ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4,... 86 1e-13
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
3ref|XM_471970.1| Oryza sativa (japonica cultivar-group), predic... 80 8e-12
4ref|XM_471950.1| Oryza sativa (japonica cultivar-group), predic... 64 5e-07
5dbj|AK103553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 5e-07
6emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
7gb|AY107154.1| Zea mays PCO148860 mRNA sequence 62 2e-06
8gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-6... 56 1e-04
9ref|XM_471943.1| Oryza sativa (japonica cultivar-group), predic... 54 5e-04
10emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4,... 54 5e-04
11dbj|AK099774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
12dbj|AK061686.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 5e-04
13gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 50 0.008
14gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 46 0.12
15gb|BT016054.1| Drosophila melanogaster LP17054 full insert cDNA 42 1.8
16emb|AL590683.16| Human DNA sequence from clone RP11-10N16 on chr... 42 1.8
17emb|AL079338.16|HSJ841K13 Human DNA sequence from clone RP5-841K... 42 1.8
18ref|NM_078691.2| Drosophila melanogaster Adaptin CG12532-RA (Bap... 42 1.8
19gb|AY052092.1| Drosophila melanogaster SD04106 full length cDNA 42 1.8
20gb|AC010671.8|AC010671 Drosophila melanogaster, chromosome X, re... 42 1.8
21gb|AC012165.6|AC012165 Drosophila melanogaster, chromosome X, re... 42 1.8
22gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.8
23gb|AE003513.3| Drosophila melanogaster chromosome X, section 65 ... 42 1.8
24gb|AC006198.1|AC006198 Homo sapiens, clone hRPK.3_A_1, complete ... 42 1.8
25emb|X75910.1|DMBA D.melanogaster mRNA for beta-adaptin 42 1.8
26gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 40 7.3
27gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, co... 40 7.3
28gb|AC126019.16| Medicago truncatula clone mth2-22p22, complete s... 40 7.3
29gb|AC119418.5| Medicago truncatula clone mth1-23l16, complete se... 40 7.3
30gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete se... 40 7.3
31gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete seq... 40 7.3
32gb|AC127893.5| Homo sapiens 12 BAC RP11-252G12 (Roswell Park Can... 40 7.3
33dbj|AB103466.1| Asparagus officinalis AOGLOB mRNA for MADS-box p... 40 7.3
34gb|AF124928.1|SCCLAVAM1 Streptomyces clavuligerus Cvm3 (cvm3) ge... 40 7.3
35emb|AL096870.5|CNS00YVI Human chromosome 14 DNA sequence BAC R-9... 40 7.3
36dbj|AB017351.1| Acidiphilium rubrum genes for 2-vinyl bacterioch... 40 7.3 
>emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067G20,
              complete sequence
          Length = 145825

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                          
Query: 407    acccaggctagcgcgagctgcgacgacgtgcagcccttcctcgccgccatctcgctcaca 466
              ||||| || ||||| |||||||||| ||||||||||||||||| ||||||| ||||||| 
Sbjct: 104340 acccacgccagcgccagctgcgacgccgtgcagcccttcctcgtcgccatcacgctcacc 104281

                                                                     
Query: 467    cgctcgaatatagcggcgttcttcttcaagttctcgggttgaaatcttgggagat 521
              |||||||| ||  | | |||||||| || |||||| || || |||||||| ||||
Sbjct: 104280 cgctcgaagatcaccgtgttcttctccatgttctccggctggaatcttggtagat 104226
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                            
Query: 407      acccaggctagcgcgagctgcgacgacgtgcagcccttcctcgccgccatctcgctcaca 466
                ||||| || ||||| |||||||||| ||||||||||||||||| ||||||| ||||||| 
Sbjct: 16143590 acccacgccagcgccagctgcgacgccgtgcagcccttcctcgtcgccatcacgctcacc 16143531

                                                                       
Query: 467      cgctcgaatatagcggcgttcttcttcaagttctcgggttgaaatcttgggagat 521
                |||||||| ||  | | |||||||| || |||||| || || |||||||| ||||
Sbjct: 16143530 cgctcgaagatcaccgtgttcttctccatgttctccggctggaatcttggtagat 16143476



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                            
Query: 374      ggtatggggcacacatcggttccccggtggtgaacccaggctagcgcgagctgcgacgac 433
                |||||||| || |||||| | ||  |||| ||||||||||| || |||||||||||||| 
Sbjct: 16018325 ggtatgggacagacatcgctcccttggtgatgaacccaggccagtgcgagctgcgacgat 16018266

