ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart37b06 |
|---|---|
| Clone Library Name | barley_pub |
>Y736_HELPJ (Q9ZLA7) Putative aminotransferase jhp_0673 (EC 2.6.1.-)| Length = 369 Score = 33.1 bits (74), Expect = 0.35 Identities = 22/86 (25%), Positives = 42/86 (48%) Frame = -2 Query: 447 NINIPFAAPPLNTPSLQKYKRMIDAWGGWSLFQALLQTLKKVSLKHGVPISTVAVRYILN 268 N + AP L+T LQ+Y ++ GG F+AL Q K+V+L + + ++ Sbjct: 225 NNTTSYTAPILHTLGLQRYFELVQNLGG---FEALYQETKRVALASQKAVLALGLKIFPK 281 Query: 267 QTSVAGSMVGVRLGLSEHIRDTNAIL 190 S++ + + +SEH ++ +L Sbjct: 282 SPSLSMTTI-----VSEHAKELKNLL 302
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 33.1 bits (74), Expect = 0.35 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = -1 Query: 445 HQHTFRRTSSEHPIPAEVQEDDRCLGWLEPVPGSAPDLEEGVAE 314 H H + +HP P +Q+ G P PG AP+ GV E Sbjct: 92 HYHHLHQQQQQHPPPPHMQQQQHHGGPAPPPPGGAPEHAPGVKE 135
>ALN_BACSU (O32137) Allantoinase (EC 3.5.2.5)| Length = 446 Score = 32.3 bits (72), Expect = 0.59 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = -2 Query: 408 PSLQKYKRMIDAWGGWSLFQALLQTLKKVSLKHGVPISTVA 286 PSL++ M +WGG S Q L + +++L+H +P T+A Sbjct: 318 PSLKREDNMFLSWGGISGGQFTLLGMLELALEHQIPFETIA 358
>Y736_HELPY (O25436) Putative aminotransferase HP0736 (EC 2.6.1.-)| Length = 369 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/86 (23%), Positives = 41/86 (47%) Frame = -2 Query: 447 NINIPFAAPPLNTPSLQKYKRMIDAWGGWSLFQALLQTLKKVSLKHGVPISTVAVRYILN 268 N + AP L+T LQ+Y ++ GG F+AL + KK +L + + ++ Sbjct: 225 NNTTSYTAPILHTLGLQRYFELVQNLGG---FEALYRETKKAALATQKAVLALGLKIFPK 281 Query: 267 QTSVAGSMVGVRLGLSEHIRDTNAIL 190 S++ + + ++EH ++ +L Sbjct: 282 SPSLSMTTI-----VNEHAKELRNLL 302
>ZEP2_RAT (Q00900) Human immunodeficiency virus type I enhancer-binding protein| 2 homolog (DNA-binding protein AGIE-BP1) (Angiotensinogen gene-inducible enhancer-binding protein 1) (Myc intron-binding protein 1) Length = 2437 Score = 29.6 bits (65), Expect = 3.8 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 8/75 (10%) Frame = -1 Query: 460 VPRHQHQHTFRRTSSEH---PIPAEVQE---DDRCLGWLE--PVPGSAPDLEEGVAETRR 305 VP H HQ RR SSE P P EV E G L PV G++P E ++ Sbjct: 1015 VPGHHHQKEMRRCSSEQMPCPHPTEVPEIRSKSFDYGNLSHAPVAGASPSTLSPSRERKK 1074 Query: 304 PNLDRRRKIHTEPDI 260 L R+ P+I Sbjct: 1075 CFLVRQASFSGSPEI 1089
