Clone Name | rbart37a08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_478654.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1330 Score = 192 bits (97), Expect = 8e-46 Identities = 175/201 (87%) Strand = Plus / Minus Query: 325 ccgccctctgctacagcatcatcaggggtacgcaccaccaccacggggcaaatacagtgg 384 |||||||| || ||| |||| || ||| ||||||||||||||||||||| | ||||||| Sbjct: 756 ccgccctccgccacaccatcgtcggggaaacgcaccaccaccacggggcacacacagtgg 697 Query: 385 tggacgcagtaatcgctcacactcccgagccttcccttgctggcccgccgcgccgcacca 444 || |||||||||||||| || || || ||||| |||||||||| ||||| | || || Sbjct: 696 tgcacgcagtaatcgctgacgcttccaagcctccccttgctggtccgcctggaggcgccg 637 Query: 445 aaccccttgctccccatgatgaccgcgctaagccctagcctctccacctcgaggcagagt 504 || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 636 aagcccttgctccccatgatgaccgcgctgagcccaagcctctccacctcgaggcagagc 577 Query: 505 ctctccttcatgtcgtgatcc 525 ||||||||||||||||||||| Sbjct: 576 ctctccttcatgtcgtgatcc 556 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 211 aatcaagtatccttatgctcctcagcggcgtcatggtactcggcatcctcctctggcaca 270 |||||| || |||| ||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 867 aatcaattacccttgtgctcttcagtggcgtcatggtactcggcatcctcctctggcaca 808 Query: 271 gggtggagcacgtcctc 287 ||||| ||||| ||||| Sbjct: 807 gggtgcagcacttcctc 791
>ref|XM_478653.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1352 Score = 192 bits (97), Expect = 8e-46 Identities = 175/201 (87%) Strand = Plus / Minus Query: 325 ccgccctctgctacagcatcatcaggggtacgcaccaccaccacggggcaaatacagtgg 384 |||||||| || ||| |||| || ||| ||||||||||||||||||||| | ||||||| Sbjct: 801 ccgccctccgccacaccatcgtcggggaaacgcaccaccaccacggggcacacacagtgg 742 Query: 385 tggacgcagtaatcgctcacactcccgagccttcccttgctggcccgccgcgccgcacca 444 || |||||||||||||| || || || ||||| |||||||||| ||||| | || || Sbjct: 741 tgcacgcagtaatcgctgacgcttccaagcctccccttgctggtccgcctggaggcgccg 682 Query: 445 aaccccttgctccccatgatgaccgcgctaagccctagcctctccacctcgaggcagagt 504 || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 681 aagcccttgctccccatgatgaccgcgctgagcccaagcctctccacctcgaggcagagc 622 Query: 505 ctctccttcatgtcgtgatcc 525 ||||||||||||||||||||| Sbjct: 621 ctctccttcatgtcgtgatcc 601 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 212 atcaagtatccttatgctcctcagcggcgtcatggtactcggcatcctcctctggcacag 271 ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 911 atcaagtatccttgtgctcttcagtggcgtcatggtactcggcatcctcctctggcacag 852 Query: 272 ggtggagcacgtcctc 287 |||| ||||| ||||| Sbjct: 851 ggtgcagcacttcctc 836 Score = 60.0 bits (30), Expect = 8e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 139 tagcactcagccaacagtcgaatgctaggacctttacatgctggatccaacaggacat 196 |||||| |||| |||||| || |||||| |||||||||||||||||| || ||||||| Sbjct: 983 tagcacccagcaaacagttgactgctagaacctttacatgctggatcaaagaggacat 926
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 192 bits (97), Expect = 8e-46 Identities = 175/201 (87%) Strand = Plus / Plus Query: 325 ccgccctctgctacagcatcatcaggggtacgcaccaccaccacggggcaaatacagtgg 384 |||||||| || ||| |||| || ||| ||||||||||||||||||||| | ||||||| Sbjct: 21844232 ccgccctccgccacaccatcgtcggggaaacgcaccaccaccacggggcacacacagtgg 21844291 Query: 385 tggacgcagtaatcgctcacactcccgagccttcccttgctggcccgccgcgccgcacca 444 || |||||||||||||| || || || ||||| |||||||||| ||||| | || || Sbjct: 21844292 tgcacgcagtaatcgctgacgcttccaagcctccccttgctggtccgcctggaggcgccg 21844351 Query: 