ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart37b02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185558.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1597 Score = 283 bits (143), Expect = 2e-73 Identities = 197/215 (91%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1441 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 1382 Query: 282 gccttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagcca 341 |||||||||||||| || |||||||||||||| | ||| |||||||||||||| | ||| Sbjct: 1381 gccttcttgaagtcagcatgtgtcaccttcattcggcgttctctcaaagcaagaagtcca 1322 Query: 342 gattcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaac 401 | ||| || |||||||||||||| |||||||| |||||||||||||| |||||||| ||| Sbjct: 1321 gcttcagtacatattgctttgatatcagcaccggaaaactcatccttggtcatgacaaac 1262 Query: 402 tcttccaggttcacatcatctgacaatgtcatctt 436 |||||||||||||||||||||| |||||||||||| Sbjct: 1261 tcttccaggttcacatcatctgccaatgtcatctt 1227
>ref|XM_507415.1| PREDICTED Oryza sativa (japonica cultivar-group), P0034A04.112 mRNA Length = 1599 Score = 283 bits (143), Expect = 2e-73 Identities = 197/215 (91%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1440 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 1381 Query: 282 gccttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagcca 341 |||||||||||||| || |||||||||||||| | ||| |||||||||||||| | ||| Sbjct: 1380 gccttcttgaagtcagcatgtgtcaccttcattcggcgttctctcaaagcaagaagtcca 1321 Query: 342 gattcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaac 401 | ||| || |||||||||||||| |||||||| |||||||||||||| |||||||| ||| Sbjct: 1320 gcttcagtacatattgctttgatatcagcaccggaaaactcatccttggtcatgacaaac 1261 Query: 402 tcttccaggttcacatcatctgacaatgtcatctt 436 |||||||||||||||||||||| |||||||||||| Sbjct: 1260 tcttccaggttcacatcatctgccaatgtcatctt 1226
>ref|XM_506590.2| PREDICTED Oryza sativa (japonica cultivar-group), P0034A04.112 mRNA Length = 1615 Score = 283 bits (143), Expect = 2e-73 Identities = 197/215 (91%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1440 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 1381 Query: 282 gccttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagcca 341 |||||||||||||| || |||||||||||||| | ||| |||||||||||||| | ||| Sbjct: 1380 gccttcttgaagtcagcatgtgtcaccttcattcggcgttctctcaaagcaagaagtcca 1321 Query: 342 gattcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaac 401 | ||| || |||||||||||||| |||||||| |||||||||||||| |||||||| ||| Sbjct: 1320 gcttcagtacatattgctttgatatcagcaccggaaaactcatccttggtcatgacaaac 1261 Query: 402 tcttccaggttcacatcatctgacaatgtcatctt 436 |||||||||||||||||||||| |||||||||||| Sbjct: 1260 tcttccaggttcacatcatctgccaatgtcatctt 1226
>dbj|AK105861.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A02, full insert sequence Length = 1599 Score = 283 bits (143), Expect = 2e-73 Identities = 197/215 (91%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1440 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 1381 Query: 282 gccttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagcca 341 |||||||||||||| || |||||||||||||| | ||| |||||||||||||| | ||| Sbjct: 1380 gccttcttgaagtcagcatgtgtcaccttcattcggcgttctctcaaagcaagaagtcca 1321 Query: 342 gattcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaac 401 | ||| || |||||||||||||| |||||||| |||||||||||||| |||||||| ||| Sbjct: 1320 gcttcagtacatattgctttgatatcagcaccggaaaactcatccttggtcatgacaaac 1261 Query: 402 tcttccaggttcacatcatctgacaatgtcatctt 436 |||||||||||||||||||||| |||||||||||| Sbjct: 1260 tcttccaggttcacatcatctgccaatgtcatctt 1226
>dbj|AK099264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018C04, full insert sequence Length = 1597 Score = 283 bits (143), Expect = 2e-73 Identities = 197/215 (91%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1441 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 1382 Query: 282 gccttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagcca 341 |||||||||||||| || |||||||||||||| | ||| |||||||||||||| | ||| Sbjct: 1381 gccttcttgaagtcagcatgtgtcaccttcattcggcgttctctcaaagcaagaagtcca 1322 Query: 342 gattcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaac 401 | ||| || |||||||||||||| |||||||| |||||||||||||| |||||||| ||| Sbjct: 1321 gcttcagtacatattgctttgatatcagcaccggaaaactcatccttggtcatgacaaac 1262 Query: 402 tcttccaggttcacatcatctgacaatgtcatctt 436 |||||||||||||||||||||| |||||||||||| Sbjct: 1261 tcttccaggttcacatcatctgccaatgtcatctt 1227
>dbj|AK070759.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065N19, full insert sequence Length = 947 Score = 283 bits (143), Expect = 2e-73 Identities = 197/215 (91%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 741 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 682 Query: 282 gccttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagcca 341 |||||||||||||| || |||||||||||||| | ||| |||||||||||||| | ||| Sbjct: 681 gccttcttgaagtcagcatgtgtcaccttcattcggcgttctctcaaagcaagaagtcca 622 Query: 342 gattcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaac 401 | ||| || |||||||||||||| |||||||| |||||||||||||| |||||||| ||| Sbjct: 621 gcttcagtacatattgctttgatatcagcaccggaaaactcatccttggtcatgacaaac 562 Query: 402 tcttccaggttcacatcatctgacaatgtcatctt 436 |||||||||||||||||||||| |||||||||||| Sbjct: 561 tcttccaggttcacatcatctgccaatgtcatctt 527
>dbj|AK058311.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H11, full insert sequence Length = 1615 Score = 283 bits (143), Expect = 2e-73 Identities = 197/215 (91%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1440 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 1381 Query: 282 gccttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagcca 341 |||||||||||||| || |||||||||||||| | ||| |||||||||||||| | ||| Sbjct: 1380 gccttcttgaagtcagcatgtgtcaccttcattcggcgttctctcaaagcaagaagtcca 1321 Query: 342 gattcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaac 401 | ||| || |||||||||||||| |||||||| |||||||||||||| |||||||| ||| Sbjct: 1320 gcttcagtacatattgctttgatatcagcaccggaaaactcatccttggtcatgacaaac 1261 Query: 402 tcttccaggttcacatcatctgacaatgtcatctt 436 |||||||||||||||||||||| |||||||||||| Sbjct: 1260 tcttccaggttcacatcatctgccaatgtcatctt 1226
