Clone Information

BLAST Search Result

Clone Name	rbart37b06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK121487.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	139	9e-30
2	dbj\|AK068800.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	139	9e-30
3	dbj\|AK066166.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	139	9e-30
4	gb\|AY105400.1\| Zea mays PCO082439 mRNA sequence	133	6e-28
5	dbj\|AK060775.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	131	2e-27
6	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	74	4e-10
7	dbj\|AP005558.3\| Oryza sativa (japonica cultivar-group) genomic D...	74	4e-10
8	gb\|BT014157.1\| Lycopersicon esculentum clone 133277F, mRNA sequence	50	0.006
9	emb\|CR847537.9\| Zebrafish DNA sequence from clone DKEYP-79B2 in ...	48	0.025
10	gb\|CP000248.1\| Novosphingobium aromaticivorans DSM 12444, comple...	46	0.10
11	gb\|AC073610.17\| Homo sapiens 12 BAC RP11-302B13 (Roswell Park Ca...	46	0.10
12	dbj\|AB209018.1\| Homo sapiens mRNA for FK506 binding protein prec...	46	0.10
13	gb\|BC021345.1\| Mus musculus FK506 binding protein 11, mRNA (cDNA...	44	0.40
14	gb\|BC022900.1\| Mus musculus FK506 binding protein 11, mRNA (cDNA...	44	0.40
15	dbj\|BA000035.2\| Corynebacterium efficiens YS-314 DNA, complete g...	44	0.40
16	gb\|BC084709.1\| Rattus norvegicus FK506 binding protein 11, mRNA ...	44	0.40
17	ref\|NM_001013105.1\| Rattus norvegicus FK506 binding protein 11 (...	44	0.40
18	gb\|AC156543.10\| Mus musculus chromosome 15, clone RP23-220F2, co...	44	0.40
19	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	42	1.6
20	ref\|XM_515281.1\| PREDICTED: Pan troglodytes similar to Transcrip...	42	1.6
21	gb\|CP000143.1\| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl...	42	1.6
22	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	42	1.6
23	emb\|AL359373.21\| Human DNA sequence from clone RP11-5L19 on chro...	42	1.6
24	emb\|AL353596.13\| Human DNA sequence from clone CTA-212D2 on chro...	42	1.6
25	gb\|CP000088.1\| Thermobifida fusca YX, complete genome	42	1.6
26	emb\|BX571966.1\| Burkholderia pseudomallei strain K96243, chromos...	42	1.6
27	ref\|NM_003108.3\| Homo sapiens SRY (sex determining region Y)-box...	42	1.6
28	gb\|AC091729.4\| Homo sapiens BAC clone RP13-580H13 from 7, comple...	42	1.6
29	gb\|AC068207.6\| Homo sapiens chromosome 8, clone RP11-26K8, compl...	42	1.6
30	gb\|AC108025.4\| Homo sapiens BAC clone RP11-38F5 from 2, complete...	42	1.6
31	emb\|CT573074.1\| Kuenenia stuttgartiensis genome fragment KUST_B ...	42	1.6
32	dbj\|AP006305.1\| Homo sapiens genomic DNA, chromosome 8 clone:RP1...	42	1.6
33	gb\|U23752.1\|HSU23752 Human SOX-11 mRNA, complete cds	42	1.6
34	gb\|AC092818.4\| Homo sapiens chromosome 8, clone RP11-419C23, com...	42	1.6
35	dbj\|AP000072.1\| Homo sapiens genomic DNA, chromosome 8p11.2, sen...	42	1.6
36	dbj\|AB028641.1\| Homo sapiens mRNA for SOX11, complete cds	42	1.6
37	ref\|NM_194001.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.2
38	ref\|NM_021776.1\| Rattus norvegicus endothelin converting enzyme-...	40	6.2
39	gb\|AC132424.3\| Mus musculus BAC clone RP23-310P13 from chromosom...	40	6.2
40	gb\|AC125320.4\| Mus musculus BAC clone RP23-351P13 from chromosom...	40	6.2
41	gb\|AC113404.3\| Homo sapiens chromosome 5 clone RP11-466P24, comp...	40	6.2
42	dbj\|AB026293.1\| Rattus norvegicus DINE mRNA for metallopeptidase...	40	6.2
43	dbj\|AB023896.1\| Rattus norvegicus DINE mRNA for metallopeptidase...	40	6.2
44	gb\|AC020634.16\| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cance...	40	6.2
45	gb\|AC023745.3\| Drosophila melanogaster X BAC RP98-26N1 (Roswell ...	40	6.2
46	ref\|NM_132432.1\| Drosophila melanogaster CG2186-RA (CG2186), mRNA	40	6.2
47	gb\|AC103890.1\| 16q24.3 clone, complete sequence	40	6.2
48	gb\|AC010221.8\| Homo sapiens chromosome 5 clone CTC-262J4, comple...	40	6.2
49	gb\|AC026783.5\| Homo sapiens chromosome 5 clone CTD-2129A22, comp...	40	6.2
50	gb\|BT023500.1\| Drosophila melanogaster LD29862 full insert cDNA	40	6.2
51	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
52	gb\|AC113931.2\| Homo sapiens chromosome 16 clone CTD-2330P21, com...	40	6.2
53	gb\|AC087188.5\| Homo sapiens chromosome 16 clone RP11-345M22, com...	40	6.2
54	gb\|AC066692.3\| Homo sapiens BAC clone RP11-424C23 from 2, comple...	40	6.2
55	gb\|AC137932.1\| Homo sapiens chromosome 16 clone GS2-740I5, compl...	40	6.2
56	dbj\|AP003444.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
57	dbj\|AP003275.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
58	dbj\|AB162945.1\| Oryzias latipes NPR-C mRNA for natriuretic pepti...	40	6.2
59	gb\|AC125292.4\| Drosophila melanogaster X BAC CH223-5O10 (Childre...	40	6.2
60	gb\|AE003484.3\| Drosophila melanogaster chromosome X, section 36 ...	40	6.2
61	gb\|AC108398.9\| Mus musculus chromosome 13, clone RP24-350L19, co...	40	6.2
62	emb\|AL954343.10\| Zebrafish DNA sequence from clone CH211-226B4, ...	40	6.2
63	dbj\|AB024945.1\| Alcaligenes faecalis phenanthrene degradative ge...	40	6.2

