ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart37c07 |
|---|---|
| Clone Library Name | barley_pub |
>RL3_ORYSA (P35684) 60S ribosomal protein L3| Length = 388 Score = 207 bits (528), Expect = 1e-53 Identities = 100/108 (92%), Positives = 103/108 (95%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 MNKKVYKIGK GQE+H A TEFDRTEKDITPMGGFPHYGVVK DYLMIKGCCVGPKKRVV Sbjct: 280 MNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVV 339 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LRQSLLKQTSRLALEEIKLKF+DTSSKFGHGRFQTTDEKQRF+GKLK Sbjct: 340 TLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 387
>RL3B_ARATH (P22738) 60S ribosomal protein L3| Length = 389 Score = 188 bits (477), Expect = 9e-48 Identities = 86/106 (81%), Positives = 97/106 (91%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 MNKKVY++GKVGQETH A TE+DRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVV Sbjct: 280 MNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVV 339 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGK 218 LRQ+LLKQTSRLA+EEIKLKF+D +S GHGRFQT+ EK +FYG+ Sbjct: 340 TLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 385
>RL3A_ARATH (P17094) 60S ribosomal protein L3| Length = 388 Score = 182 bits (463), Expect = 4e-46 Identities = 84/107 (78%), Positives = 96/107 (89%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +NKK+Y++GKVG E H A TE+DRTEKD+TPMGGFPHYG+VK DYLMIKGCCVGPKKRVV Sbjct: 280 LNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVV 339 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKL 215 LRQSLL QTSRLALEEIKLKF+DT+S FGHGRFQT+ EK RFY ++ Sbjct: 340 TLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 386
>RL3_DROME (O16797) 60S ribosomal protein L3| Length = 415 Score = 144 bits (364), Expect = 1e-34 Identities = 72/115 (62%), Positives = 86/115 (74%), Gaps = 7/115 (6%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCV 377 +NKK+Y+IG G T D ASTE+D T+K ITPMGGFPHYG V D++MIKGCC+ Sbjct: 279 INKKIYRIG-AGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCI 337 Query: 376 GPKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 G KKR++ LR+SLLK T R ALE+IKLKF+DTSSK GHGRFQT +K F G LK Sbjct: 338 GSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 392
>RL3_TOXCA (P49149) 60S ribosomal protein L3| Length = 401 Score = 137 bits (346), Expect = 1e-32 Identities = 64/111 (57%), Positives = 84/111 (75%), Gaps = 3/111 (2%) Frame = -3 Query: 535 MNKKVYKIGK---VGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKK 365 +NKK+Y++GK + + T++D TEK + PMGGFPHYG+V D++MI+GCCVG KK Sbjct: 279 VNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKK 338 Query: 364 RVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 R + LR+SL+ QT R A E+I LK++DTSSKFGHGRFQT EK+ F GKLK Sbjct: 339 RPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 389
>RL3_CAEEL (P50880) 60S ribosomal protein L3| Length = 401 Score = 137 bits (345), Expect = 2e-32 Identities = 65/111 (58%), Positives = 86/111 (77%), Gaps = 3/111 (2%) Frame = -3 Query: 535 MNKKVYKIGKVG---QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKK 365 +N K+Y+IGK + ++ STEFD T+K ITPMGGFP YG+V DY+M++G +GPKK Sbjct: 280 INNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKK 339 Query: 364 RVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 R++ LR+SL+ QT R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK Sbjct: 340 RLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3| Length = 401 Score = 134 bits (337), Expect = 2e-31 Identities = 64/111 (57%), Positives = 85/111 (76%), Gaps = 3/111 (2%) Frame = -3 Query: 535 MNKKVYKIGKVG---QETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKK 365 +N K+Y+IGK + ++ STEFD T+K I PMGGFP YG+V DY+M++G +GPKK Sbjct: 280 INNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKK 339 Query: 364 RVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 R++ LR+SL+ QT R+A E+I LK++DTSSK GHGRFQTT EK+ F GKLK Sbjct: 340 RLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLK 390
