ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY789531.1| Oryza sativa (indica cultivar-group) prenylated R... 200 3e-48
2gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome... 200 3e-48
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
4dbj|AK106175.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
5dbj|AK104118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
6dbj|AK060006.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
8dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
9dbj|AK108526.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
10dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
12gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
13gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
14emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa... 64 4e-07
15emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa... 64 4e-07
16emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa... 64 4e-07
17gb|AY110204.1| Zea mays CL16631_1 mRNA sequence 60 7e-06
18emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete s... 48 0.026
19gb|AE004692.1| Pseudomonas aeruginosa PAO1, section 253 of 529 o... 44 0.41
20gb|DP000017.1| Sus scrofa target 1 genomic scaffold 42 1.6
21gb|AC146932.3| Sus scrofa clone RP44-244C10, complete sequence 42 1.6
22emb|CR974572.21| Pig DNA sequence from clone CH242-200F24 on chr... 42 1.6
23emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 ... 42 1.6
24emb|CR956415.12| Pig DNA sequence from clone PigE-223M7 on chrom... 42 1.6
25emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in ... 42 1.6
26emb|CR956370.6| Pig DNA sequence from clone CH242-181F19 on chro... 42 1.6
27emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chr... 42 1.6
28emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chrom... 42 1.6
29emb|AL731563.9| Human DNA sequence from clone RP11-344N10 on chr... 42 1.6
30emb|AL591420.5| Zebrafish DNA sequence from clone BUSM1-221H6 in... 42 1.6
31gb|AC129961.2| Sus scrofa, clone RP44-428N16, complete sequence 42 1.6
32gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, comp... 42 1.6
33gb|AC158442.3| Sus scrofa clone RP44-406A19, complete sequence 42 1.6
34emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complet... 42 1.6
35gb|AC097586.3| Sus scrofa clone RP44-394E19, complete sequence 42 1.6
36gb|DQ020484.1| Sus scrofa clone BAC KNP_217F2, complete sequence 42 1.6
37emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in ... 42 1.6
38emb|CR956385.13| Pig DNA sequence from clone CH242-177A17 on chr... 42 1.6
39emb|CT009664.17| Pig DNA sequence from clone CH242-113D8 on chro... 42 1.6
40emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chrom... 42 1.6
41gb|AY663543.1| Sus scrofa albumin gene, complete cds 40 6.4
42ref|XM_421595.1| PREDICTED: Gallus gallus similar to cadherin-re... 40 6.4
43gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein ... 40 6.4
44gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
45gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic ... 40 6.4
46ref|XM_883518.1| Leishmania major strain Friedlin chloride chann... 40 6.4
47emb|CR956431.10| Pig DNA sequence from clone PigE-60M9 on chromo... 40 6.4
48emb|CR956640.5| Pig DNA sequence from clone CH242-155M9 on chrom... 40 6.4
49emb|CR974432.6| Pig DNA sequence from clone PigE-204L22 on chrom... 40 6.4
50emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 40 6.4
51emb|CR956424.18| Pig DNA sequence from clone PigE-234J24 on chro... 40 6.4
52emb|CR956369.6| Pig DNA sequence from clone PigI-416G4 on chromo... 40 6.4
53emb|CR974434.12| Pig DNA sequence from clone CH242-241E19 on chr... 40 6.4
54emb|CR974452.4| Pig DNA sequence from clone PigE-201A17 on chrom... 40 6.4
55emb|CR956391.5| Pig DNA sequence from clone PigE-133M12 on chrom... 40 6.4
56emb|CR956422.6| Pig DNA sequence from clone PigE-93N11 on chromo... 40 6.4
57emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chrom... 40 6.4
58gb|AC091623.2| Sus scrofa clone RP44-183E24, complete sequence 40 6.4
59gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, com... 40 6.4
60gb|AC091403.3| Sus scrofa clone RP44-431F19, complete sequence 40 6.4
61gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 6.4
62gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence 40 6.4
63emb|AL034408.2|HS710L4 Human DNA sequence from clone RP4-710L4 o... 40 6.4
64gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 40 6.4
65emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic regi... 40 6.4
66emb|AL773562.15| Pig DNA sequence from clone XX-649D6, complete ... 40 6.4
67gb|AC165176.2| Zea mays clone ZMMBBb-177G21, complete sequence 40 6.4
68gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.4
69dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, ... 40 6.4
70dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31... 40 6.4
71dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.4
72gb|AC093554.1| Leishmania donovani clone XX-BNI_Clos13.12, compl... 40 6.4
73gb|DQ072198.1| Uncultured bacterium clone M60-134 putative dissi... 40 6.4
74gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.4
75gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.4
76dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
77dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
78gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Canc... 40 6.4
79dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
80dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
81emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, comple... 40 6.4
82dbj|AB106555.1| Sus scrofa IL-16 gene for interleukin 16, comple... 40 6.4
83gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.4
84emb|CT009503.7| Pig DNA sequence from clone CH242-137E23 on chro... 40 6.4
85emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chro... 40 6.4
86emb|AJ009912.1|SSC9912 Sus scrofa plp gene 40 6.4 
>gb|AY789531.1| Oryza sativa (indica cultivar-group) prenylated Rab acceptor
           protein 1 (Pra1) mRNA, complete cds
          Length = 960