>dbj|AK121487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150I20, full
           insert sequence
          Length = 909

 Score =  139 bits (70), Expect = 9e-30
 Identities = 199/242 (82%)
 Strand = Plus / Minus

                                                                       
Query: 197 gcgttggtgtccctgatgtgctccgacagccccagcctcacgcccaccatcgaccccgcc 256
           |||||||||||  | ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 547 gcgttggtgtcttttatgtgttcagagagtcccagtctcacacccaccattgaacccgca 488

                                                                       
Query: 257 accgatgtctggttcagtatgtatcttacggcgacggtcgagattgggacgccgtgtttc 316
           || ||||||||||||||||||||||| || || || || || || |  || || || |||
Sbjct: 487 acagatgtctggttcagtatgtatctcacagcaacagttgatatagaaacaccatgcttc 428

                                                                       
Query: 317 agcgacaccttcttcaaggtctggagcagagcctggaacaggctccagccaccccaagca 376
           |  || || |||||||| ||||| |||| ||||||||||||||||||||||||||| |||
Sbjct: 427 aatgatactttcttcaacgtctgaagcaaagcctggaacaggctccagccaccccaggca 368

                                                                       
Query: 377 tcgatcatcctcttgtacttctgcagggatggggtgttcagaggaggtgcggcgaaaggt 436
           || | ||||| ||| ||||||||||  |||||||| |||||||||||| | || ||||||
Sbjct: 367 tccaccatccgcttatacttctgcaaagatggggtattcagaggaggtccagcaaaaggt 308

