ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37d06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AROC_SALCH (Q57LX0) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 32 1.1
2AROC_YERPE (Q8ZD41) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 32 1.1
3AROC_SALTY (P58729) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 32 1.1
4AROC_YERPS (Q668V5) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 31 1.8
5AROC_PHOLL (Q7N299) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 31 1.8
6PFA4_NEUCR (Q7SCY6) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Prot... 30 2.3
7AROC_ERWCT (Q6D2M6) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 30 2.3
8INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1) 30 2.3
95E5_RAT (Q63003) 5E5 antigen 30 3.1
10AROC_SALPA (Q5PCX2) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 30 4.0
11AROC_PSEAE (Q9I344) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 30 4.0
12AROC_SALTI (P16280) Chorismate synthase (EC 4.2.3.5) (5-enolpyru... 30 4.0
13ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disinteg... 29 5.2
14HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated... 29 5.2
15THIC2_METTH (O27617) Probable thiamine biosynthesis protein thiC 2 29 6.8
16UPPS_XANOR (Q5H1E5) Undecaprenyl pyrophosphate synthetase (EC 2.... 29 6.8
17WRK16_ARATH (Q9FL92) Probable WRKY transcription factor 16 (WRKY... 28 8.9

>AROC_SALCH (Q57LX0) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 361

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   +++  H+ L+P+ +  +PG  +  A E VE   +GRH
Sbjct: 277 LGGISSGQHIVAHMALKPTSSITVPGRTINRAGEEVEMITKGRH 320



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>AROC_YERPE (Q8ZD41) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 360

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   + V  H+ L+P+ + ++PG  +    E VE   RGRH
Sbjct: 276 LGGISSGQPVVAHIALKPTSSIMVPGQTINRQGEAVEMVTRGRH 319



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>AROC_SALTY (P58729) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 360

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   +++  H+ L+P+ +  +PG  +  A E VE   +GRH
Sbjct: 276 LGGISSGQHIVAHMALKPTSSITVPGRTINRAGEEVEMITKGRH 319



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>AROC_YERPS (Q668V5) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 361

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   + V  H+ L+P+ + ++PG  +    E VE   RGRH
Sbjct: 277 LGGISSGQPVVAHIALKPTSSIMVPGQTINRQGEAVEIVTRGRH 320



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>AROC_PHOLL (Q7N299) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 361

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   + +  H+ L+P+ + ++PG  +    E VE   RGRH
Sbjct: 277 LGGISSSQPIVAHIALKPTSSIMVPGKTINRQGEEVEMVTRGRH 320



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>PFA4_NEUCR (Q7SCY6) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 4)
          Length = 486

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 364 GPPRA*TLRHCPAPRPPRAGSTRGCGASPPWPAH 465
           GP +A   + C AP+PPRA   R C    P   H
Sbjct: 97  GPQKAKWCKKCDAPKPPRAHHCRHCARCIPRMDH 130



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>AROC_ERWCT (Q6D2M6) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 361

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   + +  HL L+P+ + ++PG  +    E  E   RGRH
Sbjct: 277 LGGISSGQNIVAHLALKPTSSIMVPGKTINRQGEATEMVTRGRH 320



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>INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)|
          Length = 257

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 397 PAPRPPRAGSTRGCGASP 450
           PAPR PRAG T GCGA P
Sbjct: 41  PAPRSPRAG-TAGCGARP 57



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>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 356 SAGEQGCRCARGRAPGAGELVGAEAQVHGQGGR-WAMDA 243
           S GE G    RGR  GAGE      +  G+GGR W  +A
Sbjct: 292 SPGEWGADVPRGRGEGAGEWGSDVPKDRGEGGREWGPEA 330



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>AROC_SALPA (Q5PCX2) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 361

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   +++  H+ L+P+ +  +PG  +    E VE   +GRH
Sbjct: 277 LGGISSGQHIVAHMALKPTSSITVPGRTINRMGEEVEMITKGRH 320



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>AROC_PSEAE (Q9I344) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 363

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   + +  HL L+P+ +   PG  +  A E V+   +GRH
Sbjct: 276 LGGISSGQPIVAHLALKPTSSITTPGRSIDTAGEPVDMITKGRH 319



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>AROC_SALTI (P16280) Chorismate synthase (EC 4.2.3.5)|
           (5-enolpyruvylshikimate-3-phosphate phospholyase)
          Length = 360

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463
           +G +   +++  H+ L+P+ +  +PG  +    E VE   +GRH
Sbjct: 276 LGGISSGQHIVAHMALKPTSSITVPGRTINRMGEEVEMITKGRH 319



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>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase domain 19) (Meltrin beta)
          Length = 920

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 3/94 (3%)
 Frame = +3

Query: 135  PRSWQRAQRRESHQRPLSS**MADASNLT*MCLKSWSVHRPSPP---LTMNLCFGTHQLA 305
            P +  R +R+ES +RP  S  M  A N    CL S    RP PP   L  N   G     
Sbjct: 821  PEAGARIERKESARRPPPSRPMPPAPN----CLLSQDFSRPRPPQKALPANPVPGQRTGP 876

Query: 306  GTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSP 407
             +G           TS +   TS   PP  P  P
Sbjct: 877  RSG----------GTSLLQPPTSGPQPPRPPAVP 900



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>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic|
            nucleotide-gated channel 4 (Hyperpolarization-activated
            cation channel 4) (HAC-4)
          Length = 1175

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/52 (30%), Positives = 20/52 (38%)
 Frame = +3

Query: 255  PSPPLTMNLCFGTHQLAGTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSPA 410
            P+PP T      +H     G        PL T   S + S   PP  P +PA
Sbjct: 882  PTPPTTAGAAGFSHFHRALGGSLSSSDSPLLTPMQSAARSPQQPPPPPGAPA 933



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>THIC2_METTH (O27617) Probable thiamine biosynthesis protein thiC 2|
          Length = 424

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -1

Query: 466 RVPATVGTLHNLECYLHGVAGEQGSAGGFKLEVDRDIALVNKGADALAD 320
           R  +  G   NL   ++   G        +LEVD+ +A V  GADA+ D
Sbjct: 47  RESSPCGIGENLSTKINANIGSSSKMEDIELEVDKALAAVEYGADAVMD 95



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>UPPS_XANOR (Q5H1E5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP|
           synthetase) (Di-trans,poly-cis-decaprenylcistransferase)
           (Undecaprenyl diphosphate synthase) (UDS)
          Length = 258

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 316 HPVPASWWVPKHKFMVKGGDGRW 248
           HPVP    VP+H  ++  G+GRW
Sbjct: 7   HPVPPVADVPRHIAIIMDGNGRW 29



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>WRK16_ARATH (Q9FL92) Probable WRKY transcription factor 16 (WRKY DNA-binding|
           protein 16)
          Length = 1372

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 24/71 (33%), Positives = 31/71 (43%)
 Frame = +3

Query: 243 SVHRPSPPLTMNLCFGTHQLAGTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSPATPCR 422
           S+ +P+    +NL      L+G          PL TS M  STS  NP  L C     C 
Sbjct: 677 SIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKPL-TSLMKISTSYQNPGKLSCLELNDC- 734

Query: 423 *HSRLWSVPTV 455
             SRL S+P +
Sbjct: 735 --SRLRSLPNM 743


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,479,801
Number of Sequences: 219361
Number of extensions: 1512060
Number of successful extensions: 4838
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4819
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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