ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 4e-26
2dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response fac... 127 4e-26
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
6gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete se... 44 0.41
7gb|AC116502.11| Mus musculus chromosome 13, clone RP24-300G17, c... 42 1.6
8emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 42 1.6
9gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, com... 42 1.6
10ref|NM_170949.2| Caenorhabditis elegans Enhancer of Ksr-1 Lethal... 42 1.6
11emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, com... 42 1.6
12emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chro... 42 1.6
13ref|XM_634067.1| Dictyostelium discoideum hypothetical protein (... 40 6.5
14ref|XM_628881.1| Dictyostelium discoideum putative STE20 family ... 40 6.5
15gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome ... 40 6.5
16gb|AY812171.1| Schistosoma japonicum SJCHGC04041 protein mRNA, p... 40 6.5
17gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome ... 40 6.5
18gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone... 40 6.5
19emb|Z97204.1|SPBC31F10 S.pombe chromosome II cosmid c31F10 40 6.5
20emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chr... 40 6.5
21gb|DP000004.1| Lemur catta target 1 genomic scaffold 40 6.5
22ref|NM_001022500.1| Schizosaccharomyces pombe 972h- hypothetical... 40 6.5
23dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
24gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, com... 40 6.5
25gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence 40 6.5
26gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosom... 40 6.5
27dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
28dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
29gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complet... 40 6.5
30dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 6.5
31emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chr... 40 6.5

>dbj|AK100322.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H12, full
            insert sequence
          Length = 3026

 Score =  127 bits (64), Expect = 4e-26
 Identities = 94/104 (90%)
 Strand = Plus / Minus

                                                                        
Query: 376  tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctgaaa 435
            |||||||| || || ||||||||  ||||||||||||||||||||||||| |||||||||
Sbjct: 2716 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctgaaa 2657

                                                        
Query: 436  ggttcatctccagtgtgtttgagcgccccggctgcatcacggta 479
            ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 2656 ggttcatctccagtgtgcttgagtgccccagccgcatcacggta 2613



to top

>dbj|AB071299.1| Oryza sativa OsARF10 mRNA for auxin response factor 10, partial cds
          Length = 2100

 Score =  127 bits (64), Expect = 4e-26
 Identities = 94/104 (90%)
 Strand = Plus / Minus

                                                                        
Query: 376  tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctgaaa 435
            |||||||| || || ||||||||  ||||||||||||||||||||||||| |||||||||
Sbjct: 2087 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctgaaa 2028

                                                        
Query: 436  ggttcatctccagtgtgtttgagcgccccggctgcatcacggta 479
            ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 2027 ggttcatctccagtgtgcttgagtgccccagccgcatcacggta 1984



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                  
Query: 430      ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggta 479
                ||||||||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 28205652 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggta 28205603



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 376      tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 432
                |||||||| || || ||||||||  ||||||||||||||||||||||||| ||||||
Sbjct: 28206242 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 28206186



to top

>dbj|AP005395.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0623A10
          Length = 156517

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                              
Query: 430  ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggta 479
            ||||||||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 3681 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggta 3632



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 376  tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 432
            |||||||| || || ||||||||  ||||||||||||||||||||||||| ||||||
Sbjct: 4271 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 4215



to top

>dbj|AP003766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0009H10
          Length = 175754

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 46/50 (92%)
 Strand = Plus / Minus

                                                                
Query: 430    ctgaaaggttcatctccagtgtgtttgagcgccccggctgcatcacggta 479
              ||||||||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 136558 ctgaaaggttcatctccagtgtgcttgagtgccccagccgcatcacggta 136509



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                       
Query: 376    tcgccgctcgtgtccgttagtatcgtcagcctacgcgccgtcttcgtgaagtcgctg 432
              |||||||| || || ||||||||  ||||||||||||||||||||||||| ||||||
Sbjct: 137148 tcgccgcttgtatctgttagtatattcagcctacgcgccgtcttcgtgaactcgctg 137092



to top

>gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete sequence
          Length = 44699

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 161   tctaataatcggagaaaaactg 182
             ||||||||||||||||||||||
Sbjct: 18426 tctaataatcggagaaaaactg 18405



to top

>gb|AC116502.11| Mus musculus chromosome 13, clone RP24-300G17, complete sequence
          Length = 170654

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 58     ttactactactacatcatcataatgggta 86
              |||||||||||||| |||||| |||||||
Sbjct: 109904 ttactactactacaacatcattatgggta 109932



to top

>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 210    gacttgcatccaggccgcggg 230
              |||||||||||||||||||||
Sbjct: 327623 gacttgcatccaggccgcggg 327603



to top

>gb|AC091010.5| Homo sapiens chromosome 8, clone RP11-680F23, complete sequence
          Length = 186881

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 85    taccagccaacacaacgaaagaaagaaaa 113
             |||||||||| |||| |||||||||||||
Sbjct: 96787 taccagccaaaacaaggaaagaaagaaaa 96759



to top

>ref|NM_170949.2| Caenorhabditis elegans Enhancer of Ksr-1 Lethality family member
            (ekl-4) (ekl-4) mRNA, complete cds
          Length = 1697

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 58   ttactactactacatcatcat 78
            |||||||||||||||||||||
Sbjct: 1370 ttactactactacatcatcat 1390



to top

>emb|AL132876.4|CEY105E8A Caenorhabditis elegans YAC Y105E8A, complete sequence
          Length = 277607