445 aaccccttgctccccatgatgaccgcgctaagccctagcctctccacctcgaggcagagt 504 || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 21844352 aagcccttgctccccatgatgaccgcgctgagcccaagcctctccacctcgaggcagagc 21844411 Query: 505 ctctccttcatgtcgtgatcc 525 ||||||||||||||||||||| Sbjct: 21844412 ctctccttcatgtcgtgatcc 21844432 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 211 aatcaagtatccttatgctcctcagcggcgtcatggtactcggcatcctcctctggcaca 270 |||||| || |||| ||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 21844121 aatcaattacccttgtgctcttcagtggcgtcatggtactcggcatcctcctctggcaca 21844180 Query: 271 gggtggagcacgtcctc 287 ||||| ||||| ||||| Sbjct: 21844181 gggtgcagcacttcctc 21844197 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Plus Query: 139 tagcactcagccaacagtcgaatgctaggacctttacatgctg 181 |||||| |||| |||||| || |||||| |||||||||||||| Sbjct: 21841655 tagcacccagcaaacagttgactgctagaacctttacatgctg 21841697
>dbj|AK060720.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-F04, full insert sequence Length = 1330 Score = 192 bits (97), Expect = 8e-46 Identities = 175/201 (87%) Strand = Plus / Minus Query: 325 ccgccctctgctacagcatcatcaggggtacgcaccaccaccacggggcaaatacagtgg 384 |||||||| || ||| |||| || ||| ||||||||||||||||||||| | ||||||| Sbjct: 756 ccgccctccgccacaccatcgtcggggaaacgcaccaccaccacggggcacacacagtgg 697 Query: 385 tggacgcagtaatcgctcacactcccgagccttcccttgctggcccgccgcgccgcacca 444 || |||||||||||||| || || || ||||| |||||||||| ||||| | || || Sbjct: 696 tgcacgcagtaatcgctgacgcttccaagcctccccttgctggtccgcctggaggcgccg 637 Query: 445 aaccccttgctccccatgatgaccgcgctaagccctagcctctccacctcgaggcagagt 504 || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 636 aagcccttgctccccatgatgaccgcgctgagcccaagcctctccacctcgaggcagagc 577 Query: 505 ctctccttcatgtcgtgatcc 525 ||||||||||||||||||||| Sbjct: 576 ctctccttcatgtcgtgatcc 556 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Minus Query: 211 aatcaagtatccttatgctcctcagcggcgtcatggtactcggcatcctcctctggcaca 270 |||||| || |||| ||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 867 aatcaattacccttgtgctcttcagtggcgtcatggtactcggcatcctcctctggcaca 808 Query: 271 gggtggagcacgtcctc 287 ||||| ||||| ||||| Sbjct: 807 gggtgcagcacttcctc 791
>dbj|AP005126.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0041B22 Length = 142446 Score = 192 bits (97), Expect = 8e-46 Identities = 175/201 (87%) Strand = Plus / Plus Query: 325 ccgccctctgctacagcatcatcaggggtacgcaccaccaccacggggcaaatacagtgg 384 |||||||| || ||| |||| || ||| ||||||||||||||||||||| | ||||||| Sbjct: 57908 ccgccctccgccacaccatcgtcggggaaacgcaccaccaccacggggcacacacagtgg 57967 Query: 385 tggacgcagtaatcgctcacactcccgagccttcccttgctggcccgccgcgccgcacca 444 || |||||||||||||| || || || ||||| |||||||||| ||||| | || || Sbjct: 57968 tgcacgcagtaatcgctgacgcttccaagcctccccttgctggtccgcctggaggcgccg 58027 Query: 445 aaccccttgctccccatgatgaccgcgctaagccctagcctctccacctcgaggcagagt 504 || |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 58028 aagcccttgctccccatgatgaccgcgctgagcccaagcctctccacctcgaggcagagc 58087 Query: 505 ctctccttcatgtcgtgatcc 525 ||||||||||||||||||||| Sbjct: 58088 ctctccttcatgtcgtgatcc 58108 Score = 97.6 bits (49), Expect = 4e-17 Identities = 70/77 (90%) Strand = Plus / Plus Query: 211 aatcaagtatccttatgctcctcagcggcgtcatggtactcggcatcctcctctggcaca 270 |||||| || |||| ||||| |||| |||||||||||||||||||||||||||||||||| Sbjct: 57797 aatcaattacccttgtgctcttcagtggcgtcatggtactcggcatcctcctctggcaca 57856 Query: 271 gggtggagcacgtcctc 287 ||||| ||||| ||||| Sbjct: 57857 gggtgcagcacttcctc 57873 Score = 46.1 bits (23), Expect = 0.12 Identities = 38/43 (88%) Strand = Plus / Plus Query: 139 tagcactcagccaacagtcgaatgctaggacctttacatgctg 181 |||||| |||| |||||| || |||||| |||||||||||||| Sbjct: 55331 tagcacccagcaaacagttgactgctagaacctttacatgctg 55373