                                       
Query: 434      gtgcagcccttcctcgccgccat 456
                ||||| ||||| ||||| |||||
Sbjct: 16018265 gtgcatccctttctcgctgccat 16018243



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                            
Query: 281      gcgtaggactcgagctcagccatctcctcaaccatgagctgcacagacatcgctctcacg 340
                ||||| |||||||| |||||||| ||||||    |||||| |||||| |  ||||  | |
Sbjct: 15932004 gcgtaagactcgagttcagccatttcctcaggtgtgagcttcacagatagtgctccaatg 15931945

                                                                            
Query: 341      ttctggttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttccccgg 400
                || ||||| |||||||| | ||| || || |||||||||||||| |||||| ||||| | 
Sbjct: 15931944 ttttggtttaaattctcgatttttgttgtcccaggtatggggcatacatcgcttccctga 15931885

                                               
Query: 401      tggtgaacccaggctagcgcgagctgcgacg 431
                || || |||||||| |  |||||||| ||||
Sbjct: 15931884 tgatggacccaggccaatgcgagctgtgacg 15931854
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>ref|XM_471970.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 360

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                       
Query: 407 acccaggctagcgcgagctgcgacgacgtgcagcccttcctcgccgccatctcgctcaca 466
           ||||| || ||||| |||||||||| ||||||||||||||||| ||||||| ||||||| 
Sbjct: 89  acccacgccagcgccagctgcgacgccgtgcagcccttcctcgtcgccatcacgctcacc 30

                   
Query: 467 cgctcgaa 474
           ||||||||
Sbjct: 29  cgctcgaa 22
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>ref|XM_471950.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1068

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 131/164 (79%)
 Strand = Plus / Minus

                                                                       
Query: 374 ggtatggggcacacatcggttccccggtggtgaacccaggctagcgcgagctgcgacgac 433
           |||||||| || |||||| | ||  |||| ||||||||||| || |||||||||||||| 
Sbjct: 872 ggtatgggacagacatcgctcccttggtgatgaacccaggccagtgcgagctgcgacgat 813

                                                                       
Query: 434 gtgcagcccttcctcgccgccatctcgctcacacgctcgaatatagcggcgttcttcttc 493
           ||||| ||||| ||||| |||||  |  | ||   ||||||||| || ||||||||||  
Sbjct: 812 gtgcatccctttctcgctgccatggcattaaccttctcgaatatcgccgcgttcttctcg 753

                                                       
Query: 494 aagttctcgggttgaaatcttgggagattcttgcggaaatcgtc 537
           | |||||| || || ||||| || ||  ||||||||||||||||
Sbjct: 752 aggttctctggctggaatctaggtaggctcttgcggaaatcgtc 709
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>dbj|AK103553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132F18, full
           insert sequence
          Length = 1236

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 131/164 (79%)
 Strand = Plus / Minus

                                                                       
Query: 374 ggtatggggcacacatcggttccccggtggtgaacccaggctagcgcgagctgcgacgac 433
           |||||||| || |||||| | ||  |||| ||||||||||| || |||||||||||||| 
Sbjct: 924 ggtatgggacagacatcgctcccttggtgatgaacccaggccagtgcgagctgcgacgat 865

                                                                       
Query: 434 gtgcagcccttcctcgccgccatctcgctcacacgctcgaatatagcggcgttcttcttc 493
           ||||| ||||| ||||| |||||  |  | ||   ||||||||| || ||||||||||  
Sbjct: 864 gtgcatccctttctcgctgccatggcattaaccttctcgaatatcgccgcgttcttctcg 805

                                                       
Query: 494 aagttctcgggttgaaatcttgggagattcttgcggaaatcgtc 537
           | |||||| || || ||||| || ||  ||||||||||||||||
Sbjct: 804 aggttctctggctggaatctaggtaggctcttgcggaaatcgtc 761
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>emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032I19,
              complete sequence
          Length = 145383

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                          
Query: 374    ggtatggggcacacatcggttccccggtggtgaacccaggctagcgcgagctgcgacgac 433
              |||||||| || |||||| | ||  |||| ||||||||||| || |||||||||||||| 
Sbjct: 102538 ggtatgggacagacatcgctcccttggtgatgaacccaggccagtgcgagctgcgacgat 102479

                                     
Query: 434    gtgcagcccttcctcgccgccat 456
              ||||| ||||| ||||| |||||
Sbjct: 102478 gtgcatccctttctcgctgccat 102456