 Score =  200 bits (101), Expect = 3e-48
 Identities = 157/175 (89%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                       
Query: 304 gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 360
           ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 765 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 706

                                                                       
Query: 361 gaaggagagcagcccctgagccgcgctgttgccactggctgcgtcggattcgtccaggaa 420
           |||||| || || ||||| |||||||||||||| ||||| ||||| |  ||||| |||||
Sbjct: 705 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtcagcgtcgtcgaggaa 646

                                                                  
Query: 421 gaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccgccgacg 475
           ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 645 gaggtcctcgggcatgcggcacgcgccgtggacggcgacgatggccccgccgacg 591
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>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01,
             complete sequence
          Length = 146432

 Score =  200 bits (101), Expect = 3e-48
 Identities = 157/175 (89%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                         
Query: 304   gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 360
             ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 72057 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 71998

                                                                         
Query: 361   gaaggagagcagcccctgagccgcgctgttgccactggctgcgtcggattcgtccaggaa 420
             |||||| || || ||||| |||||||||||||| ||||| ||||| |  ||||| |||||
Sbjct: 71997 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtcagcgtcgtcgaggaa 71938

                                                                    
Query: 421   gaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccgccgacg 475
             ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 71937 gaggtcctcgggcatgcggcacgcgccgtggacggcgacgatggccccgccgacg 71883
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  200 bits (101), Expect = 3e-48
 Identities = 157/175 (89%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                            
Query: 304      gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 360
                ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 23140282 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 23140223

                                                                            
Query: 361      gaaggagagcagcccctgagccgcgctgttgccactggctgcgtcggattcgtccaggaa 420
                |||||| || || ||||| |||||||||||||| ||||| ||||| |  ||||| |||||
Sbjct: 23140222 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtcagcgtcgtcgaggaa 23140163

                                                                       
Query: 421      gaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccgccgacg 475
                ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 23140162 gaggtcctcgggcatgcggcacgcgccgtggacggcgacgatggccccgccgacg 23140108
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>dbj|AK106175.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C07, full
           insert sequence
          Length = 985

 Score =  200 bits (101), Expect = 3e-48
 Identities = 157/175 (89%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                       
Query: 304 gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 360
           ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 787 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 728

                                                                       
Query: 361 gaaggagagcagcccctgagccgcgctgttgccactggctgcgtcggattcgtccaggaa 420
           |||||| || || ||||| |||||||||||||| ||||| ||||| |  ||||| |||||
Sbjct: 727 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtcagcgtcgtcgaggaa 668

                                                                  
Query: 421 gaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccgccgacg 475
           ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 667 gaggtcctcgggcatgcggcacgcgccgtggacggcgacgatggccccgccgacg 613
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>dbj|AK104118.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-A05, full
           insert sequence
          Length = 986

 Score =  200 bits (101), Expect = 3e-48
 Identities = 157/175 (89%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                       
Query: 304 gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 360
           ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 788 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 729