>dbj|AK109507.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E04, full insert sequence Length = 1351 Score = 184 bits (93), Expect = 2e-43 Identities = 174/201 (86%) Strand = Plus / Minus Query: 325 ccgccctctgctacagcatcatcaggggtacgcaccaccaccacggggcaaatacagtgg 384 |||||||| || ||| |||| || ||| ||||||||||||||||||||| | ||||||| Sbjct: 801 ccgccctccgccacaccatcgtcggggaaacgcaccaccaccacggggcacacacagtgg 742 Query: 385 tggacgcagtaatcgctcacactcccgagccttcccttgctggcccgccgcgccgcacca 444 || |||||||||||||| || || || ||||| |||||||||| ||||| | || || Sbjct: 741 tgcacgcagtaatcgctgacgcttccaagcctccccttgctggtccgcctggaggcgccg 682 Query: 445 aaccccttgctccccatgatgaccgcgctaagccctagcctctccacctcgaggcagagt 504 || ||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 681 aagcccttgccccccatgatgaccgcgctgagcccaagcctctccacctcgaggcagagc 622 Query: 505 ctctccttcatgtcgtgatcc 525 ||||||||||||||||||||| Sbjct: 621 ctctccttcatgtcgtgatcc 601 Score = 111 bits (56), Expect = 2e-21 Identities = 71/76 (93%) Strand = Plus / Minus Query: 212 atcaagtatccttatgctcctcagcggcgtcatggtactcggcatcctcctctggcacag 271 ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct: 911 atcaagtatccttgtgctcttcagtggcgtcatggtactcggcatcctcctctggcacag 852 Query: 272 ggtggagcacgtcctc 287 |||| ||||| ||||| Sbjct: 851 ggtgcagcacttcctc 836 Score = 60.0 bits (30), Expect = 8e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 139 tagcactcagccaacagtcgaatgctaggacctttacatgctggatccaacaggacat 196 |||||| |||| |||||| || |||||| |||||||||||||||||| || ||||||| Sbjct: 983 tagcacccagcaaacagttgactgctagaacctttacatgctggatcaaagaggacat 926
>gb|BT016476.1| Zea mays clone Contig309 mRNA sequence Length = 1258 Score = 133 bits (67), Expect = 6e-28 Identities = 142/167 (85%) Strand = Plus / Plus Query: 355 cgcaccaccaccacggggcaaatacagtggtggacgcagtaatcgctcacactcccgagc 414 ||||||||||| |||||||| | ||||||||| |||||||| ||||| || || |||||| Sbjct: 476 cgcaccaccacaacggggcagacacagtggtgcacgcagtagtcgctgacgctgccgagc 535 Query: 415 cttcccttgctggcccgccgcgccgcaccaaaccccttgctccccatgatgaccgcgcta 474 || |||||||||| || |||||| || || || |||||||||||||||||||| ||||| Sbjct: 536 ctgcccttgctggtcctccgcgcggcgccgaagcccttgctccccatgatgacggcgctg 595 Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtg 521 ||| || | ||| |||||||||||||| | ||||||||||||||| Sbjct: 596 agcgagaggcgctcgacctcgaggcagaggcgctccttcatgtcgtg 642 Score = 63.9 bits (32), Expect = 5e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 139 tagcactcagccaacagtcgaatgctaggacctttacatgctggatccaacaggac 194 |||||| |||||||||||||||||||| |||| ||||||||| |||||| ||||| Sbjct: 261 tagcacccagccaacagtcgaatgctaaaacctctacatgctgaatccaagaggac 316 Score = 60.0 bits (30), Expect = 8e-06 Identities = 72/86 (83%) Strand = Plus / Plus Query: 214 caagtatccttatgctcctcagcggcgtcatggtactcggcatcctcctctggcacaggg 273 |||| |||||| |||||||| || ||||||||||||||| | || ||||| ||||| ||| Sbjct: 338 caagcatccttgtgctcctccgcagcgtcatggtactcgccttcttcctccggcacgggg 397 Query: 274 tggagcacgtcctctgcaccaaccgc 299 | || || ||||| ||||||||||| Sbjct: 398 ggcagaacatcctcagcaccaaccgc 423