>dbj|D17789.1|RICHTBP2 Oryza sativa (japonica cultivar-group) mRNA for homologue of Tat binding protein, complete cds Length = 1609 Score = 283 bits (143), Expect = 2e-73 Identities = 197/215 (91%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1408 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 1349 Query: 282 gccttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagcca 341 |||||||||||||| || |||||||||||||| | ||| |||||||||||||| | ||| Sbjct: 1348 gccttcttgaagtcagcatgtgtcaccttcattcggcgttctctcaaagcaagaagtcca 1289 Query: 342 gattcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaac 401 | ||| || |||||||||||||| |||||||| |||||||||||||| |||||||| ||| Sbjct: 1288 gcttcagtacatattgctttgatatcagcaccggaaaactcatccttggtcatgacaaac 1229 Query: 402 tcttccaggttcacatcatctgacaatgtcatctt 436 |||||||||||||||||||||| |||||||||||| Sbjct: 1228 tcttccaggttcacatcatctgccaatgtcatctt 1194
>dbj|AK069811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030D05, full insert sequence Length = 1579 Score = 240 bits (121), Expect = 3e-60 Identities = 190/213 (89%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct: 1431 tcacatataaagcccttccggtacaccttccttcttcttgaacatgaccttctctttggc 1372 Query: 284 cttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccaga 343 ||||||||| ||||| |||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 1371 cttcttgaaatcggcatgtgtcaccttcattctgcgctcccttaaagcgagcaatccggc 1312 Query: 344 ttcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactc 403 || || |||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 1311 ctccgtacatattgctttgatgtcagcaccagaaaactcatccttggtcatcacaaactc 1252 Query: 404 ttccaggttcacatcatctgacaatgtcatctt 436 ||| ||||| |||||||||| |||||||||||| Sbjct: 1251 ttctaggttaacatcatctgccaatgtcatctt 1219
>dbj|AK058779.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-C01, full insert sequence Length = 651 Score = 240 bits (121), Expect = 3e-60 Identities = 190/213 (89%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct: 442 tcacatataaagcccttccggtacaccttccttcttcttgaacatgaccttctctttggc 383 Query: 284 cttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccaga 343 ||||||||| ||||| |||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 382 cttcttgaaatcggcatgtgtcaccttcattctgcgctcccttaaagcgagcaatccggc 323 Query: 344 ttcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactc 403 || || |||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 322 ctccgtacatattgctttgatgtcagcaccagaaaactcatccttggtcatcacaaactc 263 Query: 404 ttccaggttcacatcatctgacaatgtcatctt 436 ||| ||||| |||||||||| |||||||||||| Sbjct: 262 ttctaggttaacatcatctgccaatgtcatctt 230
>dbj|AB037154.1| Oryza sativa (japonica cultivar-group) OsRPT2b mRNA for 26S proteasome regulatory particle triple-A ATPase subunit2b, complete cds Length = 1616 Score = 240 bits (121), Expect = 3e-60 Identities = 190/213 (89%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct: 1375 tcacatataaagcccttccggtacaccttccttcttcttgaacatgaccttctctttggc 1316 Query: 284 cttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccaga 343 ||||||||| ||||| |||||||||||||| |||||||| || ||||| ||||| || | Sbjct: 1315 cttcttgaaatcggcatgtgtcaccttcattctgcgctcccttaaagcgagcaatccggc 1256 Query: 344 ttcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactc 403 || || |||||||||||||||||||||||||||||||||||||| ||||| || ||||| Sbjct: 1255 ctccgtacatattgctttgatgtcagcaccagaaaactcatccttggtcatcacaaactc 1196 Query: 404 ttccaggttcacatcatctgacaatgtcatctt 436 ||| ||||| |||||||||| |||||||||||| Sbjct: 1195 ttctaggttaacatcatctgccaatgtcatctt 1163
>gb|AY105318.1| Zea mays PCO073117 mRNA sequence Length = 866 Score = 161 bits (81), Expect = 2e-36 Identities = 159/185 (85%) Strand = Plus / Minus Query: 237 ccctccggcacaccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcg 296 ||||||||||| ||||| |||||||||||||| ||||| || || |||||||||||||| Sbjct: 542 ccctccggcacgccttctttcttcttgaacataaccttttctttggccttcttgaagtct 483 Query: 297 gcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatatt 356 || || ||||||||||||| ||||||||||||||||||||||||| ||| || || || Sbjct: 482 gcatgcgtcaccttcatccgccgctctctcaaagcaagcaagccagcttcagtacaaatg 423 Query: 357 gctttgatgtcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcaca 416 || |||||||||||||| ||||||||||| || | ||| | |||||||| ||||| ||| Sbjct: 422 gccttgatgtcagcacctgaaaactcatcttttgacataataaactcttctaggtttaca 363 Query: 417 tcatc 421 ||||| Sbjct: 362 tcatc 358
>gb|AY108940.1| Zea mays PCO101909 mRNA sequence Length = 961 Score = 159 bits (80), Expect = 9e-36 Identities = 167/196 (85%) Strand = Plus / Minus Query: 226 acatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgcct 285 ||||||| || || ||||| |||||||||||||||||| |||| |||||||||||||||| Sbjct: 720 acatgtagagaccatccggaacaccttccttcttcttgtacatcaccttctcctttgcct 661 Query: 286 tcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccagatt 345 ||||||| || || || ||||||||||| ||||| ||||| || |||||||| |||| | Sbjct: 660 tcttgaaatctgcatgggtcaccttcattctgcgttctcttaaggcaagcaatccagcct 601 Query: 346 cggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactctt 405 | ||||| ||||| || || |||||||| |||||||| || || ||||| || ||||||| Sbjct: 600 ctgtgcagattgccttaatatcagcacccgaaaactcgtctttggtcataacaaactctt 541 Query: 406 ccaggttcacatcatc 421 ||| |||||||||||| Sbjct: 540 ccaagttcacatcatc 525
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 149 bits (75), Expect = 9e-33 Identities = 117/131 (89%) Strand = Plus / Plus Query: 306 accttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatg 365 |||||||| | ||| |||||||||||||| | |||| ||| || |||||||||||||| Sbjct: 29382899 accttcattcggcgttctctcaaagcaagaagtccagcttcagtacatattgctttgata 29382958 Query: 366 tcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatcatctgac 425 |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| | Sbjct: 29382959 tcagcaccggaaaactcatccttggtcatgacaaactcttccaggttcacatcatctgcc 29383018 Query: 426 aatgtcatctt 436 ||||||||||| Sbjct: 29383019 aatgtcatctt 29383029 Score = 143 bits (72), Expect = 6e-31 Identities = 84/88 (95%) Strand = Plus / Plus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 29382506 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 29382565 Query: 282 gccttcttgaagtcggcgtgtgtcacct 309 |||||||||||||| || |||||||||| Sbjct: 29382566 gccttcttgaagtcagcatgtgtcacct 29382593
