>PSA1_ORYSA (P52428) Proteasome subunit alpha type 1 (EC 3.4.25.1) (20S|
           proteasome alpha subunit F) (20S proteasome subunit
           alpha-6) (Proteasome component C2)
          Length = 270

 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 40/45 (88%), Positives = 43/45 (95%)
 Frame = -3

Query: 494 SAIKETLQGEKLTSSNCTIAIVGRREDGTVEPFSMIDSKRIQEII 360
           SAIKETLQGEKLTSSNCT+AIVGR++DGTVEPF MID KRIQEII
Sbjct: 193 SAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQEII 237

>PSA1A_ARATH (P34066) Proteasome subunit alpha type 1-A (EC 3.4.25.1)|
           (Proteasome subunit alpha type 6) (20S proteasome alpha
           subunit F-1) (Proteasome 30 kDa subunit) (Proteasome
           component 2A) (AtPSM30)
          Length = 278

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 22/44 (50%), Positives = 30/44 (68%)
 Frame = -3

Query: 491 AIKETLQGEKLTSSNCTIAIVGRREDGTVEPFSMIDSKRIQEII 360
           A++ETLQGE L SS CT+AI+     G  EPF  +D + IQ++I
Sbjct: 194 AVRETLQGETLKSSLCTVAIL-----GVDEPFHFLDQEAIQKVI 232

>PSA1B_ARATH (O23712) Proteasome subunit alpha type 1-B (EC 3.4.25.1)|
           (Proteasome subunit alpha type 6) (20S proteasome alpha
           subunit F-2) (Proteasome component 2B)
          Length = 277

 Score = 42.4 bits (98), Expect = 7e-04
 Identities = 21/44 (47%), Positives = 30/44 (68%)
 Frame = -3

Query: 491 AIKETLQGEKLTSSNCTIAIVGRREDGTVEPFSMIDSKRIQEII 360
           AI+ETLQGE L SS CT++++     G  EPF  +D + IQ++I
Sbjct: 194 AIRETLQGETLKSSLCTVSVL-----GVDEPFHFLDQESIQKVI 232

>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7|
           homolog
          Length = 1304

 Score = 34.3 bits (77), Expect = 0.19
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 197 TTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPAS--SLIQPEHRPLAPRQ 343
           T PR P  P       RP+QG P      P PP     +  P H PL+P+Q
Sbjct: 518 TPPRPPGPPAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMSLPTHEPLSPQQ 568

>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)|
          Length = 392

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +2

Query: 203 PRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRP 328
           P  PS P    L   PL  HP L  H P PP   L  P H+P
Sbjct: 54  PAPPSPPAAPCLP--PLAHHPHLPPHPPPPPPQHLAAPAHQP 93

>CS007_HUMAN (Q9UPT8) Zinc finger CCCH-type domain-containing protein C19orf7|
          Length = 1303

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +2

Query: 197 TTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPAS--SLIQPEHRPLAPRQ 343
           T PR P          RP+QG P      P PP     +  P H PL+P+Q
Sbjct: 519 TPPRPPGPQAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMPMPVHEPLSPQQ 569

>YERA_BACSU (O34909) Putative adenine deaminase yerA (EC 3.5.4.2) (Adenase)|
           (Adenine aminase)
          Length = 580

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 216 DGHLGVVSSDRYVSC--LSHPLVPTPFRVSKKTRLLF*KGCHHCVYSLLLCHYSFVVPAS 43
           D +LGVV   R  S   L  PL P P  V  K  +L   GC    ++    H   +VP  
Sbjct: 327 DDYLGVVGPGRLASLNILEDPLNPNPVTVLSKGTILRENGCDLKAFTKTDWHKGGLVPL- 385

Query: 42  GQIDFYLSCDDV 7
            ++ + ++ DD+
Sbjct: 386 -ELSYDMTMDDL 396

>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 98  WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDETTPRCPSVPGHLVLR 241
           WQ +  N +VFL    GV  +     +   +  T+P CPS+P HL  R
Sbjct: 14  WQSWLPNHVVFLRLREGVRNQSPAEAEKPAAS-TSPSCPSLPPHLPTR 60

>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)|
           (Serine/arginine-rich protein-specific kinase 1)
           (SR-protein-specific kinase 1) (SFRS protein kinase 1)
          Length = 826

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 18/42 (42%), Positives = 19/42 (45%)
 Frame = +2

Query: 212 PSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLAP 337
           P  P        PLQG P LG  R  PPA  L +PE  P  P
Sbjct: 75  PLFPARPARALGPLQG-PALGGRRRPPPARPLTRPETPPAHP 115

>IGHE_HUMAN (P01854) Ig epsilon chain C region|
          Length = 428

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +2

Query: 35  ICPDAGTTKL*WHRSK-----EYTQ*WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDET 199
           + P  GT  L W R+        T+  +   N +L    TL  VGTR W   +TY+   T
Sbjct: 244 LAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLP-VGTRDWIEGETYQCRVT 302

Query: 200 TPRCP 214
            P  P
Sbjct: 303 HPHLP 307

>PSA1_YEAST (P40302) Proteasome component PRE5 (EC 3.4.25.1) (Macropain subunit|
           PRE5) (Proteinase YSCE subunit PRE5) (Multicatalytic
           endopeptidase complex subunit PRE5)
          Length = 234

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = -3

Query: 491 AIKETLQGEKLTSSNCTIAIVGRREDGTVEPFSMIDSKRIQEII 360
           AI ++L+ E LT  N +IAIVG+       PF++ D + + + I
Sbjct: 196 AISQSLRDESLTVDNLSIAIVGKD-----TPFTIYDGEAVAKYI 234

>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
 Frame = +2

Query: 203 PRCPSVPGHLVLRARPLQGHPQLGEHRPCPPAS------SLIQPEHRPLAP 337
           P  P  P H+   + P   HP+    +PCPP S       +++P H P  P
Sbjct: 66  PTTPKHPPHVKPPSTPK--HPKHPPQKPCPPPSHHGPKPPIVKPPHVPRPP 114

>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 98  WQPF*NNSLVFLETLNGVGTRGWDRHDTYRSDETTPRCPSVPGHLVLR 241
           WQ +  N +VFL    G+  +     D   +  T+P CP +P HL  R
Sbjct: 14  WQSWLPNHVVFLRLREGLKNQSPAEADK-PATSTSPSCPPLPPHLPTR 60

>RAGE_HUMAN (Q15109) Advanced glycosylation end product-specific receptor|
           precursor (Receptor for advanced glycosylation end
           products)
          Length = 404

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 158 RGWDRHDTYRSDETTPRCPSVPGHLVLRARPLQGHPQLGEHRPCPPASSLIQPEHRPLAP 337
           RG D   T+    +    P +P H  LR  P+Q  P++ E  P      +++PE   +AP
Sbjct: 198 RGGDPRPTFSCSFS----PGLPRHRALRTAPIQ--PRVWEPVPLEEVQLVVEPEGGAVAP 251


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,770,980
Number of Sequences: 219361
Number of extensions: 1270056
Number of successful extensions: 3747
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3745
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)