>RL3_ASHGO (Q759R7) 60S ribosomal protein L3| Length = 388 Score = 132 bits (331), Expect = 8e-31 Identities = 67/108 (62%), Positives = 81/108 (75%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +N KVY+IGK G E + A+TEFDRT+K ITPMGGF HYG V D++M+KG G +KRVV Sbjct: 279 INHKVYRIGKGGDEGN-AATEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVV 337 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F G LK Sbjct: 338 TLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385
>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)| Length = 402 Score = 132 bits (331), Expect = 8e-31 Identities = 67/114 (58%), Positives = 87/114 (76%), Gaps = 6/114 (5%) Frame = -3 Query: 535 MNKKVYKIG-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVG 374 +NKK+YKIG K G+ ++AST++D ++K I P+GGF HYG V D++M+KGC VG Sbjct: 279 INKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVG 338 Query: 373 PKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 KKRV+ LR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 339 TKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)| Length = 402 Score = 132 bits (331), Expect = 8e-31 Identities = 67/114 (58%), Positives = 87/114 (76%), Gaps = 6/114 (5%) Frame = -3 Query: 535 MNKKVYKIG-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVG 374 +NKK+YKIG K G+ ++AST++D ++K I P+GGF HYG V D++M+KGC VG Sbjct: 279 INKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVG 338 Query: 373 PKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 KKRV+ LR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 339 TKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_BOVIN (P39872) 60S ribosomal protein L3| Length = 402 Score = 132 bits (331), Expect = 8e-31 Identities = 67/114 (58%), Positives = 87/114 (76%), Gaps = 6/114 (5%) Frame = -3 Query: 535 MNKKVYKIG-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVG 374 +NKK+YKIG K G+ ++AST++D ++K I P+GGF HYG V D++M+KGC VG Sbjct: 279 INKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVG 338 Query: 373 PKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 KKRV+ LR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 339 TKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 392
>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3| Length = 402 Score = 131 bits (330), Expect = 1e-30 Identities = 67/114 (58%), Positives = 87/114 (76%), Gaps = 6/114 (5%) Frame = -3 Query: 535 MNKKVYKIG-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVG 374 +NKK+YKIG K G+ ++AST++D ++K I P+GGF HYG V D++M+KGC VG Sbjct: 279 INKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVG 338 Query: 373 PKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 KKRV+ LR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 339 TKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)| (TARBP-B) Length = 402 Score = 131 bits (330), Expect = 1e-30 Identities = 67/114 (58%), Positives = 87/114 (76%), Gaps = 6/114 (5%) Frame = -3 Query: 535 MNKKVYKIG-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVG 374 +NKK+YKIG K G+ ++AST++D ++K I P+GGF HYG V D++M+KGC VG Sbjct: 279 INKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVG 338 Query: 373 PKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 KKRV+ LR+SLL QT R ALE+I LKF+DT+SKFGHGRFQT +EK+ F G LK Sbjct: 339 TKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 392