             
Query: 437 at 438
           ||
Sbjct: 307 at 306

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>dbj|AK068800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158P04, full
            insert sequence
          Length = 1463

 Score =  139 bits (70), Expect = 9e-30
 Identities = 199/242 (82%)
 Strand = Plus / Minus

                                                                        
Query: 197  gcgttggtgtccctgatgtgctccgacagccccagcctcacgcccaccatcgaccccgcc 256
            |||||||||||  | ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 1101 gcgttggtgtcttttatgtgttcagagagtcccagtctcacacccaccattgaacccgca 1042

                                                                        
Query: 257  accgatgtctggttcagtatgtatcttacggcgacggtcgagattgggacgccgtgtttc 316
            || ||||||||||||||||||||||| || || || || || || |  || || || |||
Sbjct: 1041 acagatgtctggttcagtatgtatctcacagcaacagttgatatagaaacaccatgcttc 982

                                                                        
Query: 317  agcgacaccttcttcaaggtctggagcagagcctggaacaggctccagccaccccaagca 376
            |  || || |||||||| ||||| |||| ||||||||||||||||||||||||||| |||
Sbjct: 981  aatgatactttcttcaacgtctgaagcaaagcctggaacaggctccagccaccccaggca 922

                                                                        
Query: 377  tcgatcatcctcttgtacttctgcagggatggggtgttcagaggaggtgcggcgaaaggt 436
            || | ||||| ||| ||||||||||  |||||||| |||||||||||| | || ||||||
Sbjct: 921  tccaccatccgcttatacttctgcaaagatggggtattcagaggaggtccagcaaaaggt 862

              
Query: 437  at 438
            ||
Sbjct: 861  at 860

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>dbj|AK066166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055O13, full
            insert sequence
          Length = 1598

 Score =  139 bits (70), Expect = 9e-30
 Identities = 199/242 (82%)
 Strand = Plus / Minus

                                                                        
Query: 197  gcgttggtgtccctgatgtgctccgacagccccagcctcacgcccaccatcgaccccgcc 256
            |||||||||||  | ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 1215 gcgttggtgtcttttatgtgttcagagagtcccagtctcacacccaccattgaacccgca 1156

                                                                        
Query: 257  accgatgtctggttcagtatgtatcttacggcgacggtcgagattgggacgccgtgtttc 316
            || ||||||||||||||||||||||| || || || || || || |  || || || |||
Sbjct: 1155 acagatgtctggttcagtatgtatctcacagcaacagttgatatagaaacaccatgcttc 1096

                                                                        
Query: 317  agcgacaccttcttcaaggtctggagcagagcctggaacaggctccagccaccccaagca 376
            |  || || |||||||| ||||| |||| ||||||||||||||||||||||||||| |||
Sbjct: 1095 aatgatactttcttcaacgtctgaagcaaagcctggaacaggctccagccaccccaggca 1036

                                                                        
Query: 377  tcgatcatcctcttgtacttctgcagggatggggtgttcagaggaggtgcggcgaaaggt 436
            || | ||||| ||| ||||||||||  |||||||| |||||||||||| | || ||||||
Sbjct: 1035 tccaccatccgcttatacttctgcaaagatggggtattcagaggaggtccagcaaaaggt 976

              
Query: 437  at 438
            ||
Sbjct: 975  at 974

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>gb|AY105400.1| Zea mays PCO082439 mRNA sequence
          Length = 471

 Score =  133 bits (67), Expect = 6e-28
 Identities = 187/227 (82%)
 Strand = Plus / Minus

                                                                       
Query: 197 gcgttggtgtccctgatgtgctccgacagccccagcctcacgcccaccatcgaccccgcc 256
           |||||||||||  ||||||| || || || ||||  ||||| || ||||| || || || 
Sbjct: 296 gcgttggtgtctttgatgtgttcagagagtcccaatctcacaccgaccatggaacctgca 237

