ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart37e07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC124725.3| Mus musculus BAC clone RP23-459F16 from chromosome 2, complete sequence Length = 168983 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Minus Query: 117 aaactaacaaataaacaaagcag 139 ||||||||||||||||||||||| Sbjct: 77392 aaactaacaaataaacaaagcag 77370
>emb|BX294446.6| Mouse DNA sequence from clone RP23-459F16 on chromosome 2, complete sequence Length = 73907 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Plus Query: 117 aaactaacaaataaacaaagcag 139 ||||||||||||||||||||||| Sbjct: 20845 aaactaacaaataaacaaagcag 20867
>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete sequence Length = 271546 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 19 taacaataatattacacatata 40 |||||||||||||||||||||| Sbjct: 180404 taacaataatattacacatata 180383
>gb|AC125168.4| Mus musculus BAC clone RP24-449N2 from chromosome 3, complete sequence Length = 166604 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Minus Query: 113 aaataaactaacaaataaacaaagca 138 |||||||| ||||||||||||||||| Sbjct: 78394 aaataaacaaacaaataaacaaagca 78369
>gb|AC099414.4| Mus musculus BAC clone RP23-122C18 from 3, complete sequence Length = 203057 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 113 aaataaactaacaaataaacaaagca 138 |||||||| ||||||||||||||||| Sbjct: 11127 aaataaacaaacaaataaacaaagca 11152
>emb|CR933523.10| Zebrafish DNA sequence from clone CH211-127H20 in linkage group 8, complete sequence Length = 112751 Score = 44.1 bits (22), Expect = 0.25 Identities = 25/26 (96%) Strand = Plus / Plus Query: 110 cgcaaataaactaacaaataaacaaa 135 ||||||||||| |||||||||||||| Sbjct: 92533 cgcaaataaacaaacaaataaacaaa 92558
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 gcaaataaactaacaaataaac 132 |||||||||||||||||||||| Sbjct: 2705852 gcaaataaactaacaaataaac 2705873 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaa 131 |||||||||||||||||||| Sbjct: 2705865 caaataaactaacaaataaa 2705884
>gb|AC139063.11| Mus musculus chromosome 7, clone RP23-73F23, complete sequence Length = 202863 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Plus Query: 114 aataaactaacaaataaacaaa 135 |||||||||||||||||||||| Sbjct: 60092 aataaactaacaaataaacaaa 60113
>gb|AC074313.29| Mus musculus strain C57BL/6J clone rp23-412j23 map 7, complete sequence Length = 199260 Score = 44.1 bits (22), Expect = 0.25 Identities = 22/22 (100%) Strand = Plus / Minus Query: 114 aataaactaacaaataaacaaa 135 |||||||||||||||||||||| Sbjct: 152024 aataaactaacaaataaacaaa 152003
>gb|AC153152.4| Mus musculus BAC clone RP23-78F1 from chromosome 12, complete sequence Length = 184523 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gcaaataaactaacaaataaa 131 ||||||||||||||||||||| Sbjct: 3769 gcaaataaactaacaaataaa 3789
>gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosome 10, complete sequence Length = 174545 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 tacacatatactcctacataa 51 ||||||||||||||||||||| Sbjct: 22567 tacacatatactcctacataa 22547
>ref|XM_718121.1| Candida albicans SC5314 sugar transporter-like protein (CaO19_6005), mRNA Length = 2235 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaac 132 ||||||||||||||||||||| Sbjct: 616 caaataaactaacaaataaac 596
>ref|XM_717974.1| Candida albicans SC5314 sugar transporter-like protein (CaO19_13426), mRNA Length = 2235 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaac 132 ||||||||||||||||||||| Sbjct: 616 caaataaactaacaaataaac 596
>gb|AY313848.1| Vaccinia virus strain Acambis clone 3, complete genome Length = 197418 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 106125 ttgctgctcgtataatctccc 106145
>gb|AY313847.1| Vaccinia virus strain Acambis clone 2000, complete genome Length = 199234 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 106080 ttgctgctcgtataatctccc 106100
>gb|AY603355.1| Vaccinia virus strain Acambis 3000 Modified Virus Ankara (MVA), complete genome Length = 166722 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 92292 ttgctgctcgtataatctccc 92312
>gb|AY678277.1| Vaccinia virus strain LC16mO, complete genome Length = 189157 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 105889 ttgctgctcgtataatctccc 105909