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                         
Query: 281   gcgtaggactcgagctcagccatctcctcaaccatgagctgcacagacatcgctctcacg 340
             ||||| |||||||| |||||||| ||||||    |||||| |||||| |  ||||  | |
Sbjct: 16217 gcgtaagactcgagttcagccatttcctcaggtgtgagcttcacagatagtgctccaatg 16158

                                                                         
Query: 341   ttctggttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttccccgg 400
             || ||||| |||||||| | ||| || || |||||||||||||| |||||| ||||| | 
Sbjct: 16157 ttttggtttaaattctcgatttttgttgtcccaggtatggggcatacatcgcttccctga 16098

                                            
Query: 401   tggtgaacccaggctagcgcgagctgcgacg 431
             || || |||||||| |  |||||||| ||||
Sbjct: 16097 tgatggacccaggccaatgcgagctgtgacg 16067
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>gb|AY107154.1| Zea mays PCO148860 mRNA sequence
          Length = 1102

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                       
Query: 337 cacgttctggttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttcc 396
           |||||||||||| || ||||| | ||| || || |||||||||||||| |||||| ||||
Sbjct: 625 cacgttctggttgaagttctcgatttttgttgttccaggtatggggcaaacatcgtttcc 566

                          
Query: 397 ccggtggtgaaccca 411
           | | |||||||||||
Sbjct: 565 ctgatggtgaaccca 551



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 209 ggggtctcggagtccttccaggtgttg 235
           |||||||| ||||||||||||||||||
Sbjct: 750 ggggtctcagagtccttccaggtgttg 724
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>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete
             sequence
          Length = 116154

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                         
Query: 347   ttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttccccggtggtga 406
             ||||| ||||||| |||||| || |||||||| |||||||||||  ||||  |||| |||
Sbjct: 89036 ttcaagttctcaattttggtggttccaggtattgggcacacatcatttccttggtgatga 88977

                                 
Query: 407   acccaggctagcgcgagctg 426
             | ||||||||| || |||||
Sbjct: 88976 agccaggctagtgcaagctg 88957



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 347   ttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttccccggtggtga 406
             ||||| ||||||| |||||| || |||||||| |||||||||||  ||||  |||| |||
Sbjct: 51574 ttcaagttctcaattttggtggttccaggtattgggcacacatcatttccttggtgatga 51633

                                 
Query: 407   acccaggctagcgcgagctg 426
             | ||||||||| || |||||
Sbjct: 51634 agccaggctagtgcaagctg 51653
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>ref|XM_471943.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                       
Query: 281 gcgtaggactcgagctcagccatctcctcaaccatgagctgcacagacatcgctctcacg 340
           ||||| |||||||| |||||||| ||||||    |||||| |||||| |  ||||  | |
Sbjct: 953 gcgtaagactcgagttcagccatttcctcaggtgtgagcttcacagatagtgctccaatg 894

                                                                       
Query: 341 ttctggttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttccccgg 400
           || ||||| |||||||| | ||| || || |||||||||||||| |||||| ||||| | 
Sbjct: 893 ttttggtttaaattctcgatttttgttgtcccaggtatggggcatacatcgcttccctga 834

                                          
Query: 401 tggtgaacccaggctagcgcgagctgcgacg 431
           || || |||||||| |  |||||||| ||||
Sbjct: 833 tgatggacccaggccaatgcgagctgtgacg 803
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>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08,
              complete sequence
          Length = 130521

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                          
Query: 281    gcgtaggactcgagctcagccatctcctcaaccatgagctgcacagacatcgctctcacg 340
              ||||| |||||||| |||||||| ||||||    |||||| |||||| |  ||||  | |
Sbjct: 118569 gcgtaagactcgagttcagccatttcctcaggtgtgagcttcacagatagtgctccaatg 118510

                                                                          
Query: 341    ttctggttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttccccgg 400
              || ||||| |||||||| | ||| || || |||||||||||||| |||||| ||||| | 
Sbjct: 118509 ttttggtttaaattctcgatttttgttgtcccaggtatggggcatacatcgcttccctga 118450

                                             
Query: 401    tggtgaacccaggctagcgcgagctgcgacg 431
              || || |||||||| |  |||||||| ||||
Sbjct: 118449 tgatggacccaggccaatgcgagctgtgacg 118419
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>dbj|AK099774.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095E15, full
           insert sequence
          Length = 1374

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                       
Query: 281 gcgtaggactcgagctcagccatctcctcaaccatgagctgcacagacatcgctctcacg 340
           ||||| |||||||| |||||||| ||||||    |||||| |||||| |  ||||  | |
Sbjct: 989 gcgtaagactcgagttcagccatttcctcaggtgtgagcttcacagatagtgctccaatg 930