                                                                       
Query: 257 accgatgtctggttcagtatgtatcttacggcgacggtcgagattgggacgccgtgtttc 316
           || || |||||||||||||||||| | || || || || || || |  || |||||||||
Sbjct: 236 acagacgtctggttcagtatgtatttcacagcaaccgttgaaatagtaacaccgtgtttc 177

                                                                       
Query: 317 agcgacaccttcttcaaggtctggagcagagcctggaacaggctccagccaccccaagca 376
           || ||||||||||| ||||| || |||| || ||||||||||||||||||||||||||||
Sbjct: 176 agtgacaccttctttaaggtttgaagcaaagtctggaacaggctccagccaccccaagca 117

                                                          
Query: 377 tcgatcatcctcttgtacttctgcagggatggggtgttcagaggagg 423
           || | ||||||||| || ||||||| ||||||||| || ||||||||
Sbjct: 116 tcaaccatcctcttatatttctgcaaggatggggtatttagaggagg 70

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>dbj|AK060775.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B10, full
           insert sequence
          Length = 960

 Score =  131 bits (66), Expect = 2e-27
 Identities = 198/242 (81%)
 Strand = Plus / Minus

                                                                       
Query: 197 gcgttggtgtccctgatgtgctccgacagccccagcctcacgcccaccatcgaccccgcc 256
           |||||||||||  | ||||| || || || ||||| ||||| |||||||| || ||||| 
Sbjct: 598 gcgttggtgtcttttatgtgttcagagagtcccagtctcacacccaccattgaacccgca 539

                                                                       
Query: 257 accgatgtctggttcagtatgtatcttacggcgacggtcgagattgggacgccgtgtttc 316
           || ||||||||||||||||||||||| || ||  | || || || |  || || || |||
Sbjct: 538 acagatgtctggttcagtatgtatctcacagcagcagttgatatagaaacaccatgcttc 479

                                                                       
Query: 317 agcgacaccttcttcaaggtctggagcagagcctggaacaggctccagccaccccaagca 376
           |  || || |||||||| ||||| |||| ||||||||||||||||||||||||||| |||
Sbjct: 478 aatgatactttcttcaacgtctgaagcaaagcctggaacaggctccagccaccccaggca 419

                                                                       
Query: 377 tcgatcatcctcttgtacttctgcagggatggggtgttcagaggaggtgcggcgaaaggt 436
           || | ||||| ||| ||||||||||  |||||||| |||||||||||| | || ||||||
Sbjct: 418 tccaccatccgcttatacttctgcaaagatggggtattcagaggaggtccagcaaaaggt 359

             
Query: 437 at 438
           ||
Sbjct: 358 at 357

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 326      ttcttcaaggtctggagcagagcctggaacaggctccagccaccccaagcatc 378
                |||||||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct: 22350048 ttcttcaacgtctgaagcaaagcctggaacaggctccagccaccccaggcatc 22349996



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 392      tacttctgcagggatggggtgttcagaggaggtgcggcgaaaggtat 438
                ||||||||||  |||||||| |||||||||||| | || ||||||||
Sbjct: 22349901 tacttctgcaaagatggggtattcagaggaggtccagcaaaaggtat 22349855

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>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1155_H10
          Length = 140475

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                   
Query: 326    ttcttcaaggtctggagcagagcctggaacaggctccagccaccccaagcatc 378
              |||||||| ||||| |||| ||||||||||||||||||||||||||| |||||
Sbjct: 112056 ttcttcaacgtctgaagcaaagcctggaacaggctccagccaccccaggcatc 112004



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 392    tacttctgcagggatggggtgttcagaggaggtgcggcgaaaggtat 438
              ||||||||||  |||||||| |||||||||||| | || ||||||||
Sbjct: 111909 tacttctgcaaagatggggtattcagaggaggtccagcaaaaggtat 111863

