ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016455.1| Zea mays clone Contig288 mRNA sequence 52 0.001
2emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide t... 52 0.001
3emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide tr... 52 0.001
4ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.005
5ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group... 50 0.005
6ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group... 50 0.005
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
8dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
9dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.005
10dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
11dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
12dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.005
13dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mR... 50 0.005
14gb|BT016715.1| Zea mays clone Contig548 mRNA sequence 44 0.30
15emb|X57556.1|ZMANT1MU Z.mays MANT1 mRNA for adenine nucleotide t... 44 0.30
16gb|AY109420.1| Zea mays CL2269_1 mRNA sequence 44 0.30
17gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, com... 42 1.2
18gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, com... 42 1.2
19emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, OR... 42 1.2
20gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 40 4.6
21gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complet... 40 4.6
22dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 4.6 
>gb|BT016455.1| Zea mays clone Contig288 mRNA sequence
          Length = 1550

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 296  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||||| |  || | || |||||||| ||||||||||||||
Sbjct: 1283 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttctt 1230
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>emb|X59086.1|ZMANT2MU Z.mays MANT2 mRNA for adenine nucleotide translocator (ADP/ATP
            translocase)
          Length = 1511

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 296  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||||| |  || | || |||||||| ||||||||||||||
Sbjct: 1268 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttctt 1215
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>emb|X15712.1|ZMANTG2 Maize ANT-G2 gene for adenine nucleotide translocator
          Length = 2098

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 296  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||||| |  || | || |||||||| ||||||||||||||
Sbjct: 1936 ctcttgttcgtcatcatttttctccatttaagcaccgccggagccgtacttctt 1883
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>ref|XM_467495.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1577

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 298  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1247



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 104  aactcaaactcaaccctatgatagtaaa 131
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
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>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1578

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 298  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1248



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 104  aactcaaactcaaccctatgatagtaaa 131
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
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>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA
          Length = 1619

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 298  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1341 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1289



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 104  aactcaaactcaaccctatgatagtaaa 131
            |||||||||||||||||||||| |||||
Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                     
Query: 298      cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
                ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 29843335 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 29843283



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 104      aactcaaactcaaccctatgatagtaaa 131
                |||||||||||||||||||||| |||||
Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500
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>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ2056_H01
          Length = 123428

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                  
Query: 298   cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
             ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 99680 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 99628



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 104   aactcaaactcaaccctatgatagtaaa 131
             |||||||||||||||||||||| |||||
Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845
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>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
           BAC clone:OJ1008_D06
          Length = 112768

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                
Query: 298 cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
           ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 248



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 104 aactcaaactcaaccctatgatagtaaa 131
           |||||||||||||||||||||| |||||
Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465
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>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full
            insert sequence
          Length = 1578

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 298  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1300 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1248



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 104  aactcaaactcaaccctatgatagtaaa 131
            |||||||||||||||||||||| |||||
Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
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>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full
            insert sequence
          Length = 1577

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 298  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1299 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1247



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 104  aactcaaactcaaccctatgatagtaaa 131
            |||||||||||||||||||||| |||||
Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
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>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full
            insert sequence
          Length = 1618

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 298  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1340 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1288



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 104  aactcaaactcaaccctatgatagtaaa 131
            |||||||||||||||||||||| |||||
Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505
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>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator,
            complete cds
          Length = 1564

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Minus

                                                                 
Query: 298  cttgttcgtcatcattt-cttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| || ||  | ||||||||||| ||||||||||||||
Sbjct: 1287 cttgttcgtcatcattttctgccagtttaggcaccgcccgagccgtacttctt 1235



 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 104  aactcaaactcaaccctatgatagtaaa 131
            |||||||||||||||||||||| |||||
Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450
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>gb|BT016715.1| Zea mays clone Contig548 mRNA sequence
          Length = 1584

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 296  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||||
Sbjct: 1276 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctt 1223
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>emb|X57556.1|ZMANT1MU Z.mays MANT1 mRNA for adenine nucleotide translocator (also called
            ADP/ATP translocase)
          Length = 1579

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 296  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||||
Sbjct: 1275 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctt 1222
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>gb|AY109420.1| Zea mays CL2269_1 mRNA sequence
          Length = 1883

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 296  ctcttgttcgtcatcatttcttcccctctaggcaccgcctgagccgtacttctt 349
            ||||||||||||||||| | |  || | || |||||||| ||||||||||||||
Sbjct: 1292 ctcttgttcgtcatcatatttctccatttaagcaccgccggagccgtacttctt 1239
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>gb|AC113991.4| Mus musculus chromosome 3, clone RP24-138E17, complete sequence
          Length = 138057

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 288   acagacttctcttgttcgtcatcat 312
             ||||||||||||||||||| |||||
Sbjct: 10958 acagacttctcttgttcgttatcat 10982
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>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence
          Length = 165247

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 288   acagacttctcttgttcgtcatcat 312
             ||||||||||||||||||| |||||
Sbjct: 22002 acagacttctcttgttcgttatcat 21978
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>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12,
             ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3,
             tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene,
             tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19,
             ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An
             d48
          Length = 82868

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   ctggagttcgatgcctccacc 188
             |||||||||||||||||||||
Sbjct: 45484 ctggagttcgatgcctccacc 45504
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    gttcgccagatcctcgaagg 275
              ||||||||||||||||||||
Sbjct: 991526 gttcgccagatcctcgaagg 991545
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>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence
          Length = 193811

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    atgatagtaaatgttttgag 140
              ||||||||||||||||||||
Sbjct: 152272 atgatagtaaatgttttgag 152253
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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
             complete sequence
          Length = 123078

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    catactcgaactcaaactcaaccc 119
             ||||||| ||||||||||||||||
Sbjct: 48909 catactcaaactcaaactcaaccc 48932


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,994,796
Number of Sequences: 3902068
Number of extensions: 2994796
Number of successful extensions: 60835
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 60771
Number of HSP's gapped (non-prelim): 54
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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