>gb|AY678276.1| Vaccinia virus strain Lister, complete genome Length = 189122 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 105774 ttgctgctcgtataatctccc 105794
>gb|AY678275.1| Vaccinia virus strain LC16m8, complete genome Length = 189158 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 105889 ttgctgctcgtataatctccc 105909
>gb|AC122023.3| Mus musculus BAC clone RP24-372O13 from 12, complete sequence Length = 179947 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gcaaataaactaacaaataaa 131 ||||||||||||||||||||| Sbjct: 151546 gcaaataaactaacaaataaa 151566
>gb|DQ377945.1| Vaccinia virus strain 3737, complete genome Length = 199377 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 108636 ttgctgctcgtataatctccc 108656
>emb|AL445523.11| Human DNA sequence from clone RP11-231N9 on chromosome X Contains a karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2) pseudogene and a chaperonin containing TCP1, subunit 4 (delta) (CCT4) pseudogene, complete sequence Length = 157946 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 taaactaacaaataaacaaag 136 ||||||||||||||||||||| Sbjct: 13984 taaactaacaaataaacaaag 13964
>emb|CR847858.15| Zebrafish DNA sequence from clone DKEY-78H3 in linkage group 5, complete sequence Length = 255113 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 114 aataaactaacaaataaacaa 134 ||||||||||||||||||||| Sbjct: 61248 aataaactaacaaataaacaa 61228
>gb|AF438165.1| Camelpox virus M-96 from Kazakhstan, complete genome Length = 205719 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 106118 ttgctgctcgtataatctccc 106138
>emb|Y16780.1|VMVY16780 variola minor virus complete genome Length = 186986 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 95114 ttgctgctcgtataatctccc 95134
>emb|X69198.1|VVCGAA Variola virus DNA complete genome Length = 185578 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 94109 ttgctgctcgtataatctccc 94129
>emb|X67119.1|VVHINDQKH Variola virus (HindIII-Q,K,H,M,L,I,F genome fragment) genes Length = 47780 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 43994 ttgctgctcgtataatctccc 44014
>gb|DQ358238.1| Buffalopox virus isolate AUR04 envelope protein (D8L) gene, complete cds Length = 915 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 724 ttgctgctcgtataatctccc 704
>gb|DQ358237.1| Buffalopox virus isolate VIJ96 envelope protein (D8L) gene, complete cds Length = 915 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 724 ttgctgctcgtataatctccc 704
>gb|DQ358236.1| Buffalopox virus isolate BP4 envelope protein (D8L) gene, complete cds Length = 915 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 724 ttgctgctcgtataatctccc 704
>gb|AC158799.8| Mus musculus BAC RP24-430K11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 161705 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 tacacatatactcctacataa 51 ||||||||||||||||||||| Sbjct: 150361 tacacatatactcctacataa 150341
>emb|BX465863.11| Zebrafish DNA sequence from clone RP71-5C20 in linkage group 5, complete sequence Length = 117261 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 114 aataaactaacaaataaacaa 134 ||||||||||||||||||||| Sbjct: 110668 aataaactaacaaataaacaa 110688
>gb|AY009089.1| Camelpox virus CMS, complete genome Length = 202205 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 104328 ttgctgctcgtataatctccc 104348
>emb|BX321884.15| Zebrafish DNA sequence from clone DKEYP-29A10 in linkage group 3, complete sequence Length = 173019 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaac 132 ||||||||||||||||||||| Sbjct: 94789 caaataaactaacaaataaac 94809
>gb|M35027.1|VACCG Vaccinia virus Copenhagen, complete genome Length = 191737 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 106397 ttgctgctcgtataatctccc 106417
>gb|AY243312.1| Vaccinia virus WR, complete genome Length = 194711 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 103252 ttgctgctcgtataatctccc 103272
>gb|AY766183.1| Vaccinia virus strain ACAM1000, partial sequence Length = 201404 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 93363 ttgctgctcgtataatctccc 93343
>gb|U94848.1| Vaccinia virus strain Ankara, complete genomic sequence Length = 177923 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 98082 ttgctgctcgtataatctccc 98102