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 149 bits (75), Expect = 9e-33 Identities = 117/131 (89%) Strand = Plus / Plus Query: 306 accttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatg 365 |||||||| | ||| |||||||||||||| | |||| ||| || |||||||||||||| Sbjct: 45821 accttcattcggcgttctctcaaagcaagaagtccagcttcagtacatattgctttgata 45880 Query: 366 tcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatcatctgac 425 |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||| | Sbjct: 45881 tcagcaccggaaaactcatccttggtcatgacaaactcttccaggttcacatcatctgcc 45940 Query: 426 aatgtcatctt 436 ||||||||||| Sbjct: 45941 aatgtcatctt 45951 Score = 143 bits (72), Expect = 6e-31 Identities = 84/88 (95%) Strand = Plus / Plus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctccttt 281 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 45428 catcacatgtaaagaccctccggcacaccttccttcttcttgaacatcaccttctccttt 45487 Query: 282 gccttcttgaagtcggcgtgtgtcacct 309 |||||||||||||| || |||||||||| Sbjct: 45488 gccttcttgaagtcagcatgtgtcacct 45515
>gb|DQ222507.1| Solanum tuberosum clone 115D06 26S proteasome subunit 4-like mRNA, complete cds Length = 1581 Score = 133 bits (67), Expect = 5e-28 Identities = 175/211 (82%) Strand = Plus / Minus Query: 226 acatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgcct 285 |||||||||| || || ||||| || || |||||||||||||| ||||| || ||||||| Sbjct: 1370 acatgtaaagtccttctggcactccctctttcttcttgaacatcaccttatcttttgcct 1311 Query: 286 tcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccagatt 345 ||||||| || || || |||||||||| | || ||||| | ||||||||| |||| || Sbjct: 1310 tcttgaaatctgcatgaatcaccttcatacgccgttctcttagagcaagcaatccagctt 1251 Query: 346 cggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactctt 405 | || |||||||| ||||| ||||| |||||||| |||||||| ||||| || || |||| Sbjct: 1250 cagtacatattgccttgatatcagctccagaaaattcatccttggtcataacaaattctt 1191 Query: 406 ccaggttcacatcatctgacaatgtcatctt 436 | ||||| |||||||| ||||| |||||||| Sbjct: 1190 ctaggttgacatcatcagacaaagtcatctt 1160
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 133 bits (67), Expect = 5e-28 Identities = 115/131 (87%) Strand = Plus / Minus Query: 306 accttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatg 365 |||||||| |||||||| || ||||| ||||| || | || || ||||||||||||||| Sbjct: 10437656 accttcattctgcgctcccttaaagcgagcaatccggcctccgtacatattgctttgatg 10437597 Query: 366 tcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatcatctgac 425 ||||||||||||||||||||||| ||||| || |||||||| ||||| |||||||||| | Sbjct: 10437596 tcagcaccagaaaactcatccttggtcatcacaaactcttctaggttaacatcatctgcc 10437537 Query: 426 aatgtcatctt 436 ||||||||||| Sbjct: 10437536 aatgtcatctt 10437526 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct: 10437925 tcacatataaagcccttccggtacaccttccttcttcttgaacatgaccttctctttggc 10437866 Query: 284 cttcttgaagtcggcgtgtgtcacct 309 ||||||||| ||||| |||||||||| Sbjct: 10437865 cttcttgaaatcggcatgtgtcacct 10437840 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 aagaaaaggttacaaacaaatttg 128 |||||||||| ||||||||||||| Sbjct: 34850685 aagaaaaggtaacaaacaaatttg 34850708
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 133 bits (67), Expect = 5e-28 Identities = 115/131 (87%) Strand = Plus / Minus Query: 306 accttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatg 365 |||||||| |||||||| || ||||| ||||| || | || || ||||||||||||||| Sbjct: 94209 accttcattctgcgctcccttaaagcgagcaatccggcctccgtacatattgctttgatg 94150 Query: 366 tcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatcatctgac 425 ||||||||||||||||||||||| ||||| || |||||||| ||||| |||||||||| | Sbjct: 94149 tcagcaccagaaaactcatccttggtcatcacaaactcttctaggttaacatcatctgcc 94090 Query: 426 aatgtcatctt 436 ||||||||||| Sbjct: 94089 aatgtcatctt 94079 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct: 94478 tcacatataaagcccttccggtacaccttccttcttcttgaacatgaccttctctttggc 94419 Query: 284 cttcttgaagtcggcgtgtgtcacct 309 ||||||||| ||||| |||||||||| Sbjct: 94418 cttcttgaaatcggcatgtgtcacct 94393
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 133 bits (67), Expect = 5e-28 Identities = 115/131 (87%) Strand = Plus / Minus Query: 306 accttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatg 365 |||||||| |||||||| || ||||| ||||| || | || || ||||||||||||||| Sbjct: 10435757 accttcattctgcgctcccttaaagcgagcaatccggcctccgtacatattgctttgatg 10435698 Query: 366 tcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatcatctgac 425 ||||||||||||||||||||||| ||||| || |||||||| ||||| |||||||||| | Sbjct: 10435697 tcagcaccagaaaactcatccttggtcatcacaaactcttctaggttaacatcatctgcc 10435638 Query: 426 aatgtcatctt 436 ||||||||||| Sbjct: 10435637 aatgtcatctt 10435627 Score = 115 bits (58), Expect = 1e-22 Identities = 79/86 (91%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || || Sbjct: 10436026 tcacatataaagcccttccggtacaccttccttcttcttgaacatgaccttctctttggc 10435967 Query: 284 cttcttgaagtcggcgtgtgtcacct 309 ||||||||| ||||| |||||||||| Sbjct: 10435966 cttcttgaaatcggcatgtgtcacct 10435941 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 aagaaaaggttacaaacaaatttg 128 |||||||||| ||||||||||||| Sbjct: 34940757 aagaaaaggtaacaaacaaatttg 34940780
>ref|NM_127572.2| Arabidopsis thaliana ATP binding / ATPase/ hydrolase/ nucleoside-triphosphatase/ nucleotide binding AT2G20140 mRNA, complete cds Length = 1610 Score = 125 bits (63), Expect = 1e-25 Identities = 177/215 (82%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||||||||| || || || || ||||| |||||||||||||| ||||||||||| || Sbjct: 1368 tcacatgtaaagaccttcaggaactccttctttcttcttgaacataaccttctccttcgc 1309 Query: 284 cttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccaga 343 |||||||||||| | || ||||| ||||||| |||||||| | |||||||| |||| Sbjct: 1308 cttcttgaagtccacatgcgtcactttcatccgacgctctctaagagcaagcagaccagc 1249 Query: 344 ttcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactc 403 ||| ||||||||||| || || ||||| || || ||||| || || ||||| || ||||| Sbjct: 1248 ttctgtgcatattgcctttatatcagctcctgagaactcgtcttttgtcattacaaactc 1189 Query: 404 ttccaggttcacatcatctgacaatgtcatctttg 438 ||| | ||||||||| || | ||| |||||||||| Sbjct: 1188 ttctaagttcacatcttcagccaaagtcatctttg 1154
>gb|AY056335.1| Arabidopsis thaliana putative 26S proteasome subunit 4 (At2g20140) mRNA, complete cds Length = 1363 Score = 125 bits (63), Expect = 1e-25 Identities = 177/215 (82%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||||||||| || || || || ||||| |||||||||||||| ||||||||||| || Sbjct: 1332 tcacatgtaaagaccttcaggaactccttctttcttcttgaacataaccttctccttcgc 1273 Query: 284 cttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccaga 343 |||||||||||| | || ||||| ||||||| |||||||| | |||||||| |||| Sbjct: 1272 cttcttgaagtccacatgcgtcactttcatccgacgctctctaagagcaagcagaccagc 1213 Query: 344 ttcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactc 403 ||| ||||||||||| || || ||||| || || ||||| || || ||||| || ||||| Sbjct: 1212 ttctgtgcatattgcctttatatcagctcctgagaactcgtcttttgtcattacaaactc 1153 Query: 404 ttccaggttcacatcatctgacaatgtcatctttg 438 ||| | ||||||||| || | ||| |||||||||| Sbjct: 1152 ttctaagttcacatcttcagccaaagtcatctttg 1118