>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of| killer protein 8) (Trichodermin resistance protein) Length = 386 Score = 131 bits (330), Expect = 1e-30 Identities = 62/108 (57%), Positives = 81/108 (75%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +N K+Y++GK G + + +T FDRT+K ITPMGGF HYG +K D++M+KGC G +KR+V Sbjct: 277 INHKIYRVGK-GDDEANGATSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIV 335 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F G LK Sbjct: 336 TLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 383
>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like| Length = 406 Score = 131 bits (330), Expect = 1e-30 Identities = 66/115 (57%), Positives = 82/115 (71%), Gaps = 7/115 (6%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCV 377 +NKK+Y+IG+ G D AST +D T+K ITP+GGFPHYG V D++M+KGC Sbjct: 279 LNKKIYRIGR-GLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIA 337 Query: 376 GPKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 G KKRV+ LR+SLL SR ALE I+LKF+DT+SKFGHGRFQT EK+ F G K Sbjct: 338 GTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392
>RL3_DICDI (P34113) 60S ribosomal protein L3| Length = 397 Score = 131 bits (329), Expect = 1e-30 Identities = 61/111 (54%), Positives = 81/111 (72%), Gaps = 4/111 (3%) Frame = -3 Query: 532 NKKVYKIGKV----GQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKK 365 NKK+Y+IG+ G++ TEFD TEK I PMGGF HYG+VK ++LM+KGC GP+K Sbjct: 281 NKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRK 340 Query: 364 RVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 R + LR+S+ QT R ALE+I LKF+DTSSKFGHG QT ++K +++G K Sbjct: 341 RALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKK 391
>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B| Length = 387 Score = 129 bits (323), Expect = 7e-30 Identities = 63/108 (58%), Positives = 81/108 (75%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +N K+Y+IG G + +AST+FD TEK ITPMGGF YGVV+ D++M+ G GP KRV+ Sbjct: 277 LNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVL 335 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR+SLL TSR ALE + LK++DT+SKFGHGRFQT E ++F G LK Sbjct: 336 TLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383
>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A| Length = 387 Score = 129 bits (323), Expect = 7e-30 Identities = 63/108 (58%), Positives = 81/108 (75%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +N K+Y+IG G + +AST+FD TEK ITPMGGF YGVV+ D++M+ G GP KRV+ Sbjct: 277 LNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVL 335 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR+SLL TSR ALE + LK++DT+SKFGHGRFQT E ++F G LK Sbjct: 336 TLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 383
>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3| Length = 387 Score = 128 bits (322), Expect = 9e-30 Identities = 63/108 (58%), Positives = 81/108 (75%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +N KVY++GK G + +A+TEFDRT+K ITPMGGF HYG + D++++KG G +KRVV Sbjct: 278 INHKVYRVGK-GDDEANAATEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVV 336 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR+SL TSR ALEE+ LK++DT+SKFG GRFQT EK F G LK Sbjct: 337 TLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384
>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like| Length = 406 Score = 128 bits (321), Expect = 1e-29 Identities = 64/115 (55%), Positives = 81/115 (70%), Gaps = 7/115 (6%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHD-------ASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCV 377 +NKK+++IG+ G D AST +D T K ITP+GGFPHYG V D++M+KGC Sbjct: 279 LNKKIFRIGR-GPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIA 337 Query: 376 GPKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 G KKRV+ LR+SLL SR A+E I+LKF+DT+SKFGHGRFQT EK+ F G K Sbjct: 338 GTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 392