                                                                       
Query: 361 gaaggagagcagcccctgagccgcgctgttgccactggctgcgtcggattcgtccaggaa 420
           |||||| || || ||||| |||||||||||||| ||||| ||||| |  ||||| |||||
Sbjct: 728 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtcagcgtcgtcgaggaa 669

                                                                  
Query: 421 gaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccgccgacg 475
           ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 668 gaggtcctcgggcatgcggcacgcgccgtggacggcgacgatggccccgccgacg 614
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>dbj|AK060006.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-B06, full
           insert sequence
          Length = 1097

 Score =  200 bits (101), Expect = 3e-48
 Identities = 157/175 (89%), Gaps = 3/175 (1%)
 Strand = Plus / Minus

                                                                       
Query: 304 gaagcctaccagatctcgtcgcctgccgcc---tcaaaccctagatccgggtgccccgag 360
           ||||||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||
Sbjct: 796 gaagcctaccagatctcgtcgcccgccgccgcctcaaaccctagatccgggcgccccgag 737

                                                                       
Query: 361 gaaggagagcagcccctgagccgcgctgttgccactggctgcgtcggattcgtccaggaa 420
           |||||| || || ||||| |||||||||||||| ||||| ||||| |  ||||| |||||
Sbjct: 736 gaaggacaggagaccctgggccgcgctgttgccgctggcggcgtcagcgtcgtcgaggaa 677

                                                                  
Query: 421 gaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccgccgacg 475
           ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct: 676 gaggtcctcgggcatgcggcacgcgccgtggacggcgacgatggccccgccgacg 622
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                               
Query: 328      gccgcctcaaaccctagatccgggtgccccgaggaaggagagcagcc 374
                ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 35401183 gccgcatcaaaccccagatccgggcgccccgaggaaggagagcagcc 35401229



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 410      tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
                ||||| |||||||||||||| |||| |||||| ||||||||  |||| ||||| ||||||
Sbjct: 35401265 tcgtcaaggaagaggtcctcaggcacgcggaatgcgccgtgcacggcaacgatcgcgccg 35401324

                      
Query: 470      ccgacg 475
                ||||||
Sbjct: 35401325 ccgacg 35401330



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 329      ccgcctcaaaccctagatcc 348
                ||||||||||||||||||||
Sbjct: 17421487 ccgcctcaaaccctagatcc 17421506
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>dbj|AP003734.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1088C09
          Length = 154084

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Plus

                                                            
Query: 328   gccgcctcaaaccctagatccgggtgccccgaggaaggagagcagcc 374
             ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 25132 gccgcatcaaaccccagatccgggcgccccgaggaaggagagcagcc 25178



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                         
Query: 410   tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
             ||||| |||||||||||||| |||| |||||| ||||||||  |||| ||||| ||||||
Sbjct: 25214 tcgtcaaggaagaggtcctcaggcacgcggaatgcgccgtgcacggcaacgatcgcgccg 25273

                   
Query: 470   ccgacg 475
             ||||||
Sbjct: 25274 ccgacg 25279
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>dbj|AK108526.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-B09, full
           insert sequence
          Length = 792

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 44/47 (93%)
 Strand = Plus / Minus

                                                          
Query: 328 gccgcctcaaaccctagatccgggtgccccgaggaaggagagcagcc 374
           ||||| |||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 473 gccgcatcaaaccccagatccgggcgccccgaggaaggagagcagcc 427



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 410 tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
           ||||| |||||||||||||| |||| |||||| ||||||||  |||| ||||| ||||||
Sbjct: 391 tcgtcaaggaagaggtcctcaggcacgcggaatgcgccgtgcacggcaacgatcgcgccg 332

                 
Query: 470 ccgacg 475
           ||||||
Sbjct: 331 ccgacg 326
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 410    tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
              ||||| |||||||||||||| || |||||||| |||||||| |||  |||||||||| ||
Sbjct: 414545 tcgtcgaggaagaggtcctccgggatgcggaatgcgccgtgcgcgcagacgatggcggcg 414486

                  
Query: 470    ccga 473
              ||||
Sbjct: 414485 ccga 414482
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 410    tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
              ||||| ||||||||||||||||| |||||||| |||||||| |||  ||| |||||| ||
Sbjct: 356278 tcgtcgaggaagaggtcctcggggatgcggaatgcgccgtgcgcgcagacaatggcggcg 356219