>ZEP2_HUMAN (P31629) Human immunodeficiency virus type I enhancer-binding protein| 2 (HIV-EP2) (MHC-binding protein 2) (MBP-2) Length = 2446 Score = 29.6 bits (65), Expect = 3.8 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 8/75 (10%) Frame = -1 Query: 460 VPRHQHQHTFRRTSSEH---PIPAEVQE---DDRCLGWLE--PVPGSAPDLEEGVAETRR 305 VP H HQ RR SSE P PAEV E G L PV G+A E ++ Sbjct: 1018 VPGHHHQKEMRRCSSEQMPCPHPAEVPEVRSKSFDYGNLSHAPVSGAAASTVSPSRERKK 1077 Query: 304 PNLDRRRKIHTEPDI 260 L R+ P+I Sbjct: 1078 CFLVRQASFSGSPEI 1092
>ZEP2_MOUSE (Q3UHF7) Human immunodeficiency virus type I enhancer-binding protein| 2 homolog (Myc intron-binding protein 1) (MIBP-1) Length = 2430 Score = 29.6 bits (65), Expect = 3.8 Identities = 26/75 (34%), Positives = 32/75 (42%), Gaps = 8/75 (10%) Frame = -1 Query: 460 VPRHQHQHTFRRTSSEH---PIPAEVQE---DDRCLGWLE--PVPGSAPDLEEGVAETRR 305 VP H HQ RR SSE P P EV E G L PV G++P E ++ Sbjct: 1010 VPGHHHQKEMRRCSSEQMPCPHPTEVPEIRSKSFDYGNLSHAPVAGTSPSTLSPSRERKK 1069 Query: 304 PNLDRRRKIHTEPDI 260 L R+ P+I Sbjct: 1070 CFLVRQASFSGSPEI 1084
>YM35_YEAST (Q03823) Hypothetical 95.1 kDa protein in IMP1-HLJ1 intergenic| region Length = 816 Score = 29.3 bits (64), Expect = 5.0 Identities = 13/63 (20%), Positives = 28/63 (44%) Frame = -2 Query: 444 INIPFAAPPLNTPSLQKYKRMIDAWGGWSLFQALLQTLKKVSLKHGVPISTVAVRYILNQ 265 + + F P N + YK ++ W+ + ++ V + H VP++ + +YI+ Sbjct: 291 LTLSFQCPLHNQDLIPTYKECVELLNHWAHLFKEVDSIFFVGVYHSVPLTLLLAKYIVQN 350 Query: 264 TSV 256 V Sbjct: 351 NEV 353
>Y825_HAEIN (P44056) Hypothetical protein HI0825| Length = 244 Score = 29.3 bits (64), Expect = 5.0 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Frame = +2 Query: 197 ALVSLMCSDSPSLTPTIDPATDVWFSMYLTATV--EIGT-PCFSDTFFKVWSRAWNRLQP 367 A +L+ SPS+ I VWF + L TV + T S T K+W R R Sbjct: 128 AFAALLTKKSPSIMSLIAMLVGVWFFVRLNLTVVHYLSTQEALSQTIRKIWMRGNTRKGV 187 Query: 368 PQASIILLYF 397 +L+YF Sbjct: 188 LFIYTLLVYF 197
>NKX28_HUMAN (O15522) Homeobox protein Nkx-2.8 (Homeobox protein NK-2 homolog H)| Length = 239 Score = 29.3 bits (64), Expect = 5.0 Identities = 19/58 (32%), Positives = 24/58 (41%) Frame = -1 Query: 460 VPRHQHQHTFRRTSSEHPIPAEVQEDDRCLGWLEPVPGSAPDLEEGVAETRRPNLDRR 287 +P QH RR P P Q D C WL+ G P +E ET P+ +R Sbjct: 17 LPEQDAQHLPRR----EPEPRAPQPDP-CAAWLDSERGHYPSSDESSLETSPPDSSQR 69
>ERMG_BACSH (P06571) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)| (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) Length = 244 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = -2 Query: 300 ISTVAVRYILNQTSVAGSMVGVRLGLSEHIRDTNAILSLLLDEE 169 IST +R I+ ++S S + V G ++ + DTN L+LLL E Sbjct: 106 ISTNIIRKIVFESSATISYLIVEYGFAKRLLDTNRSLALLLMAE 149