                                                                       
Query: 341 ttctggttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttccccgg 400
           || ||||| |||||||| | ||| || || |||||||||||||| |||||| ||||| | 
Sbjct: 929 ttttggtttaaattctcgatttttgttgtcccaggtatggggcatacatcgcttccctga 870

                                          
Query: 401 tggtgaacccaggctagcgcgagctgcgacg 431
           || || |||||||| |  |||||||| ||||
Sbjct: 869 tgatggacccaggccaatgcgagctgtgacg 839
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>dbj|AK061686.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-B01, full
           insert sequence
          Length = 1366

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 120/151 (79%)
 Strand = Plus / Minus

                                                                       
Query: 281 gcgtaggactcgagctcagccatctcctcaaccatgagctgcacagacatcgctctcacg 340
           ||||| |||||||| |||||||| ||||||    |||||| |||||| |  ||||  | |
Sbjct: 988 gcgtaagactcgagttcagccatttcctcaggtgtgagcttcacagatagtgctccaatg 929

                                                                       
Query: 341 ttctggttcaaattctcaactttggtcgtgccaggtatggggcacacatcggttccccgg 400
           || ||||| |||||||| | ||| || || |||||||||||||| |||||| ||||| | 
Sbjct: 928 ttttggtttaaattctcgatttttgttgtcccaggtatggggcatacatcgcttccctga 869

                                          
Query: 401 tggtgaacccaggctagcgcgagctgcgacg 431
           || || |||||||| |  |||||||| ||||
Sbjct: 868 tgatggacccaggccaatgcgagctgtgacg 838
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                    
Query: 409     ccaggctagcgcgagctgcgacgacgtgcagcccttc 445
               |||||| |||||||||||||| | |||||||||||||
Sbjct: 2286522 ccaggccagcgcgagctgcgaggccgtgcagcccttc 2286558
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 407     acccaggctagcgcgagctgcgacgacgtgcagcc 441
               |||||||| ||||||||||||| || |||||||||
Sbjct: 3703712 acccaggcaagcgcgagctgcgccggcgtgcagcc 3703746
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>gb|BT016054.1| Drosophila melanogaster LP17054 full insert cDNA
          Length = 3231

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 221  tccttccaggtgttgaggaac 241
            |||||||||||||||||||||
Sbjct: 2571 tccttccaggtgttgaggaac 2551
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>emb|AL590683.16| Human DNA sequence from clone RP11-10N16 on chromosome 1 Contains the
             5' end of the IL22RA1 gene for interleukin 22 receptor
             alpha 1, the IL28RA gene for interleukin 28 receptor alpha
             (interferon, lambda receptor), a novel gene and the 3' end
             of a novel gene, complete sequence
          Length = 164684

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 370   gccaggtatggggcacacatc 390
             |||||||||||||||||||||
Sbjct: 97434 gccaggtatggggcacacatc 97454
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>emb|AL079338.16|HSJ841K13 Human DNA sequence from clone RP5-841K13 on chromosome 20 Contains part
             of the gene for a novel protein (LOC284776), complete
             sequence
          Length = 122466

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 89    gcacagagtgctcatgaaattattt 113
             ||||| |||||||||||||||||||
Sbjct: 21866 gcacacagtgctcatgaaattattt 21890
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>ref|NM_078691.2| Drosophila melanogaster Adaptin CG12532-RA (Bap), mRNA
          Length = 3235

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 221  tccttccaggtgttgaggaac 241
            |||||||||||||||||||||
Sbjct: 2589 tccttccaggtgttgaggaac 2569
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>gb|AY052092.1| Drosophila melanogaster SD04106 full length cDNA
          Length = 2229

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 221  tccttccaggtgttgaggaac 241
            |||||||||||||||||||||
Sbjct: 1565 tccttccaggtgttgaggaac 1545
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>gb|AC010671.8|AC010671 Drosophila melanogaster, chromosome X, region 18E-18F, BAC clone
              BACR33M08, complete sequence
          Length = 180263

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 221    tccttccaggtgttgaggaac 241
              |||||||||||||||||||||
Sbjct: 130944 tccttccaggtgttgaggaac 130924
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>gb|AC012165.6|AC012165 Drosophila melanogaster, chromosome X, region 18F-18F, BAC clone
             BACR48P17, complete sequence
          Length = 176195