>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)| Length = 392 Score = 127 bits (318), Expect = 3e-29 Identities = 63/107 (58%), Positives = 82/107 (76%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 N KV++IGK G + +AST+FD ++K ITPMGGF YG VK DY+M+KG G KKRV+ Sbjct: 280 NHKVFRIGK-GSDEGNASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMT 338 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR++L QTSR A E+++LK++DTSSKFGHG FQT +EK+ F G LK Sbjct: 339 LRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385
>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3| Length = 387 Score = 126 bits (317), Expect = 3e-29 Identities = 63/108 (58%), Positives = 80/108 (74%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +N K+Y+IGK G + +A+T FDRT+K I PMGGF HYG+V D++M+KG G KKRVV Sbjct: 278 INHKIYRIGK-GDDEGNAATNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVV 336 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR+SL TSR A+EE+ LK++DT+SKFG GRFQT EK F G LK Sbjct: 337 TLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384
>RL3_ENCCU (Q8SQI3) 60S ribosomal protein L3| Length = 383 Score = 123 bits (309), Expect = 3e-28 Identities = 64/107 (59%), Positives = 79/107 (73%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK+VY IG + + TEFD TEK I+PMGGFPHYG V+ D++M+KG VG +KRVV Sbjct: 275 NKRVYMIGN---GSSNIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVT 331 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR+SLL+Q A EE+ +KFVDTSSK GHGRFQT+ EK+ FYG K Sbjct: 332 LRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARK 375
>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3| Length = 389 Score = 120 bits (301), Expect = 2e-27 Identities = 60/108 (55%), Positives = 76/108 (70%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +N KVY++G G E+ A TEFDRT+K I PMGGF YG VK D++++KG G KKR+V Sbjct: 278 INHKVYRVGSAGDESSGA-TEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIV 336 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 +R+SL TSR A E + LK++DT+SKFG GRFQT EK F G LK Sbjct: 337 TIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384
>RL3_NEUCR (P59671) 60S ribosomal protein L3| Length = 392 Score = 119 bits (299), Expect = 4e-27 Identities = 59/108 (54%), Positives = 79/108 (73%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +N K+Y+IGK G A+TE D T+K ITPMGGF YG + D++M+KG G KKRV+ Sbjct: 279 VNHKIYRIGK-GDAEDSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVM 337 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSKFGHGRFQTTDEKQRFYGKLK 212 LR+S+ TSR ALE+++LK++DTSS+FGHG FQT EK++F G LK Sbjct: 338 TLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385
>RL3_METJA (P54014) 50S ribosomal protein L3P| Length = 335 Score = 62.4 bits (150), Expect = 8e-10 Identities = 33/89 (37%), Positives = 52/89 (58%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ KIG G E ITP GGF HYGV++ +Y+++KG GP KR+++ Sbjct: 262 NKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIV 307 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 LR+++ Q + + EI ++ T+SK G Sbjct: 308 LRRAIRPQEPLIKVPEI--TYISTTSKQG 334
>RL3_PYRFU (Q8TZZ8) 50S ribosomal protein L3P| Length = 365 Score = 62.4 bits (150), Expect = 8e-10 Identities = 30/88 (34%), Positives = 53/88 (60%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +NK++ IG+ G+ D +TE + ITP GGFPHYG+V++D++MI G G KR++ Sbjct: 282 LNKRLIAIGENGKLKLDENTEIE-----ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRII 336 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSK 272 +R ++ + ++ ++ +V SK Sbjct: 337 RVRPAIRPPKKKPPVQRPQITYVSVESK 364