                  
Query: 470    ccga 473
              ||||
Sbjct: 356218 ccga 356215
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 410    tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
              ||||| ||||||||||||||||| |||||||| |||||||| |||  ||| |||||| ||
Sbjct: 356278 tcgtcgaggaagaggtcctcggggatgcggaatgcgccgtgcgcgcagacaatggcggcg 356219

                  
Query: 470    ccga 473
              ||||
Sbjct: 356218 ccga 356215
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 410    tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
              ||||| |||||||||||||| || |||||||| |||||||| |||  |||||||||| ||
Sbjct: 414545 tcgtcgaggaagaggtcctccgggatgcggaatgcgccgtgcgcgcagacgatggcggcg 414486

                  
Query: 470    ccga 473
              ||||
Sbjct: 414485 ccga 414482
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>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 152222

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                          
Query: 410    tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
              ||||| |||||||||||||| || |||||||| |||||||| |||  |||||||||| ||
Sbjct: 147596 tcgtcgaggaagaggtcctccgggatgcggaatgcgccgtgcgcgcagacgatggcggcg 147537

                  
Query: 470    ccga 473
              ||||
Sbjct: 147536 ccga 147533
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>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 164143

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                         
Query: 410   tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
             ||||| ||||||||||||||||| |||||||| |||||||| |||  ||| |||||| ||
Sbjct: 63596 tcgtcgaggaagaggtcctcggggatgcggaatgcgccgtgcgcgcagacaatggcggcg 63537

                 
Query: 470   ccga 473
             ||||
Sbjct: 63536 ccga 63533
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>emb|BX000492.1|CNS08CDI Oryza sativa chromosome 12, . BAC OSJNBa0024J08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141089

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                          
Query: 410    tcgtccaggaagaggtcctcgggcatgcggaacgcgccgtgggcggcgacgatggcgccg 469
              ||||| |||||||||||||| || |||||||| |||||||| |||  |||||||||| ||
Sbjct: 132227 tcgtcgaggaagaggtcctccgggatgcggaatgcgccgtgcgcgcagacgatggcggcg 132286

                  
Query: 470    ccga 473
              ||||
Sbjct: 132287 ccga 132290
to top
>gb|AY110204.1| Zea mays CL16631_1 mRNA sequence
          Length = 878

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 84/102 (82%)
 Strand = Plus / Plus

                                                                       
Query: 274 tccagtttaagacgaacttctcgcgcccaggaagcctaccagatctcgtcgcctgccgcc 333
           ||||| |||| |||||| | ||| ||||| | | |||||||||||| | |  | ||||||
Sbjct: 247 tccagcttaatacgaacctgtcgagcccaaggaccctaccagatcttgccctccgccgcc 306

                                                     
Query: 334 tcaaaccctagatccgggtgccccgaggaaggagagcagccc 375
           |||||||| |||||||||||| || ||||| || ||||||||
Sbjct: 307 tcaaaccccagatccgggtgcgccaaggaatgaaagcagccc 348



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                  
Query: 410 tcgtccaggaagaggtcctcgggcatgcggaacgcgccg 448
           ||||| |||||||||||||| ||||  ||||||||||||
Sbjct: 383 tcgtcgaggaagaggtcctccggcacccggaacgcgccg 421
to top
>emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete sequence
          Length = 165790

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 242    cacagctacagcaacatcagatcc 265
              ||||||||||||||||||||||||
Sbjct: 122471 cacagctacagcaacatcagatcc 122448
to top
>gb|AE004692.1| Pseudomonas aeruginosa PAO1, section 253 of 529 of the complete
            genome
          Length = 10256

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 434  atgcggaacgcgccgtgggcgg 455
            ||||||||||||||||||||||
Sbjct: 7214 atgcggaacgcgccgtgggcgg 7193
to top
>gb|DP000017.1| Sus scrofa target 1 genomic scaffold
          Length = 1471440

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 169516 cacagccacagcaacatcagatcca 169540
to top
>gb|AC146932.3| Sus scrofa clone RP44-244C10, complete sequence
          Length = 130764