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>gb|BT014157.1| Lycopersicon esculentum clone 133277F, mRNA sequence
          Length = 1374

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                       
Query: 356 aggctccagccaccccaagcatcgatcatcctcttgtacttctgcagggatggggtgttc 415
           |||||||| || ||||||||||| | |||||| ||||||||||| || || || ||||||
Sbjct: 937 aggctccaccctccccaagcatcaaccatccttttgtacttctgtagtgaaggagtgttc 878

            
Query: 416 a 416
           |
Sbjct: 877 a 877

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>emb|CR847537.9| Zebrafish DNA sequence from clone DKEYP-79B2 in linkage group 3, complete
              sequence
          Length = 144825

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 158    ctgcccatgtcctcctcgtccagc 181
              ||||||||||||||||||||||||
Sbjct: 108767 ctgcccatgtcctcctcgtccagc 108790

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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 177   ccagcagcagcgacaggatcgcg 199
             |||||||||||||||||||||||
Sbjct: 29573 ccagcagcagcgacaggatcgcg 29551

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>gb|AC073610.17| Homo sapiens 12 BAC RP11-302B13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 104593

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 325   cttcttcaaggtctggagcagag 347
             |||||||||||||||||||||||
Sbjct: 42338 cttcttcaaggtctggagcagag 42316

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>dbj|AB209018.1| Homo sapiens mRNA for FK506 binding protein precursor variant protein
          Length = 4977

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 325  cttcttcaaggtctggagcagag 347
            |||||||||||||||||||||||
Sbjct: 2211 cttcttcaaggtctggagcagag 2233

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>gb|BC021345.1| Mus musculus FK506 binding protein 11, mRNA (cDNA clone
            IMAGE:4187191), complete cds
          Length = 2414

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 325  cttcttcaaggtctggagcagagcct 350
            |||| |||||||||||||||||||||
Sbjct: 1199 cttcctcaaggtctggagcagagcct 1224

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>gb|BC022900.1| Mus musculus FK506 binding protein 11, mRNA (cDNA clone MGC:25423
           IMAGE:3590440), complete cds
          Length = 1429

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 325 cttcttcaaggtctggagcagagcct 350
           |||| |||||||||||||||||||||
Sbjct: 618 cttcctcaaggtctggagcagagcct 643

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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 145    cgcctcggcgatgctgcccatg 166
              ||||||||||||||||||||||
Sbjct: 519323 cgcctcggcgatgctgcccatg 519302

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>gb|BC084709.1| Rattus norvegicus FK506 binding protein 11, mRNA (cDNA clone
           MGC:105524 IMAGE:7301886), complete cds
          Length = 1325

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 325 cttcttcaaggtctggagcagagcct 350
           |||| |||||||||||||||||||||
Sbjct: 620 cttcctcaaggtctggagcagagcct 645

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>ref|NM_001013105.1| Rattus norvegicus FK506 binding protein 11 (Fkbp11), mRNA
          Length = 1325

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 325 cttcttcaaggtctggagcagagcct 350
           |||| |||||||||||||||||||||
Sbjct: 620 cttcctcaaggtctggagcagagcct 645

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>gb|AC156543.10| Mus musculus chromosome 15, clone RP23-220F2, complete sequence
          Length = 199715

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 325    cttcttcaaggtctggagcagagcct 350
              |||| |||||||||||||||||||||
Sbjct: 126213 cttcctcaaggtctggagcagagcct 126188

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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 145     cgcctcggcgatgctgcccat 165
               |||||||||||||||||||||
Sbjct: 3433926 cgcctcggcgatgctgcccat 3433906

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>ref|XM_515281.1| PREDICTED: Pan troglodytes similar to Transcription factor SOX-11
           (LOC459004), mRNA
          Length = 1188

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 cctcctcgtccagcagcagcg 188
           |||||||||||||||||||||
Sbjct: 800 cctcctcgtccagcagcagcg 820