>RL3_PYRKO (Q5JDJ0) 50S ribosomal protein L3P| Length = 346 Score = 61.2 bits (147), Expect = 2e-09 Identities = 31/87 (35%), Positives = 52/87 (59%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ IG+ G+ D + E +ITP GGFPHYG+V++D+LMI+G G KR++ Sbjct: 265 NKRLIAIGENGKLVLDGN------EIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIR 318 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSK 272 +R ++ + +E ++ +V SK Sbjct: 319 VRPAIRPPKKKPPVERPQITYVSRESK 345
>RL3_PYRAB (Q9V1T5) 50S ribosomal protein L3P| Length = 361 Score = 59.7 bits (143), Expect = 5e-09 Identities = 29/88 (32%), Positives = 52/88 (59%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +NK++ IG+ G+ D + E +ITP GGFPHYG+V++D++MI G G KR++ Sbjct: 279 LNKRLIAIGENGKLVIDGN------EIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRII 332 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSK 272 +R ++ + ++ ++ +V SK Sbjct: 333 RVRPAIRPPKKKPPVQRPQITYVSVESK 360
>RL3_PYRHO (O59418) 50S ribosomal protein L3P| Length = 362 Score = 59.3 bits (142), Expect = 7e-09 Identities = 29/88 (32%), Positives = 51/88 (57%) Frame = -3 Query: 535 MNKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVV 356 +NK++ IG+ G+ D + E +ITP GGFPHYG+V+ D++MI G G KR++ Sbjct: 280 LNKRLIAIGENGKLVIDGN------EIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRII 333 Query: 355 ILRQSLLKQTSRLALEEIKLKFVDTSSK 272 +R ++ + ++ ++ +V SK Sbjct: 334 RVRPAIRPPKKKPPVQRPQITYVSVESK 361
>RL3_METAC (Q8TRU7) 50S ribosomal protein L3P| Length = 337 Score = 56.2 bits (134), Expect = 6e-08 Identities = 31/89 (34%), Positives = 48/89 (53%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ KIG G+E +TP GGF +YG+V+ DY++IKG GP KR++ Sbjct: 265 NKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIR 310 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 LR + + + L E + ++ SK G Sbjct: 311 LRDPI--RAKKADLGEPNILYISRESKQG 337
>RL3_ARCFU (O28354) 50S ribosomal protein L3P| Length = 331 Score = 55.8 bits (133), Expect = 7e-08 Identities = 29/89 (32%), Positives = 50/89 (56%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ KIG+ G+E ITP GGF HYGV++ Y+++ G GP KR++ Sbjct: 258 NKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIR 303 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 +R ++ + + + + + +V T+SK G Sbjct: 304 MRDAI--RPPKAHFDGVNIVYVSTTSKQG 330
>RL3_METTH (O26110) 50S ribosomal protein L3P| Length = 337 Score = 55.8 bits (133), Expect = 7e-08 Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 9/98 (9%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEF--------DRTEKD-ITPMGGFPHYGVVKADYLMIKGCC 380 ++ ++ + + GQ + TE+ D +E D + P GGF YG+V+ DY+MIKG Sbjct: 241 SRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEADLVNPDGGFVRYGLVRNDYVMIKGSV 300 Query: 379 VGPKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 GP KR+V+LR+++ + + E ++ ++ T+SK G Sbjct: 301 PGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336
>RL3_METMA (Q8PV50) 50S ribosomal protein L3P| Length = 337 Score = 55.8 bits (133), Expect = 7e-08 Identities = 31/89 (34%), Positives = 48/89 (53%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ KIG G+E +TP GGF +YG+V+ DY++IKG GP KR++ Sbjct: 265 NKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIR 310 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 LR + + + L E + ++ SK G Sbjct: 311 LRDPI--RAKKADLGEPNILYISRESKQG 337
>RL3_METKA (Q8TY90) 50S ribosomal protein L3P| Length = 361 Score = 55.1 bits (131), Expect = 1e-07 Identities = 27/65 (41%), Positives = 40/65 (61%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ KIG+ G+E +TP GGF +YGVV+ DY+MI G GPKKR++ Sbjct: 268 NKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIR 313 Query: 352 LRQSL 338 +R ++ Sbjct: 314 VRPAV 318