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 58     ttactactactacatcatcat 78
              |||||||||||||||||||||
Sbjct: 143234 ttactactactacatcatcat 143254



to top

>emb|BX000344.15| Mouse DNA sequence from clone RP24-88L6 on chromosome 2, complete
             sequence
          Length = 118767

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 102   aaagaaagaaaagtgtccaaggatc 126
             |||||||||||| ||||||||||||
Sbjct: 24496 aaagaaagaaaaatgtccaaggatc 24472



to top

>ref|XM_634067.1| Dictyostelium discoideum hypothetical protein (DDB0185452), partial
           mRNA
          Length = 1542

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  tactactactacatcatcat 78
           ||||||||||||||||||||
Sbjct: 885 tactactactacatcatcat 904



to top

>ref|XM_628881.1| Dictyostelium discoideum putative STE20 family protein kinase
            (DDB0229414), partial mRNA
          Length = 2781

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   tactactactacatcatcat 78
            ||||||||||||||||||||
Sbjct: 1728 tactactactacatcatcat 1747



to top

>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence
          Length = 206456

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    aaagaaagaaaagtgtccaa 121
              ||||||||||||||||||||
Sbjct: 104014 aaagaaagaaaagtgtccaa 103995



to top

>gb|AY812171.1| Schistosoma japonicum SJCHGC04041 protein mRNA, partial cds
          Length = 664

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  tactactactacatcatcat 78
           ||||||||||||||||||||
Sbjct: 521 tactactactacatcatcat 540



to top

>gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome 3, complete sequence
          Length = 195767

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    agccaacacaacgaaagaaagaaa 112
             ||||||||||| ||||||||||||
Sbjct: 59833 agccaacacaaagaaagaaagaaa 59856



to top

>gb|AC104323.27| Mus musculus strain C57BL/6J chromosome 17 clone rp23-114o8 map 17,
             complete sequence
          Length = 202430

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   aaagaaagaaaagtgtccaa 121
             ||||||||||||||||||||
Sbjct: 37575 aaagaaagaaaagtgtccaa 37556



to top

>emb|Z97204.1|SPBC31F10 S.pombe chromosome II cosmid c31F10
          Length = 36444

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   gtacaagtggcgaaagagct 338
             ||||||||||||||||||||
Sbjct: 33863 gtacaagtggcgaaagagct 33844



to top

>emb|AL928772.8| Mouse DNA sequence from clone RP23-247I15 on chromosome 4 Contains the 3'
              end of a novel gene and a novel gene, complete sequence
          Length = 174731

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    gaaaaactgaagctgcctgc 193
              ||||||||||||||||||||
Sbjct: 146098 gaaaaactgaagctgcctgc 146117



to top

>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    aagagcttgcttccttcctc 351
              ||||||||||||||||||||
Sbjct: 730474 aagagcttgcttccttcctc 730455



to top

>ref|NM_001022500.1| Schizosaccharomyces pombe 972h- hypothetical protein
           (SPBC31F10.17c), partial mRNA
          Length = 408

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 319 gtacaagtggcgaaagagct 338
           ||||||||||||||||||||
Sbjct: 118 gtacaagtggcgaaagagct 137



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 34       accgccatggattccaagcc 53
                ||||||||||||||||||||
Sbjct: 33086505 accgccatggattccaagcc 33086486



to top

>gb|AC099518.3| Homo sapiens chromosome 16 clone RP11-626G11, complete sequence
          Length = 216264

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    gaaaaactgaagctgcctgc 193
              ||||||||||||||||||||
Sbjct: 168486 gaaaaactgaagctgcctgc 168467



to top

>gb|AC123542.4| Lemur catta clone LB2-136L13, complete sequence
          Length = 158703

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   aagagcttgcttccttcctc 351
             ||||||||||||||||||||
Sbjct: 73910 aagagcttgcttccttcctc 73891



to top

>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete
             sequence
          Length = 132103

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   agaaaaactgaagctgcctg 192
             ||||||||||||||||||||
Sbjct: 20585 agaaaaactgaagctgcctg 20604



to top

>dbj|AP004846.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1293_A01
          Length = 139121

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     accgccatggattccaagcc 53
              ||||||||||||||||||||
Sbjct: 132445 accgccatggattccaagcc 132426



to top

>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1369_G08
          Length = 104190

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 34   accgccatggattccaagcc 53
            ||||||||||||||||||||
Sbjct: 2165 accgccatggattccaagcc 2146



to top

>gb|AC134246.4| Mus musculus BAC clone RP23-199B2 from 3, complete sequence
          Length = 206439

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 89     agccaacacaacgaaagaaagaaa 112
              ||||||||||| ||||||||||||
Sbjct: 185502 agccaacacaaagaaagaaagaaa 185525



to top

>dbj|AP006431.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT38F20, TM0328,
             complete sequence
          Length = 119346

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    acaacgaaagaaagaaaagt 115
             ||||||||||||||||||||
Sbjct: 96893 acaacgaaagaaagaaaagt 96912



to top

>emb|AL513345.20| Mouse DNA sequence from clone RP23-129N7 on chromosome 15, complete
              sequence
          Length = 217225

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     tactactactacatcatcat 78
              ||||||||||||||||||||
Sbjct: 149336 tactactactacatcatcat 149355


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,065,367
Number of Sequences: 3902068
Number of extensions: 5065367
Number of successful extensions: 109661
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109477
Number of HSP's gapped (non-prelim): 184
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top