>emb|BX571720.6| Zebrafish DNA sequence from clone DKEY-77G5 in linkage group 17, complete sequence Length = 227706 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 18 ataacaataatattacacatatact 42 ||||||||||||||| ||||||||| Sbjct: 155890 ataacaataatattatacatatact 155914
>gb|AY965269.1| Synthetic construct clone VACV-WR_113 unknown gene Length = 993 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 802 ttgctgctcgtataatctccc 782
>gb|AF095689.1|AF095689 Vaccinia virus (strain Tian Tan) complete genome Length = 189274 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 102821 ttgctgctcgtataatctccc 102841
>emb|CR388080.12| Zebrafish DNA sequence from clone CH211-174H4 in linkage group 19, complete sequence Length = 153236 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 111 gcaaataaactaacaaataaacaaa 135 ||||||||||||||||| ||||||| Sbjct: 40280 gcaaataaactaacaaacaaacaaa 40256
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 241 gattaaccaaagtaattaaac 261 ||||||||||||||||||||| Sbjct: 320411 gattaaccaaagtaattaaac 320391
>gb|L22579.1|VARCG Variola major virus (strain Bangladesh-1975) complete genome Length = 186103 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 94739 ttgctgctcgtataatctccc 94759
>gb|M15058.1|VACHIND3D Vaccinia virus (strain WR) HindIII D fragment DNA, complete Length = 16060 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 9407 ttgctgctcgtataatctccc 9427
>gb|J05190.1|VACCSBP Vaccinia virus cell surface-binding protein gene, complete cds Length = 1020 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 ttgctgctcgtataatctccc 103 ||||||||||||||||||||| Sbjct: 784 ttgctgctcgtataatctccc 764
>gb|AC154815.2| Mus musculus BAC clone RP24-534C22 from chromosome 9, complete sequence Length = 173315 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 43613 caaataaacaaacaaataaacaaa 43590
>gb|AC165353.4| Mus musculus BAC clone RP23-167C2 from chromosome 3, complete sequence Length = 198393 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 161259 caaataaacaaacaaataaacaaa 161282
>ref|NM_001017003.2| Xenopus tropicalis hypothetical protein LOC549757 (LOC549757), mRNA Length = 1754 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cagtacagggaacagattaa 246 |||||||||||||||||||| Sbjct: 533 cagtacagggaacagattaa 552
>gb|AC120159.9| Mus musculus chromosome 19, clone RP24-408B13, complete sequence Length = 178918 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 31560 caaataaacaaacaaataaacaaa 31537
>emb|CT009661.10| Mouse DNA sequence from clone CH29-621D18 on chromosome 17, complete sequence Length = 224982 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 181150 caaataaacaaacaaataaacaaa 181127
>emb|Z83111.1|CEF57G8 Caenorhabditis elegans Cosmid F57G8, complete sequence Length = 26581 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 tattagaaaaacacatcaca 82 |||||||||||||||||||| Sbjct: 12028 tattagaaaaacacatcaca 12009
>gb|AC135963.3| Mus musculus BAC clone RP23-346N11 from chromosome 7, complete sequence Length = 202404 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 97119 caaataaacaaacaaataaacaaa 97142
>gb|AC025277.10| Homo sapiens chromosome 16 clone CTD-3229J4, complete sequence Length = 189032 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 |||||||||||||||| ||||||| Sbjct: 48271 caaataaactaacaaacaaacaaa 48248
>gb|AC125135.5| Mus musculus BAC clone RP24-321M1 from chromosome 17, complete sequence Length = 182503 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 |||||||||||||||| ||||||| Sbjct: 99810 caaataaactaacaaacaaacaaa 99787
>gb|AC124460.5| Mus musculus BAC clone RP24-142P7 from chromosome 13, complete sequence Length = 184155 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaagcag 139 ||||||||| |||||| ||||||||||| Sbjct: 113622 caaataaacaaacaaacaaacaaagcag 113649
>emb|CR450787.6| Zebrafish DNA sequence from clone CH211-222O17 in linkage group 12, complete sequence Length = 212974 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 180725 caaataaacaaacaaataaacaaa 180748
>gb|AC113998.5| Mus musculus BAC clone RP23-137C20 from 13, complete sequence Length = 194221 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 89138 caaataaacaaacaaataaacaaa 89161