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 242   cacagctacagcaacatcagatcca 266
             |||||| ||||||||||||||||||
Sbjct: 58183 cacagccacagcaacatcagatcca 58207
to top
>emb|CR974572.21| Pig DNA sequence from clone CH242-200F24 on chromosome 17, complete
             sequence
          Length = 137431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 242   cacagctacagcaacatcagatcca 266
             |||||| ||||||||||||||||||
Sbjct: 30136 cacagccacagcaacatcagatcca 30160
to top
>emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 in linkage group 7,
              complete sequence
          Length = 208436

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    tggaactcatgagagaaaatt 146
              |||||||||||||||||||||
Sbjct: 117227 tggaactcatgagagaaaatt 117207
to top
>emb|CR956415.12| Pig DNA sequence from clone PigE-223M7 on chromosome 6, complete sequence
          Length = 209049

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 126777 cacagccacagcaacatcagatcca 126753
to top
>emb|CR931785.6| Zebrafish DNA sequence from clone DKEY-230N5 in linkage group 7, complete
              sequence
          Length = 196531

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    tggaactcatgagagaaaatt 146
              |||||||||||||||||||||
Sbjct: 137355 tggaactcatgagagaaaatt 137335
to top
>emb|CR956370.6| Pig DNA sequence from clone CH242-181F19 on chromosome 7, complete
              sequence
          Length = 178646

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 103902 cacagcaacagcaacatcagatcca 103926
to top
>emb|CR974431.11| Pig DNA sequence from clone CH242-511J12 on chromosome 17, complete
             sequence
          Length = 207434

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 242   cacagctacagcaacatcagatcca 266
             |||||||||||||||| ||||||||
Sbjct: 91940 cacagctacagcaacagcagatcca 91964
to top
>emb|CR956632.4| Pig DNA sequence from clone CH242-197B5 on chromosome 7, complete
             sequence
          Length = 186089

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 241   gcacagctacagcaacatcagatcc 265
             ||||||||||||||||| |||||||
Sbjct: 80479 gcacagctacagcaacaccagatcc 80455
to top
>emb|AL731563.9| Human DNA sequence from clone RP11-344N10 on chromosome 10 Contains
            the P4HA1 gene for procollagen-proline, 2-oxoglutarate
            4-dioxygenase (proline 4-hydroxylase) alpha polypeptide
            I, a novel gene, a novel pseudogene, a ribosomal protein
            L17 (RPL17) pseudogene and a CpG island, complete
            sequence
          Length = 129559

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 58   taaacatcatacatcatgcat 78
            |||||||||||||||||||||
Sbjct: 1772 taaacatcatacatcatgcat 1752
to top
>emb|AL591420.5| Zebrafish DNA sequence from clone BUSM1-221H6 in linkage group 7
             Contains three genes for novel immune-type receptors
             (nitr), complete sequence
          Length = 51019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   tggaactcatgagagaaaatt 146
             |||||||||||||||||||||
Sbjct: 34056 tggaactcatgagagaaaatt 34076
to top
>gb|AC129961.2| Sus scrofa, clone RP44-428N16, complete sequence
          Length = 154348

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 146834 cacagccacagcaacatcagatcca 146810
to top
>gb|AC069548.6| Homo sapiens chromosome 10 clone RP11-522H2, complete sequence
          Length = 131909

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 58  taaacatcatacatcatgcat 78
           |||||||||||||||||||||
Sbjct: 229 taaacatcatacatcatgcat 249
to top
>gb|AC158442.3| Sus scrofa clone RP44-406A19, complete sequence
          Length = 173956

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 169779 cacagccacagcaacatcagatcca 169803
to top
>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 149774 cacagccacagcaacatcagatcca 149750



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 22649 cacagccacagcaacatcagatcc 22626
to top
>gb|AC097586.3| Sus scrofa clone RP44-394E19, complete sequence
          Length = 174554

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 170577 cacagccacagcaacatcagatcca 170601
to top
>gb|DQ020484.1| Sus scrofa clone BAC KNP_217F2, complete sequence
          Length = 170283

