ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart37d02 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 152 bits (385), Expect = 3e-37 Identities = 78/82 (95%), Positives = 80/82 (97%) Frame = -2 Query: 486 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 307 LESYKSVTMEAMA+AFGVTVDFID ELSRFIAAGKLHCKIDKVA VLETNRPDARNAFYQ Sbjct: 308 LESYKSVTMEAMASAFGVTVDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQ 367 Query: 306 STIKQGDFLLNRIQKLSRVIDL 241 +TIKQGDFLLNRIQKLSRVIDL Sbjct: 368 ATIKQGDFLLNRIQKLSRVIDL 389
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 151 bits (382), Expect = 8e-37 Identities = 76/82 (92%), Positives = 80/82 (97%) Frame = -2 Query: 486 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 307 LESYKSVT+EAMA AFGV+VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDA+NA YQ Sbjct: 306 LESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQ 365 Query: 306 STIKQGDFLLNRIQKLSRVIDL 241 +TIKQGDFLLNRIQKLSRVIDL Sbjct: 366 ATIKQGDFLLNRIQKLSRVIDL 387
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 123 bits (308), Expect = 3e-28 Identities = 60/82 (73%), Positives = 72/82 (87%) Frame = -2 Query: 486 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 307 LESY+S+T+ MA AFGV VDFIDQELSRFIAAG+LHCKIDKV ++ETNRPD++N YQ Sbjct: 308 LESYRSLTLGYMAEAFGVGVDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQ 367 Query: 306 STIKQGDFLLNRIQKLSRVIDL 241 TIK+GD LLNR+QKLSRVI++ Sbjct: 368 ETIKKGDLLLNRVQKLSRVINM 389
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 122 bits (306), Expect = 5e-28 Identities = 57/82 (69%), Positives = 74/82 (90%) Frame = -2 Query: 486 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 307 LESY+S+T++ MA +FGVTV++IDQEL+RFIAAG+LH K+D+V G++ETNRPD +N YQ Sbjct: 308 LESYRSLTLQYMAESFGVTVEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQ 367 Query: 306 STIKQGDFLLNRIQKLSRVIDL 241 +TIKQGD LLNRIQKLSRVI++ Sbjct: 368 ATIKQGDLLLNRIQKLSRVINI 389
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 121 bits (304), Expect = 9e-28 Identities = 59/82 (71%), Positives = 72/82 (87%) Frame = -2 Query: 486 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 307 LESY+S+T+ MA AFGV V+FIDQELSRFIAAG+LHCKIDKV ++ETNRPD++N YQ Sbjct: 308 LESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQ 367 Query: 306 STIKQGDFLLNRIQKLSRVIDL 241 TIK+GD LLNR+QKLSRVI++ Sbjct: 368 ETIKKGDLLLNRVQKLSRVINM 389
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 95.1 bits (235), Expect = 9e-20 Identities = 45/87 (51%), Positives = 66/87 (75%) Frame = -2 Query: 486 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 307 LESY+++++++MAA+FGV+VD+ID++L+ FI KL+C ID+V GV+ TNRPD +N YQ Sbjct: 323 LESYRALSIDSMAASFGVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQ 382 Query: 306 STIKQGDFLLNRIQKLSRVIDL*AFFV 226 +KQGD LLN++QK + AF V Sbjct: 383 EVVKQGDVLLNKLQKYQATVMRGAFKV 409
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 91.3 bits (225), Expect = 1e-18 Identities = 45/81 (55%), Positives = 59/81 (72%) Frame = -2 Query: 486 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 307 L YK+V ++ MA FGV+ FID+EL R IA G+L C+ID V GV+E N D++N Y+ Sbjct: 329 LTPYKTVRIDMMAKDFGVSRAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYK 388 Query: 306 STIKQGDFLLNRIQKLSRVID 244 + IK GD LLNRIQKL+RVI+ Sbjct: 389 AVIKDGDILLNRIQKLARVIN 409
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 89.7 bits (221), Expect = 4e-18 Identities = 41/82 (50%), Positives = 62/82 (75%) Frame = -2 Query: 486 LESYKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQ 307 LESYK++++++MA+AFGV+V F+D +L +FI +L+C ID+V G++ETNRPD +NA Y Sbjct: 342 LESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYH 401 Query: 306 STIKQGDFLLNRIQKLSRVIDL 241 +KQGD LL ++QK + L Sbjct: 402 LLVKQGDGLLTKLQKYGAAVRL 423