>gb|AY035072.1| Arabidopsis thaliana putative 26S proteasome subunit 4 (At2g20140) mRNA, complete cds Length = 1586 Score = 125 bits (63), Expect = 1e-25 Identities = 177/215 (82%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||||||||| || || || || ||||| |||||||||||||| ||||||||||| || Sbjct: 1350 tcacatgtaaagaccttcaggaactccttctttcttcttgaacataaccttctccttcgc 1291 Query: 284 cttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccaga 343 |||||||||||| | || ||||| ||||||| |||||||| | |||||||| |||| Sbjct: 1290 cttcttgaagtccacatgcgtcactttcatccgacgctctctaagagcaagcagaccagc 1231 Query: 344 ttcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactc 403 ||| ||||||||||| || || ||||| || || ||||| || || ||||| || ||||| Sbjct: 1230 ttctgtgcatattgcctttatatcagctcctgagaactcgtcttttgtcattacaaactc 1171 Query: 404 ttccaggttcacatcatctgacaatgtcatctttg 438 ||| | ||||||||| || | ||| |||||||||| Sbjct: 1170 ttctaagttcacatcttcagccaaagtcatctttg 1136
>gb|AF372977.1|AF372977 Arabidopsis thaliana At2g20140/T2G17.6 mRNA, complete cds Length = 1578 Score = 125 bits (63), Expect = 1e-25 Identities = 177/215 (82%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||||||||| || || || || ||||| |||||||||||||| ||||||||||| || Sbjct: 1355 tcacatgtaaagaccttcaggaactccttctttcttcttgaacataaccttctccttcgc 1296 Query: 284 cttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccaga 343 |||||||||||| | || ||||| ||||||| |||||||| | |||||||| |||| Sbjct: 1295 cttcttgaagtccacatgcgtcactttcatccgacgctctctaagagcaagcagaccagc 1236 Query: 344 ttcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactc 403 ||| ||||||||||| || || ||||| || || ||||| || || ||||| || ||||| Sbjct: 1235 ttctgtgcatattgcctttatatcagctcctgagaactcgtcttttgtcattacaaactc 1176 Query: 404 ttccaggttcacatcatctgacaatgtcatctttg 438 ||| | ||||||||| || | ||| |||||||||| Sbjct: 1175 ttctaagttcacatcttcagccaaagtcatctttg 1141
>gb|AY087584.1| Arabidopsis thaliana clone 36815 mRNA, complete sequence Length = 1478 Score = 125 bits (63), Expect = 1e-25 Identities = 177/215 (82%) Strand = Plus / Minus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||||||||| || || || || ||||| |||||||||||||| ||||||||||| || Sbjct: 1358 tcacatgtaaagaccttcaggaactccttctttcttcttgaacataaccttctccttcgc 1299 Query: 284 cttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccaga 343 |||||||||||| | || ||||| ||||||| |||||||| | |||||||| |||| Sbjct: 1298 cttcttgaagtccacatgcgtcactttcatccgacgctctctaagagcaagcagaccagc 1239 Query: 344 ttcggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactc 403 ||| ||||||||||| || || ||||| || || ||||| || || ||||| || ||||| Sbjct: 1238 ttctgtgcatattgcctttatatcagctcctgagaactcgtcttttgtcattacaaactc 1179 Query: 404 ttccaggttcacatcatctgacaatgtcatctttg 438 ||| | ||||||||| || | ||| |||||||||| Sbjct: 1178 ttctaagttcacatcttcagccaaagtcatctttg 1144
>gb|AY105631.1| Zea mays PCO101908 mRNA sequence Length = 1272 Score = 105 bits (53), Expect = 1e-19 Identities = 158/193 (81%) Strand = Plus / Minus Query: 226 acatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgcct 285 ||||||| || || ||||| |||||||||||||||||| |||| |||||||||||||| | Sbjct: 989 acatgtagagaccatccggaacaccttccttcttcttgtacatcaccttctcctttgctt 930 Query: 286 tcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccagatt 345 ||||||| || || || ||||| ||||| || || ||||| || || ||||| |||| | Sbjct: 929 tcttgaaatctgcatgggtcactttcattctacgttctcttaaggcgagcaatccagcct 870 Query: 346 cggtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactctt 405 | ||||| || || || || ||||| || || |||||||| || ||||| || ||||||| Sbjct: 869 ccgtgcagatggccttaatatcagcgcccgagaactcatctttggtcataacaaactctt 810 Query: 406 ccaggttcacatc 418 ||| ||||||||| Sbjct: 809 ccaagttcacatc 797
>gb|AF432345.1| Tortula ruralis 26S proteasome regulatory subunit IV (RPT2) mRNA, complete cds Length = 1845 Score = 97.6 bits (49), Expect = 3e-17 Identities = 142/173 (82%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcacc 308 |||||||||||||| |||| || ||||| || |||||||| || || ||||| |||||| Sbjct: 1502 ccttccttcttcttatacatcactttctctttggccttcttaaaatcagcgtgcgtcacc 1443 Query: 309 ttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatgtca 368 ||||| | |||||| | ||| ||||| | |||| || || ||||| ||||||||||| Sbjct: 1442 ttcatacggcgctcacgcaatgcaagaagaccagcctcagtacatatagctttgatgtcg 1383 Query: 369 gcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatcatc 421 |||||||| || |||||||||||||| || || || |||||||| |||||||| Sbjct: 1382 gcaccagagaattcatccttagtcatcacaaattcctccaggtttacatcatc 1330
>emb|BX819727.1|CNS0A8HI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZD02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1465 Score = 93.7 bits (47), Expect = 5e-16 Identities = 141/171 (82%), Gaps = 1/171 (0%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaac-atgaccttctcctttgccttcttgaagtcggcgtgtgtcac 307 ||||| |||||||||||| || ||||||||||| |||||||||||||| | || ||||| Sbjct: 1349 ccttctttcttcttgaactataaccttctccttcgccttcttgaagtccacatgcgtcac 1290 Query: 308 cttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatgtc 367 ||||||| |||||||| | |||||||| |||| ||| ||||||||||| || || || Sbjct: 1289 tttcatccgacgctctctaagagcaagcagaccagcttctgtgcatattgcctttatatc 1230 Query: 368 agcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatc 418 ||| || || ||||| || || ||||| || |||||||| | ||||||||| Sbjct: 1229 agctcctgagaactcgtcttttgtcattacaaactcttctaagttcacatc 1179
>gb|AC161749.3| Medicago truncatula chromosome 7 BAC clone mth2-182g1, complete sequence Length = 47909 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 306 accttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatg 365 |||||||| | ||| |||| |||||||| ||||||| |||||| ||||||||||| || Sbjct: 36979 accttcattcggcgttctcgtaaagcaagtaagccagcttcggtacatattgcttttata 37038 Query: 366 tcagcaccagaaaactcatccttagtcatgacgaactcttc 406 ||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 37039 tcagctccagagaactcatccttagtcatgacaaattcttc 37079
>gb|AC150776.2| Medicago truncatula chromosome 7 BAC clone mte1-45n16, complete sequence Length = 107886 Score = 89.7 bits (45), Expect = 7e-15 Identities = 87/101 (86%) Strand = Plus / Plus Query: 306 accttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatg 365 |||||||| | ||| |||| |||||||| ||||||| |||||| ||||||||||| || Sbjct: 8137 accttcattcggcgttctcgtaaagcaagtaagccagcttcggtacatattgcttttata 8196 Query: 366 tcagcaccagaaaactcatccttagtcatgacgaactcttc 406 ||||| ||||| |||||||||||||||||||| || ||||| Sbjct: 8197 tcagctccagagaactcatccttagtcatgacaaattcttc 8237