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 102396 cacagccacagcaacatcagatcca 102372
to top
>emb|AL954849.14| Zebrafish DNA sequence from clone DKEY-7N10 in linkage group 7,
             complete sequence
          Length = 162939

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 126   tggaactcatgagagaaaatt 146
             |||||||||||||||||||||
Sbjct: 34177 tggaactcatgagagaaaatt 34197
to top
>emb|CR956385.13| Pig DNA sequence from clone CH242-177A17 on chromosome 6, complete
              sequence
          Length = 182211

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 126007 cacagccacagcaacatcagatcca 126031



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 242   cacagctacagcaacatcagatcca 266
             |||||| ||||||||||||||||||
Sbjct: 12545 cacagccacagcaacatcagatcca 12521
to top
>emb|CT009664.17| Pig DNA sequence from clone CH242-113D8 on chromosome 7, complete
              sequence
          Length = 182046

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 139317 cacagccacagcaacatcagatcca 139341



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 72240 cacagccacagcaacatcagatcc 72217
to top
>emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chromosome 6, complete sequence
          Length = 174170

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 242    cacagctacagcaacatcagatcca 266
              |||||| ||||||||||||||||||
Sbjct: 124499 cacagccacagcaacatcagatcca 124475
to top
>gb|AY663543.1| Sus scrofa albumin gene, complete cds
          Length = 35317

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||||||||||||| |||||||
Sbjct: 16394 cacagctacagcaacaccagatcc 16417
to top
>ref|XM_421595.1| PREDICTED: Gallus gallus similar to cadherin-related 23 protein
             (LOC423718), mRNA
          Length = 16824

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 357   cgaggaaggagagcagcccc 376
             ||||||||||||||||||||
Sbjct: 10976 cgaggaaggagagcagcccc 10995
to top
>gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein gene, exons 1 through
             64 and complete cds
          Length = 153745

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   acagctacagcaacatcagatcca 266
             |||||||||||||| |||||||||
Sbjct: 42256 acagctacagcaacgtcagatcca 42279
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 453      cggcgacgatggcgccgccg 472
                ||||||||||||||||||||
Sbjct: 30060418 cggcgacgatggcgccgccg 30060399
to top
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete
              sequence
          Length = 163972

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    cggcgacgatggcgccgccg 472
              ||||||||||||||||||||
Sbjct: 163627 cggcgacgatggcgccgccg 163646
to top
>ref|XM_883518.1| Leishmania major strain Friedlin chloride channel protein (L8032.03)
            partial mRNA
          Length = 3537

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 456  cgacgatggcgccgccgacg 475
            ||||||||||||||||||||
Sbjct: 2142 cgacgatggcgccgccgacg 2161
to top
>emb|CR956431.10| Pig DNA sequence from clone PigE-60M9 on chromosome 7, complete sequence
          Length = 206517

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 242    cacagctacagcaacatcagatcc 265
              |||||||||||||||| |||||||
Sbjct: 116642 cacagctacagcaacaccagatcc 116619
to top
>emb|CR956640.5| Pig DNA sequence from clone CH242-155M9 on chromosome 17, complete
             sequence
          Length = 182043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 13420 cacagccacagcaacatcagatcc 13443
to top
>emb|CR974432.6| Pig DNA sequence from clone PigE-204L22 on chromosome 6, complete
              sequence
          Length = 159182

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 242    cacagctacagcaacatcagatcc 265
              |||||| |||||||||||||||||
Sbjct: 158529 cacagccacagcaacatcagatcc 158552
to top
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 456    cgacgatggcgccgccgacg 475
              ||||||||||||||||||||
Sbjct: 161384 cgacgatggcgccgccgacg 161365
to top
>emb|CR956424.18| Pig DNA sequence from clone PigE-234J24 on chromosome 6, complete
             sequence
          Length = 118731

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 84296 cacagccacagcaacatcagatcc 84273
to top
>emb|CR956369.6| Pig DNA sequence from clone PigI-416G4 on chromosome 7, complete
            sequence
          Length = 140162

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 242  cacagctacagcaacatcagatcc 265
            |||||||||||||||| |||||||
Sbjct: 5075 cacagctacagcaacaccagatcc 5052
to top
>emb|CR974434.12| Pig DNA sequence from clone CH242-241E19 on chromosome 7, complete
            sequence
          Length = 186072