>gb|AY104756.1| Zea mays PCO067622 mRNA sequence Length = 637 Score = 109 bits (55), Expect = 9e-21 Identities = 139/167 (83%) Strand = Plus / Minus Query: 355 cgcaccaccaccacggggcaaatacagtggtggacgcagtaatcgctcacactcccgagc 414 ||||||||||| |||||||| | ||||||||| |||||||| | | || || |||||| Sbjct: 281 cgcaccaccacaacggggcagacacagtggtgcacgcagtagtttgtgacgctgccgagc 222 Query: 415 cttcccttgctggcccgccgcgccgcaccaaaccccttgctccccatgatgaccgcgcta 474 || |||||||||| || |||||| || || || |||||||||||||||||||| ||||| Sbjct: 221 ctgcccttgctggtcctccgcgcggcgccgaagcccttgctccccatgatgacggcgctg 162 Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtg 521 ||| || | ||| |||||||||||||| | ||||||||||||||| Sbjct: 161 agcgagaggcgctcgacctcgaggcagaggcgctccttcatgtcgtg 115 Score = 77.8 bits (39), Expect = 3e-11 Identities = 75/87 (86%) Strand = Plus / Minus Query: 213 tcaagtatccttatgctcctcagcggcgtcatggtactcggcatcctcctctggcacagg 272 ||||| |||||| |||||||| || ||||||||||||||| | || ||||| ||||| || Sbjct: 420 tcaagcatccttgtgctcctccgcagcgtcatggtactcgccttcttcctccggcacggg 361 Query: 273 gtggagcacgtcctctgcaccaaccgc 299 ||| ||||| ||||| ||||||||||| Sbjct: 360 gtgcagcacatcctcagcaccaaccgc 334 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Minus Query: 139 tagcactcagccaacagtcgaatgctaggacctttacatgctggatccaacaggac 194 |||||| ||||||||||||||||||||| |||| ||||||||| |||||| ||||| Sbjct: 496 tagcacccagccaacagtcgaatgctagaacctctacatgctgaatccaagaggac 441
>gb|AY104155.1| Zea mays PCO077380 mRNA sequence Length = 1011 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 338 cagcatcatcaggggtacgcaccaccaccacggggcaaatacagtggtggacgcagtaat 397 |||||||||||||| || || ||||| |||||||| | ||||||||| || ||||||| Sbjct: 450 cagcatcatcagggtagcgaacaaccacaacggggcatacacagtggtgtacacagtaat 391 Query: 398 cgctcacactcccgagccttcccttgc 424 | || |||||||| ||||| ||||||| Sbjct: 390 cactaacactcccaagcctccccttgc 364 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 297 cctcgaggcagaggcgctccttcatgtcgtg 267
>gb|BT017743.1| Zea mays clone EL01N0449E08.c mRNA sequence Length = 1322 Score = 58.0 bits (29), Expect = 3e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 338 cagcatcatcaggggtacgcaccaccaccacggggcaaatacagtggtggacgcagtaat 397 |||||||||||||| || || ||||| || ||||| | ||||||||| |||||||||| Sbjct: 827 cagcatcatcagggtagcgaacaaccacaacagggcatacacagtggtgtacgcagtaat 768 Query: 398 cgctcacactcccgagccttcccttgctg 426 | || |||||||| |||| ||||||||| Sbjct: 767 cactaacactcccaagccgccccttgctg 739 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 674 cctcgaggcagaggcgctccttcatgtcgtg 644
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 341 catcatcaggggtacgcaccaccaccacggggcaaatacagtggtggacgcagtaatcgc 400 ||||||||||| ||||| ||||| |||||||| | |||||||| |||||||| |||| Sbjct: 66009 catcatcagggtagcgcacgaccacgacggggcagacgcagtggtgcacgcagtagtcgc 65950 Query: 401 tcacactcccgagcct 416 | || ||||||||||| Sbjct: 65949 tgacgctcccgagcct 65934 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 65859 cctcgaggcagaggcgctccttcatgtcgtg 65829
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 341 catcatcaggggtacgcaccaccaccacggggcaaatacagtggtggacgcagtaatcgc 400 ||||||||||| ||||| ||||| |||||||| | |||||||| |||||||| |||| Sbjct: 24551827 catcatcagggtagcgcacgaccacgacggggcagacgcagtggtgcacgcagtagtcgc 24551768 Query: 401 tcacactcccgagcct 416 | || ||||||||||| Sbjct: 24551767 tgacgctcccgagcct 24551752 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 24551677 cctcgaggcagaggcgctccttcatgtcgtg 24551647