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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 170     tcctcgtccagcagcagcgac 190
               |||||||||||||||||||||
Sbjct: 2169552 tcctcgtccagcagcagcgac 2169572

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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 167     tcctcctcgtccagcagcagc 187
               |||||||||||||||||||||
Sbjct: 2558792 tcctcctcgtccagcagcagc 2558812

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>emb|AL359373.21| Human DNA sequence from clone RP11-5L19 on chromosome 1 Contains the 5'
              end of the gene for a novel protein (FLJ31862, FLJ22091,
              FLJ10597) and two CpG islands, complete sequence
          Length = 117638

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 326    ttcttcaaggtctggagcagagcct 350
              ||||||||||||||||| |||||||
Sbjct: 115057 ttcttcaaggtctggagaagagcct 115033

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>emb|AL353596.13| Human DNA sequence from clone CTA-212D2 on chromosome 6 Contains the
            5' end of the HBS1L gene for HBS1-like (S. cerevisiae)
            (KIAA1038, EFRS) and a novel gene, complete sequence
          Length = 108329

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 9    aatctcatttcatttgttaag 29
            |||||||||||||||||||||
Sbjct: 4949 aatctcatttcatttgttaag 4929

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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 94      ctcgtcgccgcagtccccgat 114
               |||||||||||||||||||||
Sbjct: 3217637 ctcgtcgccgcagtccccgat 3217657

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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 176     tccagcagcagcgacaggatcgcgt 200
               |||||||||||||||||| ||||||
Sbjct: 1611675 tccagcagcagcgacaggttcgcgt 1611699

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>ref|NM_003108.3| Homo sapiens SRY (sex determining region Y)-box 11 (SOX11), mRNA
          Length = 8737

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 168  cctcctcgtccagcagcagcg 188
            |||||||||||||||||||||
Sbjct: 1077 cctcctcgtccagcagcagcg 1097

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>gb|AC091729.4| Homo sapiens BAC clone RP13-580H13 from 7, complete sequence
          Length = 104285

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 338   tggagcagagcctggaacagg 358
             |||||||||||||||||||||
Sbjct: 54018 tggagcagagcctggaacagg 53998

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>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence
          Length = 168843

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 336   tctggagcagagcctggaaca 356
             |||||||||||||||||||||
Sbjct: 16006 tctggagcagagcctggaaca 16026

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>gb|AC108025.4| Homo sapiens BAC clone RP11-38F5 from 2, complete sequence
          Length = 96880

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   cctcctcgtccagcagcagcg 188
             |||||||||||||||||||||
Sbjct: 81961 cctcctcgtccagcagcagcg 81981

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>emb|CT573074.1| Kuenenia stuttgartiensis genome fragment KUST_B (2 of 5)
          Length = 132284

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 39     atacatcgtcgtgggagcaca 59
              |||||||||||||||||||||
Sbjct: 122031 atacatcgtcgtgggagcaca 122051

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>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence
          Length = 185588

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 336    tctggagcagagcctggaaca 356
              |||||||||||||||||||||
Sbjct: 121362 tctggagcagagcctggaaca 121382

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>gb|U23752.1|HSU23752 Human SOX-11 mRNA, complete cds
          Length = 1998

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 168  cctcctcgtccagcagcagcg 188
            |||||||||||||||||||||
Sbjct: 1097 cctcctcgtccagcagcagcg 1117

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>gb|AC092818.4| Homo sapiens chromosome 8, clone RP11-419C23, complete sequence
          Length = 175100

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 336   tctggagcagagcctggaaca 356
             |||||||||||||||||||||
Sbjct: 10841 tctggagcagagcctggaaca 10821

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>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 8/19, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 336   tctggagcagagcctggaaca 356
             |||||||||||||||||||||
Sbjct: 14112 tctggagcagagcctggaaca 14092

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>dbj|AB028641.1| Homo sapiens mRNA for SOX11, complete cds
          Length = 8743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 168  cctcctcgtccagcagcagcg 188
            |||||||||||||||||||||
Sbjct: 1077 cctcctcgtccagcagcagcg 1097