>gb|AC006081.4| Arabidopsis thaliana chromosome 2 clone T2G17 map mi148, complete sequence Length = 97814 Score = 79.8 bits (40), Expect = 7e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 224 tcacatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgc 283 |||||||||||| || || || || ||||| |||||||||||||| ||||||||||| || Sbjct: 23895 tcacatgtaaagaccttcaggaactccttctttcttcttgaacataaccttctccttcgc 23954 Query: 284 cttcttgaagtc 295 |||||||||||| Sbjct: 23955 cttcttgaagtc 23966 Score = 60.0 bits (30), Expect = 6e-06 Identities = 105/130 (80%) Strand = Plus / Plus Query: 309 ttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatgtca 368 ||||||| |||||||| | |||||||| |||| ||| ||||||||||| || || ||| Sbjct: 24073 ttcatccgacgctctctaagagcaagcagaccagcttctgtgcatattgcctttatatca 24132 Query: 369 gcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatcatctgacaat 428 || || || ||||| || || ||||| || |||||||| | ||||||||| || | ||| Sbjct: 24133 gctcctgagaactcgtcttttgtcattacaaactcttctaagttcacatcttcagccaaa 24192 Query: 429 gtcatctttg 438 |||||||||| Sbjct: 24193 gtcatctttg 24202
>dbj|AK058808.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-C05, full insert sequence Length = 251 Score = 77.8 bits (39), Expect = 3e-11 Identities = 42/43 (97%) Strand = Plus / Minus Query: 222 catcacatgtaaagcccctccggcacaccttccttcttcttga 264 |||||||||||||| |||||||||||||||||||||||||||| Sbjct: 50 catcacatgtaaagaccctccggcacaccttccttcttcttga 8
>ref|NM_119048.2| Arabidopsis thaliana RPT2A; ATPase AT4G29040 (RPT2A) mRNA, complete cds Length = 1574 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcacc 308 ||||| |||||||||||||| |||||||||||||| |||||||| || | ||||||||| Sbjct: 1373 ccttctttcttcttgaacataaccttctcctttgctttcttgaaatcaggatgtgtcacc 1314 Query: 309 ttcat 313 ||||| Sbjct: 1313 ttcat 1309
>gb|AY034975.1| Arabidopsis thaliana putative 26S proteasome subunit 4 (At4g29040) mRNA, complete cds Length = 1590 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcacc 308 ||||| |||||||||||||| |||||||||||||| |||||||| || | ||||||||| Sbjct: 1373 ccttctttcttcttgaacataaccttctcctttgctttcttgaaatcaggatgtgtcacc 1314 Query: 309 ttcat 313 ||||| Sbjct: 1313 ttcat 1309
>dbj|AB161192.1| Arabidopsis thaliana HLR mRNA for 26S proteasome subunit AtRPT2a, complete cds Length = 1574 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcacc 308 ||||| |||||||||||||| |||||||||||||| |||||||| || | ||||||||| Sbjct: 1373 ccttctttcttcttgaacataaccttctcctttgctttcttgaaatcaggatgtgtcacc 1314 Query: 309 ttcat 313 ||||| Sbjct: 1313 ttcat 1309
>gb|AF123391.1|AF123391 Arabidopsis thaliana 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA, complete cds Length = 1568 Score = 73.8 bits (37), Expect = 4e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcacc 308 ||||| |||||||||||||| |||||||||||||| |||||||| || | ||||||||| Sbjct: 1372 ccttctttcttcttgaacataaccttctcctttgctttcttgaaatcaggatgtgtcacc 1313 Query: 309 ttcat 313 ||||| Sbjct: 1312 ttcat 1308
>emb|AJ291500.1|BNA291500 Brassica napus homologue of SPH gene, AT4g29040 gene and AT4g29100 gene, clone SI13 Length = 14775 Score = 69.9 bits (35), Expect = 7e-09 Identities = 59/67 (88%) Strand = Plus / Minus Query: 226 acatgtaaagcccctccggcacaccttccttcttcttgaacatgaccttctcctttgcct 285 |||||||||| || || || |||||||| ||||| |||||||| |||||||||||||| | Sbjct: 4232 acatgtaaaggccttcaggaacaccttctttctttttgaacataaccttctcctttgctt 4173 Query: 286 tcttgaa 292 ||||||| Sbjct: 4172 tcttgaa 4166
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcacc 308 ||||| |||||||||||||| |||||||||||||| |||||||| || | ||||||||| Sbjct: 42441 ccttctttcttcttgaacataaccttctcctttgctttcttgaaatcaggatgtgtcacc 42382 Query: 309 t 309 | Sbjct: 42381 t 42381
>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project) Length = 97714 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcacc 308 ||||| |||||||||||||| |||||||||||||| |||||||| || | ||||||||| Sbjct: 67472 ccttctttcttcttgaacataaccttctcctttgctttcttgaaatcaggatgtgtcacc 67413 Query: 309 t 309 | Sbjct: 67412 t 67412
>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project) Length = 101679 Score = 65.9 bits (33), Expect = 1e-07 Identities = 54/61 (88%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcacc 308 ||||| |||||||||||||| |||||||||||||| |||||||| || | ||||||||| Sbjct: 25968 ccttctttcttcttgaacataaccttctcctttgctttcttgaaatcaggatgtgtcacc 25909 Query: 309 t 309 | Sbjct: 25908 t 25908
>emb|AJ293726.1|BNA293726 Brassica napus homologue of AT4g29030 gene, homologue of SPH gene, homologue of AT4g29040 gene (pseudogene) and homologue of AT4g29060 gene (pseudogene, partial) Length = 15378 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 249 ccttccttcttcttgaacatgaccttctcctttgccttcttgaa 292 ||||| |||||||||||||| |||||||||||||| |||||||| Sbjct: 12811 ccttctttcttcttgaacataaccttctcctttgctttcttgaa 12768 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 366 tcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatcatctgac 425 |||||||| || ||||| || || ||||| || |||||||||| ||||||||| || || Sbjct: 12630 tcagcacctgagaactcgtcttttgtcatcacaaactcttccaagttcacatcttccgag 12571 Query: 426 aatgtcatctttg 438 | ||||||||||| Sbjct: 12570 agtgtcatctttg 12558
>gb|BC063157.1| Rattus norvegicus peptidase (prosome, macropain) 26S subunit, ATPase 1, mRNA (cDNA clone MGC:72724 IMAGE:6919865), complete cds Length = 1586 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 285 ttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccagat 344 ||||||||||| ||| |||||| ||||||||||| || | || ||| | |||||||| Sbjct: 1289 ttcttgaagtcttcgtttgtcactttcatcctgcgttcccgcagagccatcaagccagcc 1230 Query: 345 tcggtgcatattgctttgatgtcagcaccaga 376 || ||||| ||||| ||||||||||| ||||| Sbjct: 1229 tctgtgcagattgccttgatgtcagccccaga 1198
>ref|NM_057123.1| Rattus norvegicus peptidase (prosome, macropain) 26S subunit, ATPase 1 (Psmc1), mRNA Length = 1556 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 285 ttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccagat 344 ||||||||||| ||| |||||| ||||||||||| || | || ||| | |||||||| Sbjct: 1277 ttcttgaagtcttcgtttgtcactttcatcctgcgttcccgcagagccatcaagccagcc 1218 Query: 345 tcggtgcatattgctttgatgtcagcaccaga 376 || ||||| ||||| ||||||||||| ||||| Sbjct: 1217 tctgtgcagattgccttgatgtcagccccaga 1186