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 242  cacagctacagcaacatcagatcc 265
            |||||| |||||||||||||||||
Sbjct: 3748 cacagccacagcaacatcagatcc 3771
to top
>emb|CR974452.4| Pig DNA sequence from clone PigE-201A17 on chromosome 6, complete
             sequence
          Length = 84444

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 83098 cacagccacagcaacatcagatcc 83075
to top
>emb|CR956391.5| Pig DNA sequence from clone PigE-133M12 on chromosome 7, complete
             sequence
          Length = 168012

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             ||||||| ||||||||||||||||
Sbjct: 94616 cacagctgcagcaacatcagatcc 94593
to top
>emb|CR956422.6| Pig DNA sequence from clone PigE-93N11 on chromosome 6, complete
             sequence
          Length = 184430

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 46385 cacagccacagcaacatcagatcc 46408
to top
>emb|CR956386.6| Pig DNA sequence from clone CH242-152A8 on chromosome 17, complete
              sequence
          Length = 197576

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 242    cacagctacagcaacatcagatcc 265
              |||||| |||||||||||||||||
Sbjct: 146476 cacagccacagcaacatcagatcc 146453
to top
>gb|AC091623.2| Sus scrofa clone RP44-183E24, complete sequence
          Length = 200062

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||||||||||||| |||||||
Sbjct: 12966 cacagctacagcaacaccagatcc 12943
to top
>gb|AC116713.8| Mus musculus chromosome 9, clone RP23-118M23, complete sequence
          Length = 275731

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 243   acagctacagcaacatcagatcca 266
             ||||||||||||| ||||||||||
Sbjct: 72190 acagctacagcaaaatcagatcca 72167
to top
>gb|AC091403.3| Sus scrofa clone RP44-431F19, complete sequence
          Length = 80906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 76464 cacagccacagcaacatcagatcc 76487
to top
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 452     gcggcgacgatggcgccgccgacg 475
               |||||||||||| |||||||||||
Sbjct: 1885737 gcggcgacgatgacgccgccgacg 1885714
to top
>gb|AC091402.2| Sus scrofa clone RP44-363K13, complete sequence
          Length = 164663

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 242  cacagctacagcaacatcagatcc 265
            |||||| |||||||||||||||||
Sbjct: 4106 cacagccacagcaacatcagatcc 4129
to top
>emb|AL034408.2|HS710L4 Human DNA sequence from clone RP4-710L4 on chromosome Xq11.2-12
             Contains the 5' end of the MTMR8 gene for myotubularin
             related protein 8, a SHC (Src homology 2 domain
             containing) transforming protein 1 (SHC1) pseudogene and a
             CpG island, complete sequence
          Length = 129849

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 305   aagcctaccagatctcgtcgcctg 328
             |||||||||||||||| |||||||
Sbjct: 24964 aagcctaccagatctcctcgcctg 24987
to top
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 453   cggcgacgatggcgccgccg 472
             ||||||||||||||||||||
Sbjct: 47333 cggcgacgatggcgccgccg 47352
to top
>emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic region, haplotype H01, clone BAC
            207G8
          Length = 152211

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 242  cacagctacagcaacatcagatcc 265
            |||||| |||||||||||||||||
Sbjct: 4115 cacagccacagcaacatcagatcc 4138
to top
>emb|AL773562.15| Pig DNA sequence from clone XX-649D6, complete sequence
          Length = 127265

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 242    cacagctacagcaacatcagatcc 265
              |||||| |||||||||||||||||
Sbjct: 103746 cacagccacagcaacatcagatcc 103769
to top
>gb|AC165176.2| Zea mays clone ZMMBBb-177G21, complete sequence
          Length = 176679

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 453    cggcgacgatggcgccgccg 472
              ||||||||||||||||||||
Sbjct: 154039 cggcgacgatggcgccgccg 154020
to top
>gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 184
            of 460 of the complete genome
          Length = 11910