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>ref|NM_194001.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 870

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 312 gtttcagcgacaccttcttcaaggtctg 339
           ||||||||| ||| ||||||||||||||
Sbjct: 299 gtttcagcgccactttcttcaaggtctg 326

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>ref|NM_021776.1| Rattus norvegicus endothelin converting enzyme-like 1 (Ecel1), mRNA
          Length = 7798

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 99  cgccgcagtccccgatgacctcca 122
           ||||||||||| ||||||||||||
Sbjct: 733 cgccgcagtcctcgatgacctcca 710

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>gb|AC132424.3| Mus musculus BAC clone RP23-310P13 from chromosome 15, complete sequence
          Length = 199655

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    tctggttcagtatgtatctt 283
              ||||||||||||||||||||
Sbjct: 186120 tctggttcagtatgtatctt 186139

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>gb|AC125320.4| Mus musculus BAC clone RP23-351P13 from chromosome 15, complete sequence
          Length = 229480

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    tctggttcagtatgtatctt 283
              ||||||||||||||||||||
Sbjct: 218055 tctggttcagtatgtatctt 218036

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>gb|AC113404.3| Homo sapiens chromosome 5 clone RP11-466P24, complete sequence
          Length = 197591

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   cttgtacttctgcagggatg 407
             ||||||||||||||||||||
Sbjct: 33776 cttgtacttctgcagggatg 33757

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>dbj|AB026293.1| Rattus norvegicus DINE mRNA for metallopeptidase, complete cds
          Length = 7798

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 99  cgccgcagtccccgatgacctcca 122
           ||||||||||| ||||||||||||
Sbjct: 733 cgccgcagtcctcgatgacctcca 710

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>dbj|AB023896.1| Rattus norvegicus DINE mRNA for metallopeptidase, complete cds
          Length = 2476

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 99  cgccgcagtccccgatgacctcca 122
           ||||||||||| ||||||||||||
Sbjct: 690 cgccgcagtcctcgatgacctcca 667

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>gb|AC020634.16| Homo sapiens 3 BAC RP11-9N20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 181174

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   aggtctggagcagagcctgg 352
             ||||||||||||||||||||
Sbjct: 85418 aggtctggagcagagcctgg 85437

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>gb|AC023745.3| Drosophila melanogaster X BAC RP98-26N1 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 179312

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tcctcctcgtccagcagcag 186
             ||||||||||||||||||||
Sbjct: 34814 tcctcctcgtccagcagcag 34795

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>ref|NM_132432.1| Drosophila melanogaster CG2186-RA (CG2186), mRNA
          Length = 4449

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  tcctcctcgtccagcagcag 186
            ||||||||||||||||||||
Sbjct: 3204 tcctcctcgtccagcagcag 3185

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>gb|AC103890.1| 16q24.3 clone, complete sequence
          Length = 129848

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   acagccccagcctcacgccc 241
             ||||||||||||||||||||
Sbjct: 70053 acagccccagcctcacgccc 70034

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>gb|AC010221.8| Homo sapiens chromosome 5 clone CTC-262J4, complete sequence
          Length = 101937

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 388   cttgtacttctgcagggatg 407
             ||||||||||||||||||||
Sbjct: 14447 cttgtacttctgcagggatg 14466

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>gb|AC026783.5| Homo sapiens chromosome 5 clone CTD-2129A22, complete sequence
          Length = 200232

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 388   cttgtacttctgcagggatg 407
             ||||||||||||||||||||
Sbjct: 62994 cttgtacttctgcagggatg 62975

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>gb|BT023500.1| Drosophila melanogaster LD29862 full insert cDNA
          Length = 4423

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 167  tcctcctcgtccagcagcag 186
            ||||||||||||||||||||
Sbjct: 3164 tcctcctcgtccagcagcag 3145