>emb|Z75741.1|HS107N3 Human DNA sequence from clone RP1-107N3 on chromosome X Contains a kinesin heavy chain member 2 (KIF2) pseudogene and a Huntingtin interacting protein K (HYPK) pseudogene, complete sequence Length = 174045 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aaactaacaaataaacaaag 136 |||||||||||||||||||| Sbjct: 7207 aaactaacaaataaacaaag 7188
>emb|CR381602.30| Zebrafish DNA sequence from clone DKEY-183M22 in linkage group 6, complete sequence Length = 192136 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 89428 caaataaacgaacaaataaacaaa 89405
>gb|AE014838.1| Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 192022 caaataaacaaacaaataaacaaa 192045
>emb|AL136525.17| Human DNA sequence from clone RP11-147H23 on chromosome 13 Contains the 3' end of gene for a novel protein similar to phosphoinositide-binding protein and the 3' end of a novel gene for a novel protein similar to oxidoreductase, complete sequence Length = 145340 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 36259 caaataaacaaacaaataaacaaa 36236
>emb|AL121986.12|HSBA101J8 Human DNA sequence from clone RP11-101J8 on chromosome 1q21.2-22 Contains the CD1A gene for CD1A antigen, a polypeptide, a high-mobility group nucleosome binding domain 1 (HMGN1) pseudogene, the CD1C gene for CD1C antigen, c polypeptide, the CD1B gene for CD1B antigen, b polypeptide, the CD1E gene for CD1E antigen, e polypeptide, the OR10T2 gene for olfactory receptor, family 10, subfamily T, member 2 and the OR10K2 gene for olfactory receptor, family 10, subfamily K, member 2, complete sequence Length = 168753 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 acaaagttattagaaaaaca 75 |||||||||||||||||||| Sbjct: 12653 acaaagttattagaaaaaca 12672
>gb|AC157785.2| Mus musculus chromosome 19, clone RP24-272L14, complete sequence Length = 159030 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 18574 caaataaacaaacaaataaacaaa 18597
>emb|AL929359.1|PFA929359 Plasmodium falciparum strain 3D7, chromosome 9; segment 5/5 Length = 281723 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 |||| ||||||||||||||||||| Sbjct: 189016 caaacaaactaacaaataaacaaa 188993
>emb|AL031745.8|PFMAL1P2 Plasmodium falciparum DNA from MAL1P2 Length = 384550 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 357385 caaataaacaaacaaataaacaaa 357408
>emb|AL662841.10| Mouse DNA sequence from clone RP23-31O3 on chromosome 11 Contains the 3' end of a novel gene and a CpG island, complete sequence Length = 109589 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 gcaaataaactaacaaataa 130 |||||||||||||||||||| Sbjct: 8408 gcaaataaactaacaaataa 8389
>emb|CR854930.5| Zebrafish DNA sequence from clone CH211-268F11 in linkage group 13, complete sequence Length = 92936 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 |||||||| ||||||||||||||| Sbjct: 19611 caaataaattaacaaataaacaaa 19634
>emb|BX465856.14| Zebrafish DNA sequence from clone DKEY-88D24 in linkage group 17, complete sequence Length = 156899 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 88682 caaataaacaaacaaataaacaaa 88659
>emb|BX293994.28| Zebrafish DNA sequence from clone DKEY-256K14 in linkage group 10, complete sequence Length = 210640 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 144927 caaataaacaaacaaataaacaaa 144904
>gb|AC079822.13| Homo sapiens 3 BAC RP11-413G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181672 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 acaaagttattagaaaaaca 75 |||||||||||||||||||| Sbjct: 66454 acaaagttattagaaaaaca 66473
>emb|CR405690.6| Zebrafish DNA sequence from clone CH211-208M13 in linkage group 22, complete sequence Length = 195552 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 18217 caaataaacaaacaaataaacaaa 18240
>gb|AC011193.3| Homo sapiens chromosome 17, clone RP11-521P1, complete sequence Length = 181022 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 57919 caaataaacaaacaaataaacaaa 57942
>gb|AC091938.2| Homo sapiens chromosome 5 clone RP11-329N11, complete sequence Length = 70122 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 gcaaataaactaacaaataa 130 |||||||||||||||||||| Sbjct: 34301 gcaaataaactaacaaataa 34320
>gb|AC164576.4| Mus musculus 10 BAC RP23-50F14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205209 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 58584 caaataaacaaacaaataaacaaa 58607