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 221   tccttccaggtgttgaggaac 241
             |||||||||||||||||||||
Sbjct: 14304 tccttccaggtgttgaggaac 14284
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 407     acccaggctagcgcgagctgcgacg 431
               |||||||| ||||||||||||||||
Sbjct: 3449909 acccaggccagcgcgagctgcgacg 3449933
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>gb|AE003513.3| Drosophila melanogaster chromosome X, section 65 of 74 of the complete
             sequence
          Length = 207432

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 221   tccttccaggtgttgaggaac 241
             |||||||||||||||||||||
Sbjct: 34443 tccttccaggtgttgaggaac 34423
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>gb|AC006198.1|AC006198 Homo sapiens, clone hRPK.3_A_1, complete sequence
          Length = 163410

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 89    gcacagagtgctcatgaaattattt 113
             ||||| |||||||||||||||||||
Sbjct: 98790 gcacacagtgctcatgaaattattt 98766
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>emb|X75910.1|DMBA D.melanogaster mRNA for beta-adaptin
          Length = 3217

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 221  tccttccaggtgttgaggaac 241
            |||||||||||||||||||||
Sbjct: 2567 tccttccaggtgttgaggaac 2547
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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness locus
              region
          Length = 160897

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    tttgacttgcaaatacttta 130
              ||||||||||||||||||||
Sbjct: 119114 tttgacttgcaaatacttta 119133
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>gb|AC111085.11| Mus musculus chromosome 9, clone RP23-146C24, complete sequence
          Length = 220622

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    tatccagttaagtggctttc 193
              ||||||||||||||||||||
Sbjct: 166109 tatccagttaagtggctttc 166090
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>gb|AC126019.16| Medicago truncatula clone mth2-22p22, complete sequence
          Length = 130044

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 480  cggcgttcttcttcaagttc 499
            ||||||||||||||||||||
Sbjct: 9571 cggcgttcttcttcaagttc 9590
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>gb|AC119418.5| Medicago truncatula clone mth1-23l16, complete sequence
          Length = 112695

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 480   cggcgttcttcttcaagttc 499
             ||||||||||||||||||||
Sbjct: 64867 cggcgttcttcttcaagttc 64886
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>gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete sequence
          Length = 110437

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aaattatttgacttgcaaat 124
             ||||||||||||||||||||
Sbjct: 54873 aaattatttgacttgcaaat 54892
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>gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete sequence
          Length = 129197

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   aaattatttgacttgcaaat 124
             ||||||||||||||||||||
Sbjct: 65133 aaattatttgacttgcaaat 65152
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>gb|AC127893.5| Homo sapiens 12 BAC RP11-252G12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 94971

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   catctcctcaaccatgagct 320
             ||||||||||||||||||||
Sbjct: 90429 catctcctcaaccatgagct 90448
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>dbj|AB103466.1| Asparagus officinalis AOGLOB mRNA for MADS-box protein, complete
           cds
          Length = 859

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  gtgctcatgaaattatttgacttg 119
           ||||||||||| ||||||||||||
Sbjct: 778 gtgctcatgaacttatttgacttg 801
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>gb|AF124928.1|SCCLAVAM1 Streptomyces clavuligerus Cvm3 (cvm3) gene, partial cds; Cvm2 (cvm2)
            and putative aldo/keto reductase family 2 enzyme (cvm1)
            genes, complete cds; and clavaminate synthase (cas1)
            gene, partial cds
          Length = 2929

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 395  ccccggtggtgaacccaggctagcgcgagctg 426
            ||||||||||| | |||||| |||||||||||
Sbjct: 1209 ccccggtggtgcagccaggcgagcgcgagctg 1240
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>emb|AL096870.5|CNS00YVI Human chromosome 14 DNA sequence BAC R-934B9 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196533

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   aattatttgacttgcaaata 125
             ||||||||||||||||||||
Sbjct: 18826 aattatttgacttgcaaata 18845
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>dbj|AB017351.1| Acidiphilium rubrum genes for 2-vinyl bacteriochlorophyll hydratase,
            light-independent protochlorophyllide reductase,
            magnesium chelatase, partial and complete cds
          Length = 7482

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 436  gcagcccttcctcgccgcca 455
            ||||||||||||||||||||
Sbjct: 1529 gcagcccttcctcgccgcca 1548


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,960,765
Number of Sequences: 3902068
Number of extensions: 3960765
Number of successful extensions: 72248
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72070
Number of HSP's gapped (non-prelim): 178
length of query: 537
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 514
effective length of database: 17,143,297,704
effective search space: 8811655019856
effective search space used: 8811655019856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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