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 40.8 bits (94), Expect = 0.002 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -2 Query: 477 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 298 Y S M MAAAF TV ++ EL++ I G ++ +ID + +L D R+ ++ ++ Sbjct: 361 YVSADMHKMAAAFNTTVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSL 420 Query: 297 KQG 289 G Sbjct: 421 LMG 423
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 40.4 bits (93), Expect = 0.003 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -2 Query: 477 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 298 Y S M MAAAF TV ++ EL++ I G ++ +ID + +L D R+ ++ ++ Sbjct: 361 YVSADMHKMAAAFNTTVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSL 420 Query: 297 KQG 289 G Sbjct: 421 LMG 423
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 38.9 bits (89), Expect = 0.007 Identities = 19/64 (29%), Positives = 33/64 (51%) Frame = -2 Query: 477 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 298 + SV + MA AF +V +++EL I ++ +ID +L D RNA +Q + Sbjct: 350 FVSVDLSRMADAFKTSVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVL 409 Query: 297 KQGD 286 + G+ Sbjct: 410 QMGN 413
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.5 bits (88), Expect = 0.010 Identities = 20/77 (25%), Positives = 39/77 (50%) Frame = -2 Query: 477 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 298 Y +TM+ MA ++VD + LS + + K+D++AGV+ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428 Query: 297 KQGDFLLNRIQKLSRVI 247 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.013 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = -2 Query: 477 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 298 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 297 KQGDFLLNRIQKLSRVI 247 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 38.1 bits (87), Expect = 0.013 Identities = 19/77 (24%), Positives = 39/77 (50%) Frame = -2 Query: 477 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 298 Y +TM+ MA ++VD + LS + + K+D++AG++ RP N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 297 KQGDFLLNRIQKLSRVI 247 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 36.2 bits (82), Expect = 0.048 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -2 Query: 477 YKSVTMEAMAAAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTI 298 Y S M MA AF +V ++ E+ + I G++ +ID +L D RN+ ++ + Sbjct: 410 YMSADMHKMAMAFNSSVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERAL 469 Query: 297 KQG 289 G Sbjct: 470 IMG 472
>CRT_CLOAB (P52046) 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) (Crotonase)| Length = 261 Score = 30.4 bits (67), Expect = 2.6 Identities = 17/42 (40%), Positives = 25/42 (59%) Frame = -2 Query: 372 KIDKVAGVLETNRPDARNAFYQSTIKQGDFLLNRIQKLSRVI 247 K KVA V+ NRP A NA T+K+ D+++ I+ S V+ Sbjct: 10 KEGKVA-VVTINRPKALNALNSDTLKEMDYVIGEIENDSEVL 50
>TRME_PHOLL (Q7MAX1) tRNA modification GTPase trmE| Length = 454 Score = 30.0 bits (66), Expect = 3.4 Identities = 17/47 (36%), Positives = 28/47 (59%) Frame = -2 Query: 429 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDARNAFYQSTIKQG 289 +DF D+E+ F++ GK+ K+D+V LE R AR S +++G Sbjct: 174 IDFPDEEID-FLSDGKIEAKLDEVIVELERVRSQARQG---SLLREG 216
>TTDN1_MOUSE (Q9D011) TTD nonphotosensitive 1 protein homolog| Length = 178 Score = 28.9 bits (63), Expect = 7.6 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +3 Query: 276 SAGSLPA*WSTGKRHSVHQVGSSPGHQQPY 365 S G P +S S HQ G SPG QQ Y Sbjct: 81 SPGGYPGSYSRSPAGSQHQFGYSPGQQQTY 110 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,594,929 Number of Sequences: 219361 Number of extensions: 1411775 Number of successful extensions: 3262 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3198 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3261 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3362826254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