>dbj|D50696.1|RATPAS Rattus norvegicus mRNA for proteasomal ATPase (S4), complete cds Length = 1556 Score = 56.0 bits (28), Expect = 1e-04 Identities = 76/92 (82%) Strand = Plus / Minus Query: 285 ttcttgaagtcggcgtgtgtcaccttcatcctgcgctctctcaaagcaagcaagccagat 344 ||||||||||| ||| |||||| ||||||||||| || | || ||| | |||||||| Sbjct: 1277 ttcttgaagtcttcgtttgtcactttcatcctgcgttcccgcagagccatcaagccagcc 1218 Query: 345 tcggtgcatattgctttgatgtcagcaccaga 376 || ||||| ||||| ||||||||||| ||||| Sbjct: 1217 tctgtgcagattgccttgatgtcagccccaga 1186
>gb|BC071538.1| Danio rerio proteasome (prosome, macropain) 26S subunit, ATPase, 1b, mRNA (cDNA clone MGC:86923 IMAGE:6905970), complete cds Length = 1521 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 252 tccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcaccttc 311 |||| ||||||| ||| || |||||||| | |||||||||||| ||| || |||||| Sbjct: 1322 tcctgcttcttgtacagcacattctccttagacttcttgaagtcctcgttggtgaccttc 1263 Query: 312 atcctgcgctctc 324 ||||||||||||| Sbjct: 1262 atcctgcgctctc 1250
>ref|NM_001002091.1| Danio rerio proteasome (prosome, macropain) 26S subunit, ATPase, 1b (psmc1b), mRNA Length = 1521 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Minus Query: 252 tccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcaccttc 311 |||| ||||||| ||| || |||||||| | |||||||||||| ||| || |||||| Sbjct: 1322 tcctgcttcttgtacagcacattctccttagacttcttgaagtcctcgttggtgaccttc 1263 Query: 312 atcctgcgctctc 324 ||||||||||||| Sbjct: 1262 atcctgcgctctc 1250
>emb|AL935145.12| Zebrafish DNA sequence from clone CH211-173B9 in linkage group 20, complete sequence Length = 157156 Score = 50.1 bits (25), Expect = 0.006 Identities = 61/73 (83%) Strand = Plus / Plus Query: 252 tccttcttcttgaacatgaccttctcctttgccttcttgaagtcggcgtgtgtcaccttc 311 |||| ||||||| ||| || |||||||| | |||||||||||| ||| || |||||| Sbjct: 43787 tcctgcttcttgtacagcacattctccttagacttcttgaagtcctcgttggtgaccttc 43846 Query: 312 atcctgcgctctc 324 ||||||||||||| Sbjct: 43847 atcctgcgctctc 43859
>ref|XM_516855.1| PREDICTED: Pan troglodytes similar to protease (prosome, macropain) 26S subunit, ATPase 1 (LOC460826), mRNA Length = 565 Score = 46.1 bits (23), Expect = 0.097 Identities = 71/87 (81%) Strand = Plus / Minus Query: 348 gtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactcttcc 407 ||||| ||||| ||||||||||||||| | | ||||| |||||||| | || || ||| Sbjct: 268 gtgcagattgccttgatgtcagcaccaaagaggtcatctttagtcattatcaagtcgtcc 209 Query: 408 aggttcacatcatctgacaatgtcatc 434 ||||| |||||||| | || ||||||| Sbjct: 208 aggtttacatcatcggccagtgtcatc 182
>gb|AC128652.4| Homo sapiens 3 BAC RP11-20C6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 53194 Score = 46.1 bits (23), Expect = 0.097 Identities = 71/87 (81%) Strand = Plus / Plus Query: 348 gtgcatattgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactcttcc 407 ||||| ||||| ||||||||||||||| | | ||||| |||||||| | || || ||| Sbjct: 50227 gtgcagattgccttgatgtcagcaccaaagaggtcatctttagtcattatcaagtcgtcc 50286 Query: 408 aggttcacatcatctgacaatgtcatc 434 ||||| |||||||| | || ||||||| Sbjct: 50287 aggtttacatcatcggccagtgtcatc 50313
>gb|AC008774.7| Homo sapiens chromosome 5 clone CTD-2018M7, complete sequence Length = 128781 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Plus Query: 354 attgctttgatgtcagcaccagaaaactcatccttagtcatga 396 ||||| ||||||||||||||||| || ||||| |||| ||||| Sbjct: 42827 attgccttgatgtcagcaccagagaagtcatctttagccatga 42869
>gb|AC016638.9| Homo sapiens chromosome 5 clone RP11-365H8, complete sequence Length = 182823 Score = 46.1 bits (23), Expect = 0.097 Identities = 38/43 (88%) Strand = Plus / Minus Query: 354 attgctttgatgtcagcaccagaaaactcatccttagtcatga 396 ||||| ||||||||||||||||| || ||||| |||| ||||| Sbjct: 38780 attgccttgatgtcagcaccagagaagtcatctttagccatga 38738
>ref|XM_843431.1| PREDICTED: Canis familiaris similar to peptidase (prosome, macropain) 26S subunit, ATPase 1, transcript variant 2 (LOC478703), mRNA Length = 1576 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Minus Query: 360 ttgatgtcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatca 419 ||||||||||||||||| | |||||||||| ||||| || || |||||| ||||| || Sbjct: 1213 ttgatgtcagcaccagagaggtcatccttagccatgatcaagtcgtccagggtcacagca 1154 Query: 420 tc 421 || Sbjct: 1153 tc 1152
>ref|XM_851186.1| PREDICTED: Canis familiaris similar to peptidase (prosome, macropain) 26S subunit, ATPase 1, transcript variant 3 (LOC478703), mRNA Length = 1495 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Minus Query: 360 ttgatgtcagcaccagaaaactcatccttagtcatgacgaactcttccaggttcacatca 419 ||||||||||||||||| | |||||||||| ||||| || || |||||| ||||| || Sbjct: 1132 ttgatgtcagcaccagagaggtcatccttagccatgatcaagtcgtccagggtcacagca 1073 Query: 420 tc 421 || Sbjct: 1072 tc 1071
>gb|AY639765.1| Hordeum vulgare subsp. spontaneum cultivar PI 560558 FtsH-like protein gene, partial cds Length = 456 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ttctcctttgccttcttgaag 293 ||||||||||||||||||||| Sbjct: 333 ttctcctttgccttcttgaag 313
>gb|AY639735.1| Hordeum vulgare subsp. spontaneum cultivar PI 466252 FtsH-like protein gene, partial cds Length = 459 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ttctcctttgccttcttgaag 293 ||||||||||||||||||||| Sbjct: 337 ttctcctttgccttcttgaag 317
>emb|BX296545.5| Human DNA sequence from clone RP11-45O22 on chromosome 9 Contains a FK506 binding protein 4, 59kDa (FKBP4) pseudogene, a pseudogene similar to part of NAD(P) dependent steroid dehydrogenase-like (HSPC105) and a pseudogene similar to part of ATP synthase, H+ transporting, mitochondrial F1 omplex, alpha subunit, isoform 1, cardiac muscle (ATP5A1), complete sequence Length = 132383 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 cacatcatctgacaatgtcatcttt 437 |||||||| |||||||||||||||| Sbjct: 2163 cacatcatatgacaatgtcatcttt 2187
>emb|AL590812.9| Human DNA sequence from clone RP11-381G8 on chromosome 9 Contains a FK506 binding protein 4, 59kDa pseudogene (FKBP4), a pseudogene similar to part of NAD(P) dependent steroid dehydrogenase-like (HSPC105) and a pseudogene similar to part of ATP synthase alpha/beta family, complete sequence Length = 117400 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 413 cacatcatctgacaatgtcatcttt 437 |||||||| |||||||||||||||| Sbjct: 31591 cacatcatatgacaatgtcatcttt 31615
>emb|BX248355.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 2/8 Length = 341553 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 357 gctttgatgtcagcaccagaaaactcatc 385 ||||||| ||| ||||||||||||||||| Sbjct: 307802 gctttgaagtctgcaccagaaaactcatc 307830
