Clone Name | rbart37e08 |
---|---|
Clone Library Name | barley_pub |
>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor| Length = 286 Score = 37.4 bits (85), Expect = 0.018 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 11/74 (14%) Frame = -1 Query: 452 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFPL--------- 300 C D+ C CV A E+ C R + Y SCM RY F L Sbjct: 85 CIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFLSTLETKPNTYWS 144 Query: 299 --DGADKSADEVGQ 264 D KS D+ GQ Sbjct: 145 SDDPIPKSYDKFGQ 158
>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor| Length = 287 Score = 36.2 bits (82), Expect = 0.040 Identities = 15/42 (35%), Positives = 18/42 (42%) Frame = -1 Query: 452 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 327 CT D+ C CV A E+ C R + Y CM RY Sbjct: 88 CTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129
>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor| Length = 287 Score = 33.9 bits (76), Expect = 0.20 Identities = 14/42 (33%), Positives = 17/42 (40%) Frame = -1 Query: 452 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 327 CT D+ C CV A E+ C R + CM RY Sbjct: 84 CTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRY 125 Score = 29.6 bits (65), Expect = 3.8 Identities = 13/50 (26%), Positives = 22/50 (44%) Frame = -1 Query: 452 CTRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFP 303 CT D+ +C C+ A+ EL C + + +CM ++ Y P Sbjct: 200 CTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDTYNSSLP 249
>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)| Length = 416 Score = 29.3 bits (64), Expect = 4.9 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%) Frame = -2 Query: 187 LRGHSSSLCVP-----GPGGGGES 131 LRGH+S CVP PGGGG++ Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338
>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 474 Score = 28.9 bits (63), Expect = 6.4 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = -1 Query: 230 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 141 CL +TNY + S T++ R LQL++ + WW Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359
>RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (Mitochondrial| ribosomal protein 51) Length = 360 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = +1 Query: 1 GFANMKITRWRFARNYIFTSKHVHKQTQGLDSRLATS*PYTNKWIRHHH 147 GF++ R + + TSK KQ + + ++A P KW++ HH Sbjct: 125 GFSSRLSARTPLSSFFGLTSKSDAKQWKAAEKKVAALRPAFKKWLQDHH 173 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,548,316 Number of Sequences: 219361 Number of extensions: 1191770 Number of successful extensions: 3944 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3930 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)