>RL3_METVA (Q9UWG2) 50S ribosomal protein L3P| Length = 334 Score = 55.1 bits (131), Expect = 1e-07 Identities = 31/90 (34%), Positives = 47/90 (52%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ K+G G E ITP GGF +YG VK Y+++KG GP KR+V+ Sbjct: 261 NKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVV 306 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSKFGH 263 LR ++ + L E+ ++ SK G+ Sbjct: 307 LRGAVRPAEDKFGLPEV--TYISKESKQGN 334
>RL3_PYRAE (Q8ZW52) 50S ribosomal protein L3P| Length = 338 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/62 (45%), Positives = 37/62 (59%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ KIG+ G E ITP GFPHYGVVK Y++I+G G +KR+V+ Sbjct: 266 NKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVV 311 Query: 352 LR 347 LR Sbjct: 312 LR 313
>RL3_HALSA (Q9HPD4) 50S ribosomal protein L3P| Length = 334 Score = 45.8 bits (107), Expect = 7e-05 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Frame = -3 Query: 502 GQETHDASTEFDRTEKDI------TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVILRQS 341 GQ + TE ++ DI TP GGFP+YG V Y ++KG GP++R+V R + Sbjct: 252 GQTGYHQRTELNKRLIDINDGDEPTPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPA 311 Query: 340 LLKQTSRLALEEIKLKFVDTSSKFG 266 + S E+ ++V T+S G Sbjct: 312 VRPNESPRLDPEV--RYVSTASNQG 334
>RL3_THEAC (Q9HIQ9) 50S ribosomal protein L3P| Length = 331 Score = 45.8 bits (107), Expect = 7e-05 Identities = 23/62 (37%), Positives = 36/62 (58%) Frame = -3 Query: 451 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSK 272 I GGF HYG VK DY+++ G G KR++ +R ++ +EE+KL+++ SK Sbjct: 271 INVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESK 328 Query: 271 FG 266 G Sbjct: 329 QG 330
>RL3_THEVO (Q97BX7) 50S ribosomal protein L3P| Length = 331 Score = 45.4 bits (106), Expect = 1e-04 Identities = 22/62 (35%), Positives = 36/62 (58%) Frame = -3 Query: 451 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVILRQSLLKQTSRLALEEIKLKFVDTSSK 272 I GGF HYG+VK DY+++ G GP KR++ +R ++ ++ +KL ++ SK Sbjct: 271 INVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESK 328 Query: 271 FG 266 G Sbjct: 329 QG 330
>RL3_SULTO (Q975I1) 50S ribosomal protein L3P| Length = 343 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 7/86 (8%) Frame = -3 Query: 502 GQETHDASTEFDRT-------EKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVILRQ 344 GQ + TE+++ +I P GGF +YG+V+ YL+I+G +G KKR + LR Sbjct: 260 GQMGYHRRTEYNKRILKISDDPNEINPKGGFVNYGIVRNTYLIIEGSIIGAKKRPLFLRY 319 Query: 343 SLLKQTSRLALEEIKLKFVDTSSKFG 266 + + S + K+ +V+ S+ G Sbjct: 320 PI--RPSWIPQSAPKITYVNLYSQQG 343
>RL3_SULSO (Q9UXA8) 50S ribosomal protein L3P| Length = 351 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ KIG K+I P GGF YG+V+ Y++++G +G KKR + Sbjct: 279 NKRIIKIGD--------------EPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIF 324 Query: 352 LRQ 344 LR+ Sbjct: 325 LRE 327
>RL3_PIG (Q29293) 60S ribosomal protein L3 (Fragment)| Length = 130 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/54 (40%), Positives = 35/54 (64%), Gaps = 6/54 (11%) Frame = -3 Query: 535 MNKKVYKIG-----KVGQET-HDASTEFDRTEKDITPMGGFPHYGVVKADYLMI 392 +NKK+YKIG K G+ ++ T++D ++K I P+G F HYG V D++M+ Sbjct: 77 INKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130
>RL3_AERPE (Q9YFM2) 50S ribosomal protein L3P| Length = 344 Score = 41.6 bits (96), Expect = 0.001 Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 2/64 (3%) Frame = -3 Query: 451 ITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVILRQSLL--KQTSRLALEEIKLKFVDTS 278 +TP GGF YGVV++ ++M+ G G KR +++R ++ + +L + + ++ ++ + Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339 Query: 277 SKFG 266 SK G Sbjct: 340 SKQG 343