>emb|BX664609.6| Human DNA sequence from clone RP11-111O3 on chromosome 9 Contains a S-phase kinase-associated protein 1A (p19A) (SKP1A) pseudogene and a pseduogene similar to part of a novel protein, complete sequence Length = 157893 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 413 cacatcatctgacaatgtcatcttt 437 |||||||| |||||||||||||||| Sbjct: 28114 cacatcatatgacaatgtcatcttt 28090
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ttctcctttgccttcttgaag 293 ||||||||||||||||||||| Sbjct: 27342892 ttctcctttgccttcttgaag 27342912 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 agtacaacaaactattcaatt 87 ||||||||||||||||||||| Sbjct: 26068395 agtacaacaaactattcaatt 26068375
>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0686E06 Length = 150474 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ttctcctttgccttcttgaag 293 ||||||||||||||||||||| Sbjct: 85719 ttctcctttgccttcttgaag 85739
>dbj|AP004008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1226_A12 Length = 113025 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 agtacaacaaactattcaatt 87 ||||||||||||||||||||| Sbjct: 106253 agtacaacaaactattcaatt 106233
>dbj|AP003517.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02 Length = 151636 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 67 agtacaacaaactattcaatt 87 ||||||||||||||||||||| Sbjct: 47640 agtacaacaaactattcaatt 47620
>ref|XM_312720.2| Anopheles gambiae str. PEST ENSANGP00000017106 (ENSANGG00000014617), partial mRNA Length = 1317 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Minus Query: 274 tctcctttgccttcttgaagtcggcgtgtgtcaccttcatcctgcgctc 322 ||||||||| |||||||||||| ||| ||||||||||| | |||||| Sbjct: 1267 tctcctttgacttcttgaagtcctcgttggtcaccttcattcggcgctc 1219
>dbj|AK072047.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G24, full insert sequence Length = 2183 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ttctcctttgccttcttgaag 293 ||||||||||||||||||||| Sbjct: 920 ttctcctttgccttcttgaag 900
>dbj|AK064913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000M12, full insert sequence Length = 2433 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ttctcctttgccttcttgaag 293 ||||||||||||||||||||| Sbjct: 1170 ttctcctttgccttcttgaag 1150
>dbj|AK060805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-F12, full insert sequence Length = 2276 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 ttctcctttgccttcttgaag 293 ||||||||||||||||||||| Sbjct: 980 ttctcctttgccttcttgaag 960
>gb|AC120871.12| Mus musculus chromosome 16, clone RP23-121E8, complete sequence Length = 218995 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 taagcttatgattcagtact 40 |||||||||||||||||||| Sbjct: 23460 taagcttatgattcagtact 23479
>gb|BC049471.1| Danio rerio proteasome (prosome, macropain) 26S subunit, ATPase, 1a, mRNA (cDNA clone MGC:56516 IMAGE:5913784), complete cds Length = 1749 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 345 tcggtgcatattgctttgatgtcagcaccaga 376 |||||||| || || ||||||||||||||||| Sbjct: 1495 tcggtgcaaatagccttgatgtcagcaccaga 1464
>gb|AC137128.17| Mus musculus chromosome 3, clone RP24-271G16, complete sequence Length = 182140 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ttcaggcgaagaaaaggttacaaa 120 ||||||| |||||||||||||||| Sbjct: 110920 ttcaggctaagaaaaggttacaaa 110943
>ref|NM_200033.1| Danio rerio proteasome (prosome, macropain) 26S subunit, ATPase, 1a (psmc1a), mRNA Length = 1749 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 345 tcggtgcatattgctttgatgtcagcaccaga 376 |||||||| || || ||||||||||||||||| Sbjct: 1495 tcggtgcaaatagccttgatgtcagcaccaga 1464
>gb|AC000121.1| Homo sapiens BAC clone CTA-249A12 from 7, complete sequence Length = 93163 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 aaatatattatcactacaca 187 |||||||||||||||||||| Sbjct: 85789 aaatatattatcactacaca 85808
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 aagaaaaggttacaaacaaatttg 128 |||||||||| ||||||||||||| Sbjct: 11965 aagaaaaggtaacaaacaaatttg 11942
>gb|AC132573.2| Mus musculus BAC clone RP24-410H24 from chromosome 15, complete sequence Length = 194219 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 gctctctcaaagcaagcaagccag 342 ||||||| |||||||||||||||| Sbjct: 133195 gctctctgaaagcaagcaagccag 133172
>gb|AC108837.8| Mus musculus chromosome 15, clone RP23-287P15, complete sequence Length = 226886 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 319 gctctctcaaagcaagcaagccag 342 ||||||| |||||||||||||||| Sbjct: 59573 gctctctgaaagcaagcaagccag 59550
>ref|XM_948324.1| Theileria annulata strain Ankara hypothetical protein (TA10000) partial mRNA Length = 4785 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 tccaaccattcaggcgaagaaaag 112 |||||||||||||||| ||||||| Sbjct: 2267 tccaaccattcaggcgcagaaaag 2290
>emb|AL732371.4| Human DNA sequence from clone RP11-2K15 on chromosome X Contains the 5' end of the REPS2 gene for RALBP1 associated Eps domain containing 2 and a chromobox homolog 5 (HP1 alpha homolog, Drosophila) (CBX5) pseudogene, complete sequence Length = 185152 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 caaagcaagcaagccagatt 345 |||||||||||||||||||| Sbjct: 106254 caaagcaagcaagccagatt 106235
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttccttcttcttgaacatg 269 |||||||||||||||||||| Sbjct: 3367224 cttccttcttcttgaacatg 3367205 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cttccttcttcttgaacatg 269 |||||||||||||||||||| Sbjct: 1614347 cttccttcttcttgaacatg 1614328
>gb|AC009634.9| Homo sapiens chromosome 8, clone RP11-413C18, complete sequence Length = 205638 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 acaattcatcacatgtaaag 235 |||||||||||||||||||| Sbjct: 187125 acaattcatcacatgtaaag 187144
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 394 tgacgaactcttccaggttc 413 |||||||||||||||||||| Sbjct: 1752027 tgacgaactcttccaggttc 1752046
>ref|NM_079745.2| Drosophila melanogaster Proteasome 26S subunit subunit 4 ATPase CG5289-RA (Pros26.4), mRNA Length = 1631 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 274 tctcctttgccttcttgaagtcggcgtgtgtcaccttcat 313 ||||||||| |||||||||||| ||| ||||||||||| Sbjct: 1469 tctcctttgacttcttgaagtcctcgttggtcaccttcat 1430
>gb|AC087533.7| Homo sapiens, clone RP11-89A4, complete sequence Length = 154179 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 216 acaattcatcacatgtaaag 235 |||||||||||||||||||| Sbjct: 47373 acaattcatcacatgtaaag 47392
