ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 37 0.018
2UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 36 0.040
3UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor 34 0.20
4KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) ... 29 4.9
5NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 29 6.4
6RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (M... 28 8.4

>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 37.4 bits (85), Expect = 0.018
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
 Frame = -1

Query: 452 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFPL--------- 300
           C  D+    C  CV  A  E+   C   R   + Y SCM RY    F   L         
Sbjct: 85  CIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFLSTLETKPNTYWS 144

Query: 299 --DGADKSADEVGQ 264
             D   KS D+ GQ
Sbjct: 145 SDDPIPKSYDKFGQ 158



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>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 36.2 bits (82), Expect = 0.040
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -1

Query: 452 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 327
           CT D+    C  CV  A  E+   C   R   + Y  CM RY
Sbjct: 88  CTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129



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>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = -1

Query: 452 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 327
           CT D+    C  CV  A  E+   C   R   +    CM RY
Sbjct: 84  CTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRY 125



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = -1

Query: 452 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFP 303
           CT D+   +C  C+  A+ EL   C  +    +   +CM  ++ Y    P
Sbjct: 200 CTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDTYNSSLP 249



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>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)|
          Length = 416

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%)
 Frame = -2

Query: 187 LRGHSSSLCVP-----GPGGGGES 131
           LRGH+S  CVP      PGGGG++
Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338



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>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 474

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -1

Query: 230 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 141
           CL +TNY  + S T++  R LQL++   + WW
Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359



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>RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (Mitochondrial|
           ribosomal protein 51)
          Length = 360

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 1   GFANMKITRWRFARNYIFTSKHVHKQTQGLDSRLATS*PYTNKWIRHHH 147
           GF++    R   +  +  TSK   KQ +  + ++A   P   KW++ HH
Sbjct: 125 GFSSRLSARTPLSSFFGLTSKSDAKQWKAAEKKVAALRPAFKKWLQDHH 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,548,316
Number of Sequences: 219361
Number of extensions: 1191770
Number of successful extensions: 3944
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3930
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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