>RUVB_LISMO (Q8Y6Z8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 40.8 bits (94), Expect = 0.002 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%) Frame = +2 Query: 155 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 310 + H+ F +++T+++LR+S+ L+ I+ L G E A P++ + K DF Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233 Query: 311 QCETRGLLQQGLAEDHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 484 Q G + + LA++ TLL D LD L HTI+ ++ G V L + S G Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>RUVB_LISMF (Q71ZD8) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 40.8 bits (94), Expect = 0.002 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 8/118 (6%) Frame = +2 Query: 155 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 310 + H+ F +++T+++LR+S+ L+ I+ L G E A P++ + K DF Sbjct: 177 IDHLEFYTEEQLTEIVLRTSNILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233 Query: 311 QCETRGLLQQGLAEDHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 484 Q G + + LA++ TLL D LD L HTI+ ++ G V L + S G Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>RL3_SULAC (Q4JB40) 50S ribosomal protein L3P| Length = 342 Score = 40.8 bits (94), Expect = 0.002 Identities = 27/89 (30%), Positives = 44/89 (49%) Frame = -3 Query: 532 NKKVYKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVI 353 NK++ KIG +I P GG +YG+VK YL+I+G +G +KR + Sbjct: 270 NKRIIKIGD--------------NVNEINPAGGIVNYGLVKNTYLVIEGSVLGSRKRPLF 315 Query: 352 LRQSLLKQTSRLALEEIKLKFVDTSSKFG 266 LR + S + K+ +V+ +S+ G Sbjct: 316 LRYPIRPSWSPESAP--KITYVNLASQQG 342
>RUVB_LISIN (Q92BI2) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 335 Score = 40.4 bits (93), Expect = 0.003 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 8/118 (6%) Frame = +2 Query: 155 VSHVRF---DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFL 310 + H+ F +++T+++LR+S L+ I+ L G E A P++ + K DF Sbjct: 177 IDHLEFYTEEQLTEIVLRTSGILDTKIDDL---GAREIARRSRGTPRIANRLLKRVRDFA 233 Query: 311 QCETRGLLQQGLAEDHHTLLWPDTASLDHQVVGLHHTIVREATHGSDVLLGPVELSRG 484 Q G + + LA++ TLL D LD L HTI+ ++ G V L + S G Sbjct: 234 QVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTII-QSFRGGPVGLDTIAASIG 290
>RL3_HALMA (P20279) 50S ribosomal protein L3P (Hmal3) (Hl1)| Length = 337 Score = 37.0 bits (84), Expect = 0.035 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 6/61 (9%) Frame = -3 Query: 502 GQETHDASTEFDRTEKDI------TPMGGFPHYGVVKADYLMIKGCCVGPKKRVVILRQS 341 GQ + TE ++ DI T GGF +YG V Y ++KG GP KR+V R + Sbjct: 255 GQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPA 314 Query: 340 L 338 + Sbjct: 315 V 315
>RL3_NANEQ (P60458) 50S ribosomal protein L3P| Length = 321 Score = 36.6 bits (83), Expect = 0.045 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 4/72 (5%) Frame = -3 Query: 502 GQETHDASTEFDRT----EKDITPMGGFPHYGVVKADYLMIKGCCVGPKKRVVILRQSLL 335 GQ + TE+++ + + GG+ YG V +++KG GP+KR++ILR+++ Sbjct: 242 GQMGYHRRTEYNKLIIKIGEPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIR 301 Query: 334 KQTSRLALEEIK 299 + +E I+ Sbjct: 302 PPRKQEKVEGIE 313
>RUVB_GEOMG (Q39XN6) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 32.7 bits (73), Expect = 0.66 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%) Frame = +2 Query: 173 DKMTQLILRSSSSLELAIEPLLLVGGLETA-----VPKLGRGVDKLELDFLQCETRGLLQ 337 D++T ++ RS+ L + IEP GG E A P++ + + DF Q G++ Sbjct: 183 DELTTIVTRSARILNIGIEP---EGGRELARRSRGTPRIANRLLRRVRDFAQVRADGVIT 239 Query: 338 QGLAEDHHTLLWPDTASLDHQVVGLHHTIV 427 + ++ LL D DH + TI+ Sbjct: 240 APVVDESLKLLEIDEKGFDHMDRTIMLTII 269
>RL3_MYCPU (Q98PY0) 50S ribosomal protein L3| Length = 266 Score = 32.0 bits (71), Expect = 1.1 Identities = 15/43 (34%), Positives = 27/43 (62%) Frame = -3 Query: 415 VKADYLMIKGCCVGPKKRVVILRQSLLKQTSRLALEEIKLKFV 287 VK + L++KG GPKK V++++ K S+ A++ + L+ V Sbjct: 182 VKNNILLVKGAVPGPKKGFVVIKECAKKIPSKEAVKLVDLEIV 224