>ATAD3_MOUSE (Q925I1) ATPase family AAA domain-containing protein 3 (AAA-ATPase| TOB3) Length = 591 Score = 28.9 bits (63), Expect = 6.6 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -2 Query: 354 FQALLQTLKKVSLK-HGVPISTVAVRYILNQTSVAGSMVGVRLGLSEHIRDTNAI 193 F+A + KV+ G+ + V V N TSVAG + RLG +R+T+ I Sbjct: 236 FRAFVTDWDKVTATVAGLTLLAVGVYSAKNATSVAGRYIEARLGKPSLVRETSRI 290
>FSCN3_MOUSE (Q9QXW4) Fascin-3 (Testis fascin)| Length = 498 Score = 28.5 bits (62), Expect = 8.6 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 6/92 (6%) Frame = +2 Query: 188 DRIALVSLMCSDSPSLTPTIDPATDVWFSMYLT-----ATVEIGTPCFSDTFFKV-WSRA 349 +R+ +SL + S TPT+ + + YL A + G P SDTFF+V W+ Sbjct: 289 ERLTQMSLFQYECDSETPTLQLRSANGY--YLAQRRHRAIIADGHPMESDTFFRVHWNCG 346 Query: 350 WNRLQPPQASIILLYFCRDGVFRGGAAKGMLM 445 LQ P +G F G A+ G+LM Sbjct: 347 KITLQSP-----------NGRFLGIASDGLLM 367
>RC3H1_HUMAN (Q5TC82) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1133 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 362 QPPQASIILLYFCRDGVFRGGAAKG 436 QPPQ S Y CRD RGG +G Sbjct: 407 QPPQHSKYKTYMCRDMKQRGGCPRG 431
>RC3H1_MOUSE (Q4VGL6) Roquin (RING finger and C3H zinc finger protein 1)| (Sanroque protein) Length = 1130 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 362 QPPQASIILLYFCRDGVFRGGAAKG 436 QPPQ S Y CRD RGG +G Sbjct: 407 QPPQHSKYKTYMCRDMKQRGGCPRG 431
>DPOM_NEUIN (P33538) Probable DNA polymerase (EC 2.7.7.7)| Length = 969 Score = 28.5 bits (62), Expect = 8.6 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = -2 Query: 447 NINIPFAAPPLNTPSLQKYKRMIDAWGGWSLFQALLQTLK 328 N++ PF LNTP+ + + W GW + +L +K Sbjct: 687 NLDKPFLPTRLNTPAGTRTAFPLGQWEGWYFSEEILNAMK 726
>RC3H1_XENLA (Q6NUC6) Roquin (RING finger and C3H zinc finger protein 1)| Length = 1114 Score = 28.5 bits (62), Expect = 8.6 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +2 Query: 362 QPPQASIILLYFCRDGVFRGGAAKG 436 QPPQ S Y CRD RGG +G Sbjct: 409 QPPQHSKYKTYMCRDMKQRGGCPRG 433
>CATA_NEIGO (Q59602) Catalase (EC 1.11.1.6)| Length = 500 Score = 28.5 bits (62), Expect = 8.6 Identities = 22/98 (22%), Positives = 35/98 (35%) Frame = -2 Query: 405 SLQKYKRMIDAWGGWSLFQALLQTLKKVSLKHGVPISTVAVRYILNQTSVAGSMVGVRLG 226 S +Y + W W+L L + V G+P S + + T + G R Sbjct: 153 SAHQYSSATNNWDFWALLPEALHQVTIVMSDRGIPASYRHMHGFGSHTYSLWNEAGERFW 212 Query: 225 LSEHIRDTNAILSLLLDEEDMGSIAEASQRGRNLMEVI 112 + H R I +L +E + R+L E I Sbjct: 213 VKFHFRSQQGIKNLTNEEAAKIIADDRESHQRDLYEAI 250 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,593,880 Number of Sequences: 219361 Number of extensions: 1142993 Number of successful extensions: 4736 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4735 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