>dbj|AK149418.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730007E04 product:unclassifiable, full insert sequence Length = 3376 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 taagcttatgattcagtact 40 |||||||||||||||||||| Sbjct: 77 taagcttatgattcagtact 58
>ref|XM_694176.1| PREDICTED: Danio rerio similar to Proteasome (prosome, macropain) 26S subunit, ATPase, 1 (LOC573830), mRNA Length = 1550 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 345 tcggtgcatattgctttgatgtcagcaccaga 376 |||||||| || || ||||||||||||||||| Sbjct: 902 tcggtgcaaatagccttgatgtcagcaccaga 871
>gb|AY058759.1| Drosophila melanogaster SD02658 full length cDNA Length = 1493 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 274 tctcctttgccttcttgaagtcggcgtgtgtcaccttcat 313 ||||||||| |||||||||||| ||| ||||||||||| Sbjct: 1353 tctcctttgacttcttgaagtcctcgttggtcaccttcat 1314
>dbj|AB169562.1| Macaca fascicularis brain cDNA, clone: QflA-13164, similar to human proteasome (prosome, macropain) 26S subunit, ATPase, 1(PSMC1), mRNA, RefSeq: NM_002802.2 Length = 1601 Score = 40.1 bits (20), Expect = 6.0 Identities = 56/68 (82%) Strand = Plus / Minus Query: 354 attgctttgatgtcagcaccagaaaactcatccttagtcatgacgaactcttccaggttc 413 ||||| ||||||||||||||||| | ||||| |||| ||||| || || |||||| | Sbjct: 1230 attgccttgatgtcagcaccagagaggtcatctttagccatgatcaagtcatccagggtt 1171 Query: 414 acatcatc 421 |||||||| Sbjct: 1170 acatcatc 1163
>dbj|AK054399.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330022H21 product:unclassifiable, full insert sequence Length = 2197 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 taagcttatgattcagtact 40 |||||||||||||||||||| Sbjct: 886 taagcttatgattcagtact 867
>gb|AC007929.8|AC007929 Drosophila melanogaster, chromosome 3R, region 95A-95C, BAC clone BACR05C11, complete sequence Length = 171376 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 274 tctcctttgccttcttgaagtcggcgtgtgtcaccttcat 313 ||||||||| |||||||||||| ||| ||||||||||| Sbjct: 95430 tctcctttgacttcttgaagtcctcgttggtcaccttcat 95469
>gb|AC154285.2| Mus musculus BAC clone RP23-452P8 from chromosome 16, complete sequence Length = 183796 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 cttccttcttcttgaacatg 269 |||||||||||||||||||| Sbjct: 157914 cttccttcttcttgaacatg 157933
>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence Length = 171376 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 105 aagaaaaggttacaaacaaatttg 128 |||||||||| ||||||||||||| Sbjct: 164795 aagaaaaggtaacaaacaaatttg 164772
>emb|AL672034.5| Mouse DNA sequence from clone RP23-461P10 on chromosome X, complete sequence Length = 199101 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 tacacaatgttgttctggta 201 |||||||||||||||||||| Sbjct: 179372 tacacaatgttgttctggta 179391
>gb|AC154408.2| Mus musculus BAC clone RP24-259A5 from 16, complete sequence Length = 158312 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 taagcttatgattcagtact 40 |||||||||||||||||||| Sbjct: 131132 taagcttatgattcagtact 131151
>gb|BT020983.1| Bos taurus proteasome (prosome, macropain) 26S subunit, ATPase, 1 (PSMC1), mRNA, complete cds Length = 1534 Score = 40.1 bits (20), Expect = 6.0 Identities = 56/68 (82%) Strand = Plus / Minus Query: 309 ttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatgtca 368 ||||| |||||||||||||| || | || |||| ||| || || ||||| |||||||| Sbjct: 1261 ttcattctgcgctctctcaaggccatcagaccagcttctgtacagattgccttgatgtcg 1202 Query: 369 gcaccaga 376 |||||||| Sbjct: 1201 gcaccaga 1194
>gb|AE003745.4| Drosophila melanogaster chromosome 3R, section 83 of 118 of the complete sequence Length = 230236 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Plus Query: 274 tctcctttgccttcttgaagtcggcgtgtgtcaccttcat 313 ||||||||| |||||||||||| ||| ||||||||||| Sbjct: 128322 tctcctttgacttcttgaagtcctcgttggtcaccttcat 128361
>gb|BC048953.1| Mus musculus zinc finger and BTB domain containing 20, mRNA (cDNA clone IMAGE:6484816) Length = 3171 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 taagcttatgattcagtact 40 |||||||||||||||||||| Sbjct: 862 taagcttatgattcagtact 843
>emb|CT027660.1| Medicago truncatula chromosome 5 clone mth4-7a11, COMPLETE SEQUENCE Length = 107624 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 accttccttcttcttgaaca 267 |||||||||||||||||||| Sbjct: 91969 accttccttcttcttgaaca 91988
>emb|AL954380.9| Mouse DNA sequence from clone RP23-156O9 on chromosome 2, complete sequence Length = 105996 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tttaagcttatgattcagta 38 |||||||||||||||||||| Sbjct: 104441 tttaagcttatgattcagta 104422
>gb|U39303.1|DMU39303 Drosophila melanogaster 26S proteasome subunit 4 ATPase mRNA, complete cds Length = 1497 Score = 40.1 bits (20), Expect = 6.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 274 tctcctttgccttcttgaagtcggcgtgtgtcaccttcat 313 ||||||||| |||||||||||| ||| ||||||||||| Sbjct: 1376 tctcctttgacttcttgaagtcctcgttggtcaccttcat 1337
>emb|AL772261.5| Mouse DNA sequence from clone RP23-276J11 on chromosome 4, complete sequence Length = 191041 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ccttcatcctgcgctctctc 326 |||||||||||||||||||| Sbjct: 106398 ccttcatcctgcgctctctc 106417
>emb|AL845319.10| Mouse DNA sequence from clone RP23-429I7 on chromosome 2, complete sequence Length = 150222 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 tttaagcttatgattcagta 38 |||||||||||||||||||| Sbjct: 445 tttaagcttatgattcagta 426
>ref|NM_001014855.1| Bos taurus proteasome 26S ATPase subunit 1 (PSMC1), mRNA Length = 1534 Score = 40.1 bits (20), Expect = 6.0 Identities = 56/68 (82%) Strand = Plus / Minus Query: 309 ttcatcctgcgctctctcaaagcaagcaagccagattcggtgcatattgctttgatgtca 368 ||||| |||||||||||||| || | || |||| ||| || || ||||| |||||||| Sbjct: 1261 ttcattctgcgctctctcaaggccatcagaccagcttctgtacagattgccttgatgtcg 1202 Query: 369 gcaccaga 376 |||||||| Sbjct: 1201 gcaccaga 1194
>dbj|AP001017.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-712C7, complete sequences Length = 131000 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 aaaccagggaatatatccca 160 |||||||||||||||||||| Sbjct: 111074 aaaccagggaatatatccca 111055 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,210,005 Number of Sequences: 3902068 Number of extensions: 4210005 Number of successful extensions: 105554 Number of sequences better than 10.0: 101 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105171 Number of HSP's gapped (non-prelim): 381 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