>HEM3_DESVH (Q72AV0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 315 Score = 30.8 bits (68), Expect = 2.5 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Frame = +2 Query: 194 LRSSSSLELAIEPLL----LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEDHH 361 LR S L LA+ P L L G ++T + KL G E D + T GL + GLA HH Sbjct: 129 LRRQSQL-LALRPDLDIISLRGNVDTRLRKLMDG----EFDAIVMATAGLKRLGLAAPHH 183 Query: 362 TLLWP 376 +L P Sbjct: 184 EVLAP 188
>IPAC_SHIFL (P18012) Invasin ipaC (42 kDa antigen)| Length = 363 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +2 Query: 200 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 349 SS+++ L I +L+ L TA KLG + + D + +++QGLA Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152
>IPAC_SHIDY (Q03946) Invasin ipaC (42 kDa antigen)| Length = 363 Score = 30.8 bits (68), Expect = 2.5 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +2 Query: 200 SSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 349 SS+++ L I +L+ L TA KLG + + D + +++QGLA Sbjct: 103 SSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLA 152
>ICAM5_HUMAN (Q9UMF0) Intercellular adhesion molecule 5 precursor (ICAM-5)| (Telencephalin) Length = 924 Score = 30.4 bits (67), Expect = 3.3 Identities = 16/66 (24%), Positives = 27/66 (40%) Frame = +2 Query: 254 ETAVPKLGRGVDKLELDFLQCETRGLLQQGLAEDHHTLLWPDTASLDHQVVGLHHTIVRE 433 E+ P ++ E L C RG G+ + WP+ + + G +H + Sbjct: 670 ESTCPSHQTWLEGAEASALACAARGRPSPGVRCSREGIPWPEQQRVSREDAGTYHCVATN 729 Query: 434 ATHGSD 451 A HG+D Sbjct: 730 A-HGTD 734
>RUVB_ENTFA (Q839T5) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 338 Score = 30.0 bits (66), Expect = 4.3 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Frame = +2 Query: 155 VSHVRF---DKMTQLILRSSSSLELAI--EPLLLVGGLETAVPKLGRGVDKLELDFLQCE 319 +SH+ + + +++LRS+ + I E + P++ + K DF Q + Sbjct: 178 ISHMEYYQEQDLKEIVLRSADIFQTEIFEEGAFEIARRSRGTPRIANRLLKRVRDFAQVQ 237 Query: 320 TRGLLQQGLAEDHHTLLWPDTASLDH 397 + G + + +A+ TLL D LD+ Sbjct: 238 SDGKIDRAIADKALTLLQVDHQGLDY 263
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 30.0 bits (66), Expect = 4.3 Identities = 18/55 (32%), Positives = 33/55 (60%) Frame = +2 Query: 167 RFDKMTQLILRSSSSLELAIEPLLLVGGLETAVPKLGRGVDKLELDFLQCETRGL 331 R+ +T+L + +LE A++ L G L++ +L +DK+E++ L ET+GL Sbjct: 5516 RYKDITKLSADVAKTLEHALQ---LAGQLQSMHKELCNWLDKVEVELLSYETQGL 5567
>RUVB_RHOBA (Q7UPG4) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 366 Score = 29.6 bits (65), Expect = 5.6 Identities = 18/87 (20%), Positives = 41/87 (47%), Gaps = 2/87 (2%) Frame = +2 Query: 176 KMTQLILRSSSSLELAIEPLL--LVGGLETAVPKLGRGVDKLELDFLQCETRGLLQQGLA 349 ++ +++LR+S L + ++P ++ + P+L D+ Q +T+G ++ + Sbjct: 216 ELAEIVLRNSKKLNIEVDPTSAGVIADRSRSTPRLANNRLLWVRDYAQSKTKGNVEASVC 275 Query: 350 EDHHTLLWPDTASLDHQVVGLHHTIVR 430 E ++ D LD Q T++R Sbjct: 276 EAALDMIGIDHLGLDKQDRNYLDTLMR 302
>LAMA1_MOUSE (P19137) Laminin alpha-1 chain precursor (Laminin A chain)| Length = 3084 Score = 29.3 bits (64), Expect = 7.3 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -3 Query: 496 ETHDASTEFDRTEKDITPMGGFPHYGVVK 410 ET A+++ +R EKD+ +GG PH V+ Sbjct: 2426 ETPGAASDLNRLEKDLIYVGGLPHSKAVR 2454
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 28.9 bits (63), Expect = 9.5 Identities = 18/83 (21%), Positives = 33/83 (39%) Frame = +3 Query: 288 TNLSLISSSARREVCFSRDWRRITTRFFGPTQHPLIIR*SAFTTP**GKPPMGVMSFSVL 467 T +++S+++R + DWR R F +QH V Sbjct: 1400 TQATIVSNASRSDP----DWRYTVVRIFAKSQH------------------------KVN 1431 Query: 468 SNSVEASWVSCPTLPILYTFLFI 536 S+ SW +C TL +++ F+ + Sbjct: 1432 DGSIFGSWKACQTLALMHDFVIL 1454 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,958,677 Number of Sequences: 219361 Number of extensions: 1690851 Number of successful extensions: 4518 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 4335 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4493 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