>dbj|AK156752.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830047N21 product:unclassifiable, full insert sequence Length = 2735 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 162 caaataaacaaacaaataaacaaa 185
>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence Length = 247769 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 |||||||||||||||| ||||||| Sbjct: 9305 caaataaactaacaaacaaacaaa 9328
>gb|AC153485.9| Mus musculus 10 BAC RP23-319B13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 213412 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 153108 caaataaacaaacaaataaacaaa 153131
>gb|AF119909.1|AF119909 Homo sapiens PRO2958 mRNA, complete cds Length = 1857 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaa 131 |||||||||||||||||||| Sbjct: 226 caaataaactaacaaataaa 245
>gb|AC007738.2|AC007738 Homo sapiens BAC clone RP11-32P22 from 2, complete sequence Length = 183438 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaa 131 |||||||||||||||||||| Sbjct: 138855 caaataaactaacaaataaa 138874
>gb|AE014848.1| Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence Length = 250707 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 77999 caaataaacaaacaaataaacaaa 77976 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 77987 caaataaacaaacaaataaacaaa 77964 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 77975 caaataaacaaacaaataaacaaa 77952 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 77963 caaataaacaaacaaataaacaaa 77940
>gb|AC104564.11| Homo sapiens chromosome 17, clone RP11-68I3, complete sequence Length = 173058 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 83397 caaataaacaaacaaataaacaaa 83374
>emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 in linkage group 17, complete sequence Length = 181677 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 83934 caaataaacaaacaaataaacaaa 83957
>emb|BX664611.6| Mouse DNA sequence from clone RP24-201C13 on chromosome X, complete sequence Length = 59966 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 108 ctcgcaaataaactaacaaataaacaaa 135 ||||||||||||| |||||| ||||||| Sbjct: 41348 ctcgcaaataaacaaacaaacaaacaaa 41375
>gb|AC002482.1|AC002482 Human BAC clone CTA-208O3, complete sequence Length = 107815 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 85268 caaataaacaaacaaataaacaaa 85245
>emb|CT033816.7| Zebrafish DNA sequence from clone CH211-109N19 in linkage group 1, complete sequence Length = 166556 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 111 gcaaataaactaacaaataaacaaagca 138 ||||| |||| ||||||||||||||||| Sbjct: 117179 gcaaacaaacaaacaaataaacaaagca 117206
>emb|CR925717.8| Zebrafish DNA sequence from clone CH211-30B16 in linkage group 19, complete sequence Length = 103832 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaa 131 |||||||||||||||||||| Sbjct: 64157 caaataaactaacaaataaa 64138
>gb|AC118935.7| Mus musculus chromosome 5, clone RP24-172P15, complete sequence Length = 168119 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 110351 caaataaacaaacaaataaacaaa 110328
>emb|AL732455.6| Zebrafish DNA sequence from clone CH211-225J17 in linkage group 7, complete sequence Length = 192578 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 125037 caaataaacaaacaaataaacaaa 125014
>emb|BX088709.6| Zebrafish DNA sequence from clone CH211-15J21 in linkage group 15, complete sequence Length = 156236 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 96984 caaataaacaaacaaataaacaaa 96961
>emb|BX323056.5| Zebrafish DNA sequence from clone DKEY-97O5 in linkage group 20, complete sequence Length = 134072 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaa 131 |||||||||||||||||||| Sbjct: 109314 caaataaactaacaaataaa 109295
>emb|BX005071.4| Zebrafish DNA sequence from clone CH211-139O14 in linkage group 7, complete sequence Length = 174225 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 115865 caaataaacaaacaaataaacaaa 115888
>emb|BX510325.3| Zebrafish DNA sequence from clone CH211-149A22 in linkage group 19, complete sequence Length = 147275 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 |||||||||| ||||||||||||| Sbjct: 77477 caaataaacttacaaataaacaaa 77454
>gb|AC124979.8| Mus musculus chromosome 3, clone RP24-117N14, complete sequence Length = 187567 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 60838 caaataaacaaacaaataaacaaa 60861
