ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
113S1_FAGES (O23878) 13S globulin seed storage protein 1 precurso... 30 3.2
2YL185_MIMIV (Q5URB5) Hypothetical protein L185 28 9.2
3CBX4_MOUSE (O55187) Chromobox protein homolog 4 (Polycomb 2 homo... 28 9.2

>13S1_FAGES (O23878) 13S globulin seed storage protein 1 precursor|
           (Legumin-like protein 1) [Contains: 13S globulin seed
           storage protein 1 acidic chain; 13S globulin seed
           storage protein 1 basic chain]
          Length = 565

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 100 PDRVTMLNVEK*AITKINTFQLA*LHFTKRSANHIYMY*YQVVLTRRQAQ*HRT--ILQN 273
           P R  + N     I  +N+  L  L F + SA H+ +Y   ++  R     H    + + 
Sbjct: 395 PSRADVFNPRAGRINTVNSNNLPILEFIQLSAQHVVLYKNAILGPRWNLNAHSALYVTRG 454

Query: 274 EGQVEINTDGG 306
           EG+V++  D G
Sbjct: 455 EGRVQVVGDEG 465



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>YL185_MIMIV (Q5URB5) Hypothetical protein L185|
          Length = 392

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 357 DLRQDLLFKDGIILLQLDHGLLTKSINLVIILL 455
           D   DL+F + +ILL  ++G    +I++V ILL
Sbjct: 147 DTNNDLIFNNDLILLIFEYGFFEDTIDVVKILL 179



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>CBX4_MOUSE (O55187) Chromobox protein homolog 4 (Polycomb 2 homolog) (Pc2)|
           (MPc2)
          Length = 551

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 338 FSKHPSGSSTGPSLQRWHNTSSTRSWPSHQKHQPCHHTSHTELG 469
           F + P   +T P L  W    S+   P+H  H   HH  H  +G
Sbjct: 356 FGEQPLQLTTKPDLLAWDPARSSHP-PAHHHHHHHHHHHHHTVG 398


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,488,922
Number of Sequences: 219361
Number of extensions: 1115906
Number of successful extensions: 2863
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2861
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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