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 387  tgttgccactggctgcgtcg 406
            ||||||||||||||||||||
Sbjct: 8281 tgttgccactggctgcgtcg 8262
to top
>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             ||||||| ||||||||||||||||
Sbjct: 93665 cacagctgcagcaacatcagatcc 93688
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>dbj|AB158487.1| Sus scrofa PPP1R11, ZNRD1, RNF39, TRIM10, TRIM31, MOG, TRIM15, KRAB,
             TRIM40 genes, complete cds
          Length = 143480

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 92467 cacagccacagcaacatcagatcc 92490
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 449     tgggcggcgacgatggcgcc 468
               ||||||||||||||||||||
Sbjct: 4686931 tgggcggcgacgatggcgcc 4686912
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>gb|AC093554.1| Leishmania donovani clone XX-BNI_Clos13.12, complete sequence
          Length = 33494

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   cgtgggcggcgacgatggcg 466
             ||||||||||||||||||||
Sbjct: 22747 cgtgggcggcgacgatggcg 22728
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>gb|DQ072198.1| Uncultured bacterium clone M60-134 putative dissimilatory nitrite
           reductase (nirS) gene, partial cds
          Length = 851

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 311 accagatctcgtcgcctgcc 330
           ||||||||||||||||||||
Sbjct: 747 accagatctcgtcgcctgcc 728
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 387     tgttgccactggctgcgtcg 406
               ||||||||||||||||||||
Sbjct: 3008863 tgttgccactggctgcgtcg 3008882
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 452     gcggcgacgatggcgccgcc 471
               ||||||||||||||||||||
Sbjct: 2264046 gcggcgacgatggcgccgcc 2264065
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 453      cggcgacgatggcgccgccg 472
                ||||||||||||||||||||
Sbjct: 30151840 cggcgacgatggcgccgccg 30151821
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 453      cggcgacgatggcgccgccg 472
                ||||||||||||||||||||
Sbjct: 11486610 cggcgacgatggcgccgccg 11486591
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>gb|AC022336.12| Homo sapiens 3 BAC RP11-71H17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   tccagggcaactccagtttaagac 286
             ||||||||||||||||||| ||||
Sbjct: 84923 tccagggcaactccagttttagac 84946
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>dbj|AP003144.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0507H06
          Length = 136351

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   ccgcctcaaaccctagatcc 348
             ||||||||||||||||||||
Sbjct: 74879 ccgcctcaaaccctagatcc 74898
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>dbj|AP005534.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0030M21
          Length = 155970

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   cggcgacgatggcgccgccg 472
             ||||||||||||||||||||
Sbjct: 69102 cggcgacgatggcgccgccg 69083
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>emb|BX296515.11| Pig DNA sequence from clone PigE-121D21, complete sequence
          Length = 179691

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||| |||||||||||||||||
Sbjct: 66625 cacagccacagcaacatcagatcc 66602
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>dbj|AB106555.1| Sus scrofa IL-16 gene for interleukin 16, complete cds
          Length = 20252

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||||||||||||| |||||||
Sbjct: 13478 cacagctacagcaacaccagatcc 13501
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 451     ggcggcgacgatggcgccgc 470
               ||||||||||||||||||||
Sbjct: 1000870 ggcggcgacgatggcgccgc 1000889
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>emb|CT009503.7| Pig DNA sequence from clone CH242-137E23 on chromosome 7, complete
              sequence
          Length = 222099

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 242    cacagctacagcaacatcagatcc 265
              |||||| |||||||||||||||||
Sbjct: 172466 cacagccacagcaacatcagatcc 172443
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>emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chromosome 4, complete
              sequence
          Length = 177720

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 242    cacagctacagcaacatcagatcc 265
              |||||||||||||||| |||||||
Sbjct: 162939 cacagctacagcaacaccagatcc 162962
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>emb|AJ009912.1|SSC9912 Sus scrofa plp gene
          Length = 20957

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 242   cacagctacagcaacatcagatcc 265
             |||||||||||||||| |||||||
Sbjct: 10742 cacagctacagcaacaccagatcc 10719


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,702,144
Number of Sequences: 3902068
Number of extensions: 3702144
Number of successful extensions: 72429
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71556
Number of HSP's gapped (non-prelim): 866
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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