>dbj|AK060312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-C02, full insert sequence Length = 1118 Score = 56.0 bits (28), Expect = 1e-04 Identities = 64/76 (84%) Strand = Plus / Minus Query: 341 catcatcaggggtacgcaccaccaccacggggcaaatacagtggtggacgcagtaatcgc 400 ||||||||||| ||||| ||||| |||||||| | |||||||| |||||||| |||| Sbjct: 793 catcatcagggtagcgcacgaccacgacggggcagacgcagtggtgcacgcagtagtcgc 734 Query: 401 tcacactcccgagcct 416 | || ||||||||||| Sbjct: 733 tgacgctcccgagcct 718 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 643 cctcgaggcagaggcgctccttcatgtcgtg 613
>ref|NM_179307.1| Arabidopsis thaliana unknown protein AT1G11360 transcript variant AT1G11360.2 mRNA, complete cds Length = 1159 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 612 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 562
>ref|NM_101009.2| Arabidopsis thaliana unknown protein AT1G11360 transcript variant AT1G11360.1 mRNA, complete cds Length = 1226 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 612 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 562
>gb|AC169511.1| Mus musculus BAC clone RP23-81P24 from chromosome 14, complete sequence Length = 252587 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 15 atccaataagcacaaaagttcta 37 ||||||||||||||||||||||| Sbjct: 66495 atccaataagcacaaaagttcta 66473
>ref|NM_191514.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 819 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 532 cctcgaggcagaggcgctccttcatgtcgtg 502
>gb|AY091783.1| Arabidopsis thaliana At1g11350/T23J18_2 mRNA sequence Length = 4925 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 506 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 456
>gb|AY050416.1| Arabidopsis thaliana At1g11360/T23J18_35 mRNA, complete cds Length = 1018 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 488 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 438
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 33194212 cctcgaggcagaggcgctccttcatgtcgtg 33194242
>emb|BX817082.1|CNS0ADAN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH84ZG01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1340 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 490 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 440
>emb|BX817449.1|CNS0ACMU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL23ZE08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1060 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 489 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 439
>emb|BX816453.1|CNS0AD1V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH49ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1401 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 487 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 437
>emb|BX816396.1|CNS0AD68 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH45ZE09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1033 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Minus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 489 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 439
>dbj|AP003368.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1100D10 Length = 152997 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Plus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 131122 cctcgaggcagaggcgctccttcatgtcgtg 131152