>emb|CR762314.2| Xenopus tropicalis finished cDNA, clone TGas109f05 Length = 1754 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cagtacagggaacagattaa 246 |||||||||||||||||||| Sbjct: 533 cagtacagggaacagattaa 552
>gb|AC124118.15| Mus musculus chromosome 3, clone RP23-152K14, complete sequence Length = 199667 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 172142 caaataaacaaacaaataaacaaa 172165
>emb|AL732517.20| Mouse DNA sequence from clone RP23-134K17 on chromosome 4, complete sequence Length = 139314 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 115179 caaataaacaaacaaataaacaaa 115156
>gb|AC159275.6| Mus musculus BAC clone RP23-367C13 from chromosome 8, complete sequence Length = 195034 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 93798 caaataaacaaacaaataaacaaa 93821
>emb|BX294380.7| Zebrafish DNA sequence from clone DKEY-58N10 in linkage group 3, complete sequence Length = 212685 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 |||||||||||||||| ||||||| Sbjct: 194008 caaataaactaacaaacaaacaaa 193985
>emb|BX000479.11| Mouse DNA sequence from clone RP23-139I16 on chromosome X, complete sequence Length = 145084 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 aaactaacaaataaacaaag 136 |||||||||||||||||||| Sbjct: 88779 aaactaacaaataaacaaag 88760
>gb|AC140457.3| Mus musculus BAC clone RP23-15F7 from 12, complete sequence Length = 215722 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 88627 caaataaacaaacaaataaacaaa 88604
>gb|AC132137.3| Mus musculus BAC clone RP23-153E2 from 3, complete sequence Length = 196413 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 158515 caaataaacaaacaaataaacaaa 158492
>gb|AC133510.3| Mus musculus BAC clone RP23-409B11 from 8, complete sequence Length = 195449 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 74400 caaataaacaaacaaataaacaaa 74377
>emb|AL935047.12| Zebrafish DNA sequence from clone DKEY-20L10, complete sequence Length = 201929 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 100499 caaataaacgaacaaataaacaaa 100476
>emb|CR933002.7| Zebrafish DNA sequence from clone DKEY-246A18 in linkage group 1, complete sequence Length = 31933 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 13856 caaataaacaaacaaataaacaaa 13833
>gb|AC168881.3| Mus musculus BAC clone RP23-170A19 from chromosome 13, complete sequence Length = 212206 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 49997 caaataaacaaacaaataaacaaa 49974
>emb|AL603836.13| Mouse DNA sequence from clone RP23-56A14 on chromosome 7, complete sequence Length = 215366 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 21514 caaataaacaaacaaataaacaaa 21537
>dbj|AP002532.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 1/4 Length = 300000 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 acaaagttattagaaaaaca 75 |||||||||||||||||||| Sbjct: 91382 acaaagttattagaaaaaca 91401
>dbj|AB045357.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:893n23, complete sequence Length = 132131 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 acaaagttattagaaaaaca 75 |||||||||||||||||||| Sbjct: 91382 acaaagttattagaaaaaca 91401
>emb|AL732447.9| Mouse DNA sequence from clone RP23-142F14 on chromosome 2, complete sequence Length = 154433 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 112 caaataaactaacaaataaacaaa 135 |||| ||||||||||||||||||| Sbjct: 137907 caaacaaactaacaaataaacaaa 137884
>emb|AL626786.11| Mouse DNA sequence from clone RP23-269L6 on chromosome X, complete sequence Length = 156879 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 112 caaataaactaacaaataaacaaa 135 ||||||||| |||||||||||||| Sbjct: 142251 caaataaacaaacaaataaacaaa 142274 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,884,373 Number of Sequences: 3902068 Number of extensions: 2884373 Number of successful extensions: 80436 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 80096 Number of HSP's gapped (non-prelim): 340 length of query: 294 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 272 effective length of database: 17,147,199,772 effective search space: 4664038337984 effective search space used: 4664038337984 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
