives = 13/27 (48%) Frame = -1 Query: 369 EDEGPRPQLPHQPAGQVLGHRPLRLIP 289 ED GP LP P + + +L+P Sbjct: 368 EDPGPGSVLPRPPLAENITQEFRQLVP 394
>HPCE_ECOLI (P37352) Homoprotocatechuate catabolism bifunctional| isomerase/decarboxylase [Includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.10) (HHDD isomerase) (5-carboxymethyl-2-hydroxymuconate delta-isomerase); 5-carboxymethyl-2-oxo-hex Length = 427 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -3 Query: 148 HSPSIFRKTRQGRTPFSKSVLPKYW---SHNLILRIWLNSSI 32 + P++ K+R G TP +++PK HNL LR ++N + Sbjct: 318 YRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGEL 359
>ITB4_HUMAN (P16144) Integrin beta-4 precursor (GP150) (CD104 antigen)| Length = 1822 Score = 28.5 bits (62), Expect = 4.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +1 Query: 172 WNGELVNCAANTTSTIQVCLR 234 W+G+ NC+ + S IQ CLR Sbjct: 485 WSGQTCNCSTGSLSDIQPCLR 505
>HPAG_ECOLI (Q46978) 4-hydroxyphenylacetate degradation bifunctional| isomerase/decarboxylase [Includes: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.10) (HHDD isomerase) (5-carboxymethyl-2-hydroxymuconate delta-isomerase); 5-carboxymethyl-2-oxo Length = 429 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -3 Query: 148 HSPSIFRKTRQGRTPFSKSVLPKYW---SHNLILRIWLNSSI 32 + P++ K+R G TP +++PK HNL LR ++N + Sbjct: 318 YRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGEL 359
>SSXT_HUMAN (Q15532) SSXT protein (Synovial sarcoma, translocated to X| chromosome) (SYT protein) Length = 418 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 6/48 (12%) Frame = -1 Query: 381 RGHGEDEG-PRPQLPHQPAG---QVLGHRPLRLIPPH--DLLPGQYDQ 256 +G+G +G P PQ P+ P G Q G+RP + PP P YDQ Sbjct: 363 QGYGPSQGGPGPQYPNYPQGQGQQYGGYRPTQPGPPQPPQQRPYGYDQ 410
>Y1105_METKA (Q8TWD0) UPF0272 protein MK1105| Length = 395 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%) Frame = +3 Query: 288 VESSVE-VDAPELGRLVGAVAAVEGLHLLHVL 380 VE+SV+ VD +G L+ AV +EG+H + VL Sbjct: 250 VETSVDDVDGEAVGELIEAVLQLEGVHDVEVL 281
>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)| Length = 646 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = -1 Query: 381 RGHGEDEGPRPQLPHQPA--GQVLGHRPLRLI 292 RG G + PRP LP P G LG P+ L+ Sbjct: 606 RGRGGESPPRPPLPSPPGSRGSGLGRLPIPLL 637
>YQD5_CAEEL (Q09265) Hypothetical protein C32D5.5| Length = 288 Score = 27.7 bits (60), Expect = 7.0 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = -1 Query: 282 DLLPG-QYDQ*YGSSPLA*TNLNCRCCICSTIYEFTIPFVLSHAWFILPVSSGKPDKVEL 106 D++PG + YGS N++C CC C ++ + P+ S K K EL Sbjct: 226 DMVPGDEITCFYGSEFFGPNNIDCECCTCEKNMNGAFSYLRGNE-NAEPIISEKKTKYEL 284 Query: 105 HS 100 S Sbjct: 285 RS 286
>YTR1_EBV (P30119) Hypothetical protein BTRF1| Length = 425 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 7/37 (18%) Frame = -1 Query: 351 PQLPHQPAGQVLG-------HRPLRLIPPHDLLPGQY 262 P+L + PA QV H LRL+P DLLP Q+ Sbjct: 243 PKLGNAPAAQVSNVLIANRSHNSLRLVPNPDLLPLQH 279
>MAN2_DROME (Q24451) Alpha-mannosidase 2 (EC 3.2.1.114) (Alpha-mannosidase II)| (Mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase) (MAN II) (Golgi alpha-mannosidase II) (AMAN II) Length = 1108 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = +3 Query: 189 KLCCKYNIYNSGLFTLMASSHIIDRTVRGANHAVESSVEVD 311 K+CC+++ G F L + RT+ N A S + VD Sbjct: 343 KVCCQFDFKRMGSFGLSCPWKVPPRTISDQNVAARSDLLVD 383
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -1 Query: 381 RGHGEDEGPRPQLPHQPAGQVLGHRPLRLIPPH 283 RG GPR P G ++GH P + PH Sbjct: 782 RGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPH 814
>TXK_HUMAN (P42681) Tyrosine-protein kinase TXK (EC 2.7.10.2)| Length = 527 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 211 MLYLQHNLRVHHSIRAESCLVHSPSIFRKTRQGRTPF 101 M YL+ N +H + A +CLV S I + + G T + Sbjct: 378 MEYLERNGYIHRDLAARNCLVSSTCIVKISDFGMTRY 414
>Y4GN_RHISN (P55470) Hypothetical 45.0 kDa protein y4gN| Length = 383 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/45 (31%), Positives = 22/45 (48%) Frame = -3 Query: 208 LYLQHNLRVHHSIRAESCLVHSPSIFRKTRQGRTPFSKSVLPKYW 74 L+L HN + + R E ++H+ I+R+ R LP YW Sbjct: 9 LFLWHNPQTDNQCRNERHMIHTSKIYREI--NRIGVQIKGLPDYW 51
>RPOB2_CHLRE (Q8HTL7) DNA-directed RNA polymerase beta chain C-terminal subunit| (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta C-terminal section) (RNA polymerase beta subunit C-terminal section) Length = 626 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/46 (23%), Positives = 25/46 (54%) Frame = -3 Query: 271 RTVRSIIWELAISVNKPEL*MLYLQHNLRVHHSIRAESCLVHSPSI 134 +T + I+ + S K ++ ++NL +H ++CL+H P++ Sbjct: 76 KTQNATIFSMGTSAFKNQV-----KYNLETYHRSNQDTCLIHKPAV 116
>NU5M_PANPA (P03916) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH| dehydrogenase subunit 5) Length = 603 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = -1 Query: 177 IPFVLSHAWFILPVSSGKPDKVELHSANQS 88 I F+L+ AWF+L +S P ++ L S N S Sbjct: 180 IGFILALAWFLLHSNSWDPQQMVLLSTNPS 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,848,334 Number of Sequences: 219361 Number of extensions: 1311076 Number of successful extensions: 3541 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3409 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3538 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
