ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FSTL_FLABI (P52838) Flavonol sulfotransferase-like (EC 2.8.2.-) 30 2.4
2SYK_PROMP (Q7UZP0) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--t... 28 5.3
3KCRB_RAT (P07335) Creatine kinase B-type (EC 2.7.3.2) (Creatine ... 28 6.9
4KCRB_MOUSE (Q04447) Creatine kinase B-type (EC 2.7.3.2) (Creatin... 28 6.9
5CP003_HUMAN (O95177) Protein C16orf3 28 9.0
6POLG_TBEVW (P14336) Genome polyprotein [Contains: Capsid protein... 28 9.0

>FSTL_FLABI (P52838) Flavonol sulfotransferase-like (EC 2.8.2.-)|
          Length = 309

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 11/21 (52%), Positives = 18/21 (85%)
 Frame = -1

Query: 160 EMADKLDRIVQDKLQGSGLLL 98
           EM +K+D+I+ +KL G+GL+L
Sbjct: 288 EMKEKIDKIMDEKLSGTGLIL 308



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>SYK_PROMP (Q7UZP0) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)|
           (LysRS)
          Length = 512

 Score = 28.5 bits (62), Expect = 5.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 22  IITIPKIKPQSTQSKVEKTTDN 87
           +IT P +KP+ T +K EK+T N
Sbjct: 488 VITFPLLKPEITSTKSEKSTSN 509



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>KCRB_RAT (P07335) Creatine kinase B-type (EC 2.7.3.2) (Creatine kinase, B|
           chain) (B-CK)
          Length = 381

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 32  FPKLN-HNQHRAKWKRPQITDDSQQQA*PLQLVLDDAVE 145
           FP L+ HN H AK   P++  + + +  P    LDDA++
Sbjct: 20  FPDLSSHNNHMAKVLTPELYAELRAKCTPSGFTLDDAIQ 58



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>KCRB_MOUSE (Q04447) Creatine kinase B-type (EC 2.7.3.2) (Creatine kinase, B|
           chain) (B-CK)
          Length = 381

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 32  FPKLN-HNQHRAKWKRPQITDDSQQQA*PLQLVLDDAVE 145
           FP L+ HN H AK   P++  + + +  P    LDDA++
Sbjct: 20  FPDLSSHNNHMAKVLTPELYAELRAKCTPSGFTLDDAIQ 58



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>CP003_HUMAN (O95177) Protein C16orf3|
          Length = 125

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 46  PQSTQSKVEKTTDNR*LTTAGLTPAACPGRCGRACP 153
           P  T  K  ++   R + +A   P ACP  C  ACP
Sbjct: 20  PAWTLKKPSESVAQRAMCSARACPVACPVGCPAACP 55



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>POLG_TBEVW (P14336) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3414

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -3

Query: 158  DGGQARPHRPGQAAGVRPAVVSHLLSVVFSTLLCVDCGLILGMVIMNQHMAS 3
            DG    P   G+A   +PA+    +S+V +T+LC      L  V+MN+ +AS
Sbjct: 2410 DGDVINPFGEGEA---KPALYERKMSLVLATVLC------LMSVVMNRTVAS 2452


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,737,302
Number of Sequences: 219361
Number of extensions: 381701
Number of successful extensions: 1160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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