>gb|AC011661.5|AC011661 Genomic sequence for Arabidopsis thaliana BAC T23J18 from chromosome I, complete sequence Length = 84797 Score = 46.1 bits (23), Expect = 0.12 Identities = 44/51 (86%) Strand = Plus / Plus Query: 475 agccctagcctctccacctcgaggcagagtctctccttcatgtcgtgatcc 525 ||||||| |||||||||||| | || || ||||||||||| ||||||||| Sbjct: 7026 agccctaacctctccacctccaaacaaagcctctccttcatatcgtgatcc 7076
>dbj|AK072280.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018C18, full insert sequence Length = 1337 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 782 cctcgaggcagaggcgctccttcatgtcgtg 752
>gb|AY104923.1| Zea mays PCO144363 mRNA sequence Length = 982 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 491 cctcgaggcagagtctctccttcatgtcgtg 521 ||||||||||||| | ||||||||||||||| Sbjct: 242 cctcgaggcagaggcgctccttcatgtcgtg 212 Score = 44.1 bits (22), Expect = 0.45 Identities = 52/62 (83%) Strand = Plus / Minus Query: 355 cgcaccaccaccacggggcaaatacagtggtggacgcagtaatcgctcacactcccgagc 414 ||||| ||||| || ||||| | ||||||||| |||||||| || || || ||||||||| Sbjct: 378 cgcacaaccacaaccgggcagacacagtggtgcacgcagtagtcactgacgctcccgagc 319 Query: 415 ct 416 || Sbjct: 318 ct 317
>gb|AC118610.9| Mus musculus chromosome 6, clone RP23-178I17, complete sequence Length = 255673 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 attgatgcatggatccaatcaa 216 |||||||||||||||||||||| Sbjct: 225438 attgatgcatggatccaatcaa 225417
>gb|AC121356.10| Mus musculus chromosome 6, clone RP23-52D17, complete sequence Length = 178055 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 attgatgcatggatccaatcaa 216 |||||||||||||||||||||| Sbjct: 169507 attgatgcatggatccaatcaa 169528
>gb|AC140437.3| Mus musculus BAC clone RP23-88N2 from chromosome 8, complete sequence Length = 171402 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 70 gaagcacagatagacataaaacagtaaaa 98 |||||||||||| ||||||||||| |||| Sbjct: 168468 gaagcacagatacacataaaacagaaaaa 168496
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 ggacattgatgcatggatcca 211 ||||||||||||||||||||| Sbjct: 7643376 ggacattgatgcatggatcca 7643356
>gb|AC175664.2| Mus musculus BAC clone RP24-391A3 from chromosome 8, complete sequence Length = 168189 Score = 42.1 bits (21), Expect = 1.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 70 gaagcacagatagacataaaacagtaaaa 98 |||||||||||| ||||||||||| |||| Sbjct: 135611 gaagcacagatacacataaaacagaaaaa 135583
>dbj|AP004751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0494D11 Length = 149198 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 ggacattgatgcatggatcca 211 ||||||||||||||||||||| Sbjct: 68571 ggacattgatgcatggatcca 68551
>gb|AY692264.1| Bacteriophage T5 strain st0 deletion mutant, complete genome Length = 113238 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tctgctacagcatcatcagg 350 |||||||||||||||||||| Sbjct: 55473 tctgctacagcatcatcagg 55454
>gb|AC102505.8| Mus musculus chromosome 1, clone RP24-73K7, complete sequence Length = 209838 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 agaaaccccgaggtagcactcagc 149 |||||||||||| ||||||||||| Sbjct: 148229 agaaaccccgagttagcactcagc 148252
>gb|AY543070.1| Bacteriophage T5, complete genome Length = 121750 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tctgctacagcatcatcagg 350 |||||||||||||||||||| Sbjct: 63528 tctgctacagcatcatcagg 63509
