ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart37a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MDFI_MOUSE (P70331) MyoD family inhibitor (Myogenic repressor I-mf) 34 0.24
2MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf) 32 1.2
3HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6) 29 7.6
4C3G_DROME (O77086) Guanine nucleotide-releasing factor 2 (CRK SH... 29 7.6

>MDFI_MOUSE (P70331) MyoD family inhibitor (Myogenic repressor I-mf)|
          Length = 251

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +1

Query: 316 PSGSAKMGNGILGGGRCSRMVSTWVSSASTAPRRAVASCRTAS 444
           P  +   GNG LGG +  R + T  S  S A R++  S R+AS
Sbjct: 111 PGSAGHAGNGALGGSKAHRKLQTHPSLGSQAGRKSRGSARSAS 153



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>MDFI_HUMAN (Q99750) MyoD family inhibitor (Myogenic repressor I-mf)|
          Length = 246

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +1

Query: 322 GSAKMGNGILGGGRCSRMVSTWVSSASTAPRRAVASCRTASTRHP 456
           G+ + GNG LGG +  R + T  S AS   +++ +S ++ +++ P
Sbjct: 112 GTRRAGNGALGGPKAHRKLQTHPSLASQGSKKSKSSSKSTTSQIP 156



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>HMCN1_HUMAN (Q96RW7) Hemicentin-1 precursor (Fibulin-6) (FIBL-6)|
          Length = 5635

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 14/21 (66%), Positives = 15/21 (71%)
 Frame = -3

Query: 251  HGRQHLWTCEFIPPTLPCFAS 189
            HG+Q L T E IP TLPC AS
Sbjct: 985  HGQQILSTIEGIPVTLPCKAS 1005



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>C3G_DROME (O77086) Guanine nucleotide-releasing factor 2 (CRK SH3-binding|
           GNRP)
          Length = 1571

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 241 CRPCPSIHPFHXXXXXXXXXRLQITPSGSAKMGNGILGGG 360
           C P P  H  H         +LQ TP GS+++G    GGG
Sbjct: 211 CTPPPPTHQHHSQHQ-----QLQGTPGGSSRVGGAGAGGG 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,418,915
Number of Sequences: 219361
Number of extensions: 1188852
Number of successful extensions: 3674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3671
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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