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 312      gtttcagcgacaccttcttcaaggtctg 339
                ||||||||| ||| ||||||||||||||
Sbjct: 14565830 gtttcagcgccactttcttcaaggtctg 14565857

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>gb|AC113931.2| Homo sapiens chromosome 16 clone CTD-2330P21, complete sequence
          Length = 100469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   gtctggagcagagcctggaa 354
             ||||||||||||||||||||
Sbjct: 66180 gtctggagcagagcctggaa 66161

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>gb|AC087188.5| Homo sapiens chromosome 16 clone RP11-345M22, complete sequence
          Length = 187870

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    gtctggagcagagcctggaa 354
              ||||||||||||||||||||
Sbjct: 152059 gtctggagcagagcctggaa 152078

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>gb|AC066692.3| Homo sapiens BAC clone RP11-424C23 from 2, complete sequence
          Length = 175028

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   tgtctggttcagtatgtatc 281
             ||||||||||||||||||||
Sbjct: 61434 tgtctggttcagtatgtatc 61415

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>gb|AC137932.1| Homo sapiens chromosome 16 clone GS2-740I5, complete sequence
          Length = 129785

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   acagccccagcctcacgccc 241
             ||||||||||||||||||||
Sbjct: 59852 acagccccagcctcacgccc 59871

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>dbj|AP003444.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1164G11
          Length = 142699

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 312   gtttcagcgacaccttcttcaaggtctg 339
             ||||||||| ||| ||||||||||||||
Sbjct: 47207 gtttcagcgccactttcttcaaggtctg 47234

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>dbj|AP003275.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0514H03
          Length = 167230

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 312    gtttcagcgacaccttcttcaaggtctg 339
              ||||||||| ||| ||||||||||||||
Sbjct: 125143 gtttcagcgccactttcttcaaggtctg 125170

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>dbj|AB162945.1| Oryzias latipes NPR-C mRNA for natriuretic peptide receptor type-C,
           complete cds
          Length = 2153

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 165 tgtcctcctcgtccagcagcagcg 188
           |||||||||||| |||||||||||
Sbjct: 610 tgtcctcctcgtacagcagcagcg 587

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>gb|AC125292.4| Drosophila melanogaster X BAC CH223-5O10 (Children's Hospital Oakland
             Research Institute Drosophila melanogaster sheared DNA BAC
             Library) complete sequence
          Length = 95026

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tcctcctcgtccagcagcag 186
             ||||||||||||||||||||
Sbjct: 90793 tcctcctcgtccagcagcag 90774

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>gb|AE003484.3| Drosophila melanogaster chromosome X, section 36 of 74 of the complete
             sequence
          Length = 314111

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   tcctcctcgtccagcagcag 186
             ||||||||||||||||||||
Sbjct: 89865 tcctcctcgtccagcagcag 89846

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>gb|AC108398.9| Mus musculus chromosome 13, clone RP24-350L19, complete sequence
          Length = 137487

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 335   gtctggagcagagcctggaa 354
             ||||||||||||||||||||
Sbjct: 77603 gtctggagcagagcctggaa 77584

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>emb|AL954343.10| Zebrafish DNA sequence from clone CH211-226B4, complete sequence
          Length = 198352

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      taatctcatttcatttgtta 27
              ||||||||||||||||||||
Sbjct: 152969 taatctcatttcatttgtta 152988

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>dbj|AB024945.1| Alcaligenes faecalis phenanthrene degradative gene cluster (phnAb to
            phnE genes), complete cds
          Length = 24448

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 237  cgcccaccatcgaccccgcc 256
            ||||||||||||||||||||
Sbjct: 1177 cgcccaccatcgaccccgcc 1158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,678,853
Number of Sequences: 3902068
Number of extensions: 3678853
Number of successful extensions: 76698
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76200
Number of HSP's gapped (non-prelim): 498
length of query: 460
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 438
effective length of database: 17,147,199,772
effective search space: 7510473500136
effective search space used: 7510473500136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result