>ref|XM_536036.2| PREDICTED: Canis familiaris similar to WD-repeat protein 12 (YTM1 homolog), transcript variant 1 (LOC478876), mRNA Length = 1359 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tggaagcacagatagacata 87 |||||||||||||||||||| Sbjct: 703 tggaagcacagatagacata 722
>ref|XM_854196.1| PREDICTED: Canis familiaris similar to WD-repeat protein 12 (YTM1 homolog), transcript variant 3 (LOC478876), mRNA Length = 1035 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tggaagcacagatagacata 87 |||||||||||||||||||| Sbjct: 379 tggaagcacagatagacata 398
>gb|AC147741.11| Medicago truncatula clone mth2-17b23, complete sequence Length = 110572 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acaaatgttcaccaaataca 61 |||||||||||||||||||| Sbjct: 103064 acaaatgttcaccaaataca 103083
>emb|AL139375.18| Human DNA sequence from clone RP11-138N13 on chromosome 13q21.33-22.3, complete sequence Length = 146708 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gtaaaagtctaacaaacagc 112 |||||||||||||||||||| Sbjct: 116776 gtaaaagtctaacaaacagc 116795
>gb|AC113208.5| Homo sapiens chromosome 15, clone RP11-69H7, complete sequence Length = 153468 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 tcacactcccgagccttccc 420 |||||||||||||||||||| Sbjct: 28797 tcacactcccgagccttccc 28778
>gb|AC128710.2| Homo sapiens 3 BAC RP11-307C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135514 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 55 aaatacatcagagtggaagcacag 78 |||||||||||| ||||||||||| Sbjct: 121799 aaatacatcagattggaagcacag 121822
>dbj|AK123746.1| Homo sapiens cDNA FLJ41752 fis, clone HSYRA2008376 Length = 3087 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tcacactcccgagccttccc 420 |||||||||||||||||||| Sbjct: 2851 tcacactcccgagccttccc 2870
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 atcagagtggaagcacagat 80 |||||||||||||||||||| Sbjct: 525304 atcagagtggaagcacagat 525323
>gb|AC182398.3| Pan troglodytes BAC clone CH251-119B5 from chromosome 15, complete sequence Length = 150565 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 tcacactcccgagccttccc 420 |||||||||||||||||||| Sbjct: 84991 tcacactcccgagccttccc 84972
>gb|AC068338.14| Homo sapiens chromosome 15, clone RP11-817O13, complete sequence Length = 174192 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 tcacactcccgagccttccc 420 |||||||||||||||||||| Sbjct: 166450 tcacactcccgagccttccc 166431
>gb|AY587007.1| Bacteriophage T5 strain ATCC 11303-B5, complete genome Length = 121752 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 tctgctacagcatcatcagg 350 |||||||||||||||||||| Sbjct: 63599 tctgctacagcatcatcagg 63580
>emb|AL109730.1|IRO68600 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 68600 Length = 1032 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tcacactcccgagccttccc 420 |||||||||||||||||||| Sbjct: 714 tcacactcccgagccttccc 733
>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence Length = 2906179 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 ccaaatacatcagagtggaa 72 |||||||||||||||||||| Sbjct: 1387432 ccaaatacatcagagtggaa 1387413 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,427,325 Number of Sequences: 3902068 Number of extensions: 4427325 Number of successful extensions: 88687 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88461 Number of HSP's gapped (non-prelim): 217 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)